Os05g0170000

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Revision as of 10:08, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os05g0170000| Description = Protein of unknown function DUF266, plant family protein| Version = NM_001061301.1 GI:115462332 GeneID:4337935| Leng...")
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Gene Name

Os05g0170000

Description

Protein of unknown function DUF266, plant family protein

Version

NM_001061301.1 GI:115462332 GeneID:4337935

Length

5084 bp

Definition

Oryza sativa Japonica Group Os05g0170000, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 5

Location

Chromosome 5:4174663..4179746

Sequence Coding Region

4175313..4175348,4175485..4175613,4175987..4176136,4176224..4176289,4176566..4176610
,4177464..4177544,4177644..4177725,4178013..4178084,4178915..4179015
,4179132..4179248,4179371..4179691

Expression

GEO Profiles:Os05g0170000

Genome Context

<gbrowseImage1> name=NC_008398:4174663..4179746 source=RiceChromosome05 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008398:4174663..4179746 source=RiceChromosome05 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgaagccgccgcggaggtggatgtacgggcggggcggcgggaaggggaagccggcggggctgctgctgctgggggtgttcctctgcttgtcggtggtgctgctgctgctgctgcacggctcgtccccgtcgctggagggcgaggggaggaagcctgaggcggtggaggcggcggggggagggggagaggaggaggaggtggcggtggcgcgggcggaggtggaggaggcgccgctgccgccggggaacgcgcggctcgccttcctcttcatcgcccgcaaccgcctcccgctcgacctcgtctgggacgccttcttccgcggtgacaaggaagggagattctccatcttcgtgcactcgcggccggggttcgtgctcacccgcgccaccacccgatccggcttcttctacaatcggcaggtcaacaacagcgtccaggtggattggggggaggcgagcatgatcgaggctgagcgtgttctactcgcccacgcgctcaaggaccccttaaacgagcgcttcgtgttcgtctccgacagctgtgtgccattgtacaacttcaactacacttacgactacataatgtcttcgtcaaccagttttgttgacagttttgctgatacaaaagcgggtcggtataatcccagaatggacccaattatcccagtggaaaattggagaaaaggctcgcagtgggctgtgttaacaagaaaacatgctgaagttgtggttgaagatgaagaggttttgccagaattccagaagcattgcaggagaaggcccttaccagagttctggcgggactgggatcgtcctattcctgcggaggcatggaaggcacataactgcataccagatgagcactatgttcaaacattgcttgcacaacatggtcttgaagaagagcttacacggaggtcagttacacacagtgcgtgggatctatcatcttctaaagatcgtgaaaggcgtggatggcatcctgtaacatacaaaatctcagatgctactcctgcacttgtaaaatccataaaggatattgataatatatattatgagactgaaaatagaaaggagtggtgtacaagtaatggaaaaccagcaccttgcttcctttttgcaaggaagtttacacgagcagctggtctgaagcttcttgatttatctttgatagcagcaaatggcgcatctaccatgtaa</cdnaseq>

Protein Sequence

<aaseq>MKPPRRWMYGRGGGKGKPAGLLLLGVFLCLSVVLLLLLHGSSPS LEGEGRKPEAVEAAGGGGEEEEVAVARAEVEEAPLPPGNARLAFLFIARNRLPLDLVW DAFFRGDKEGRFSIFVHSRPGFVLTRATTRSGFFYNRQVNNSVQVDWGEASMIEAERV LLAHALKDPLNERFVFVSDSCVPLYNFNYTYDYIMSSSTSFVDSFADTKAGRYNPRMD PIIPVENWRKGSQWAVLTRKHAEVVVEDEEVLPEFQKHCRRRPLPEFWRDWDRPIPAE AWKAHNCIPDEHYVQTLLAQHGLEEELTRRSVTHSAWDLSSSKDRERRGWHPVTYKIS DATPALVKSIKDIDNIYYETENRKEWCTSNGKPAPCFLFARKFTRAAGLKLLDLSLIA ANGASTM</aaseq>

Gene Sequence

<dnaseqindica>4399..4434#4134..4262#3611..3760#3458..3523#3137..3181#2203..2283#2022..2103#1663..1734#732..832#499..615#56..376#gctggattcgatgggcgctcggtgagatccgaatcccccacggtggtcgccggagatgaagccgccgcggaggtggatgtacgggcggggcggcgggaaggggaagccggcggggctgctgctgctgggggtgttcctctgcttgtcggtggtgctgctgctgctgctgcacggctcgtccccgtcgctggagggcgaggggaggaagcctgaggcggtggaggcggcggggggagggggagaggaggaggaggtggcggtggcgcgggcggaggtggaggaggcgccgctgccgccggggaacgcgcggctcgccttcctcttcatcgcccgcaaccgcctcccgctcgacctcgtctgggacgccttcttccgcgtaagcgcgcgcctcgcccggatctcccccttcctctcgctcttgctcggatggctcccaatttcagcgaatgctggtttaatttgaatcctgattgcattgcgttttttgggggtgagtagggtgacaaggaagggagattctccatcttcgtgcactcgcggccggggttcgtgctcacccgcgccaccacccgatccggcttcttctacaatcggcaggtcaacaacagcgtccaggttcgcgacctcgtccccacttccgttggcaatgtgatgtgatccgtcggtagcagcatccgttgcagtccacactgggttcctgatgagttgggcatgtgtgatttgtccttcaggtggattggggggaggcgagcatgatcgaggctgagcgtgttctactcgcccacgcgctcaaggaccccttaaacgagcgcttcgtgttcgtctccgacaggtatggattatggaattatgatgtgtgctagtgtgtatgcttggataaagtattactgactttagatactaagttgattggcacaaaattttggcaatgcccaaaaaatttagtcatgtgttctgtttatagccaaaaattaagcactactaaattatttgtcttggttgaatagcaaatgcaagtttagtagaagcaaatgaatgcctagccagtttttgccagaaaatttggcaatggccagttcttgccattgccaaaaaaattggtaaggctatgaaccaaaacaagccctaactgcaatctgtgttggcttaatctcttgttcagcacaatgtgttgtttctaggttctgatcataatgaattaagggaatgttcctgaacataatgatatgtccttacatttttataaatgtggactgttatctagtaaagattgtttgttttttttaatcatcgtttggctaactaatttttttttccaatatgcaatgctcagatgataagtagtttctgtccgcgattttaagctcatgctaaaaatgtggtgcgatagcagtcctcaatcttaaattccatggaaatgaatcttgtgttatactgttagtctgtttctattaagtttaacgggactccacatgaagctgtactgaatttaccagatgccttggtgcaattttaggtatcgtttacacggttgtttttctgacagctccaaatttgaacttagtactacacatctttttttataatcttacaaagctcgttgttgcaccattttggatcttaattggattcatgcttactaggatcttctctctctgccagctgtgtgccattgtacaacttcaactacacttacgactacataatgtcttcgtcaaccagttttgttgacaggtataggcatcacaatttcgtgttgtgtttcctgatgatggttaagacttaagaatgaattctgagttcatgacaagtatcagctagtaactatgaatgttaaagaaaagaaagaaaaaaaatcatgttagcctttctcattttccattatctaagtatttccatgtaccttgagcttcaaaatggttcctgtagcaaactgcagatttgcagcttaaagcacctttcatttagcttgtataatatcctgggtattaacagcatccaattgcatatgctggggacagttttgctgatacaaaagcgggtcggtataatcccagaatggacccaattatcccagtggaaaattggagaaaaggctcgcaggtacctttctgtttctattgatgaaagataggagaattttgcttgaactgtgtaacagttagttttgataccttatcaccattcatttgtgccatacagtgggctgtgttaacaagaaaacatgctgaagttgtggttgaagatgaagaggttttgccagaattccagaagcattgcagggtatgtgactcaatatttatgcactctatgcagataaatttcagtattgtataacatagtttactcatgatcataactgaccagtgaactttttcaccttgtacctttcatcaaattaaaatcaggataacagaagttgaaaatttgaatattatcaatatttacttttttatgacagttttttgcattcgcaagtgaatgtgctctcaagataatcaacataggacacaaagaaacttgtagatttatgtaaactgccacgtatggtactgacattctgacaatgtttacgacaatgcatgatatcagtgatttattttattttattttttaaacctttttaatttttatttttaaaaataaatcattcgaaaacttatttccaagatctaaaccttttggccgtagttggttggcaaaacaacattgccacaccggtctggctggcatggcagcgttgtcttgccacaccaccgtggctggcaggacaaaactgtcacgcccgttgcgggtgacgtgtcagtgttgttttgtcacaccaggcaggctagcttggctaaaaggttcagattttggaaatattgtaaaattgtcatgcccattgcgggtgacgtgtcagtgttgttttgtcacgccaggtgggctagcttggccaaaaggttcagattttaaaattaaaaaggttaaaaaaataaaataattcgatactagtacctttgccaaatgaatagaagatccaccggatttttctatatcatcaacccaagttacttaactcatgtctctttcctatcaattagcttagagttgtctattcttgttcctattaaatgtacctttttatttattgcagagaaggcccttaccagagttctggcgggactgggatcgtcctattgtaagtgaaagtctccaataaaatactgaactgtcacttagcttgttgaacttgcttttatgtgtttatttttgaactgcagctggcacattgagtataataatcacaactcttgtgctatttcttgtactccataaaaagcttaattaacagaattattatctatggcttcaaaatttaccactgaactctatatctctatctaattgctctactgttccagaacaaagtttaattagtaattctgtgagactaaatgctgctcattttatccagcctgcggaggcatggaaggcacataactgcataccagatgagcactatgttcaaacattgcttgcagtaagtcaacaatcatttacagtatcccttgcagctgttcctcctcacaaagacatctgaccgttcaattatttttatcgaatgcagcaacatggtcttgaagaagagcttacacggaggtcagttacacacagtgcgtgggatctatcatcttctaaagatcgtgaaaggcgtggatggcatcctgtaacatacaaaatctcagatgctactcctgcacttgtaaaatccataaaggtatatgtttctttgcaatggcacattttttgttacctgaaagtggtgattatatagtatgtacatttaaaaaggaaattaagagaggctttacttttttttcttttatttgaaaattctgtcattattaaaatatttaagtacaaagcaacaaccaaggtgaatgttggaacctctgttgggtaatggcagacgctatcaattcatctgtttcaaagctttaacaaatgtcagtttggaaatgtgttgcgtctgataaggaatgtcagcttttgtttgtcatgtatacagttctgccaaaacaagctgcccgtacgaaatgcacatgacattttctaactattcactgagtacctatttgttgaatttttaggatattgataatatatattatgagactgaaaatagaaaggagtggtgtacaagtaatggaaaaccagcaccttgcttcctttttgcaaggaagtttacacgagcagctggtctgaagcttcttgatttagtaagttcaggacctttagcttttcatttcatatcgtgatgcaaacacaggcattcctaaacctaatgtattgtctaacgaaatcacattgtgatttgcttatagtttttgctctctccaaatttcccttttgcagtctttgatagcagcaaatggcgcatctaccatgtaaagtttctccgtcaaaagcagaatactgccagcttgcacatacgtaaaggaaagtggtggaggggacagaagataacagcgaattttttttgggcatcttcattacaatttgttgcactctgaaaagggacataggtgttctaaagcaataaagtttgtttcttttagcacctaggttagtacatatgttaacccactacttagcattataactgtaactgtaagcaaccacctgcagttggattggcaagaatcacctcagttcttttcacgacaaattcctttttcaaatttatagagaattggcatgtcttatacttgcatgcatactgtagtcattccatcgaaggcaatgcgtgatctggttacccaaacattaatcaagcatgttgaactcaggaactgcgtatttcacatggatttatactctcatagcagatctgccgatcaacatgcatgtttggcattctgttccatcagaaacatgggaccctagtgccgtggcaatggttatcccctacccttaggacctttggacttttgatggcctcaatttaaaactgtgctggctggagatgcagcgatggtgtagccaattcaatgattctcatcattgttgttcctccaattgatgtgttacttcttgtactc</dnaseqindica>

External Link(s)

NCBI Gene:Os05g0170000, RefSeq:Os05g0170000