Os05g0170800

From RiceWiki
Revision as of 10:09, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os05g0170800| Description = UvrB/UvrC protein domain containing protein| Version = NM_001061306.1 GI:115462342 GeneID:4337940| Length = 3177 bp|...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Gene Name

Os05g0170800

Description

UvrB/UvrC protein domain containing protein

Version

NM_001061306.1 GI:115462342 GeneID:4337940

Length

3177 bp

Definition

Oryza sativa Japonica Group Os05g0170800, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 5

Location

Chromosome 5:4222941..4226117

Sequence Coding Region

4223374..4223490,4223802..4223898,4223979..4224151,4224667..4224747,4225401..4225514
,4225619..4225939

Expression

GEO Profiles:Os05g0170800

Genome Context

<gbrowseImage1> name=NC_008398:4222941..4226117 source=RiceChromosome05 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008398:4222941..4226117 source=RiceChromosome05 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgcagtgggcggcgctgagctcgccgccggcaccggcggcgccggcggcggtgtggatggggcggagggcaagaaccgcgaggttgccgtcgccggggccgcgccgggtggtgctggccgccgcggcgtcgtcgtcgtcgccgtcgccggatgcgaactcgagctcgaactcgaactcgccggggagtggtggcggcggcgaggaggtggaggaggagagggaggacgcggcgcggatggagaaggcggcggccttcctgatgcggagccagaagtacgccatgctcaagcagcagctcgccgtggccgcccagttcgaggattacaaggaggcggcgaggctgagggattcgctcaagtcattcgaggaggaggagccagttcttcgtctccgccgatcgctcaagaaggcggttgaggaggagaggttcgaggatgctgctaagtacagagatgaactgaagattttggctccacacgccctcctaaaatgttctagtgatgctactaccctggggattagagttcaagtcaggagtgtttatattgaaagccggagccagcctttgaagggccagttcttctttgcctacagaatcagaatcacaaataattctcagcgccctgttcagcttctcagaagacattggattgtcactgatgcaaatggaaggacggagaacatttggggtgtaggtgttgtgggagagcaacctgtcatatttccaaggactggttttgagtactcatctgcatgcccattaaacacaccaaatgggagaatggaaggtgattttgagatgaagcacatcgacaaagctgggtcgtctacattcaatgtcgcaattgcaccattctctctgtcaatccttggagatgacaacgatgatgttctcctctaa</cdnaseq>

Protein Sequence

<aaseq>MQWAALSSPPAPAAPAAVWMGRRARTARLPSPGPRRVVLAAAAS SSSPSPDANSSSNSNSPGSGGGGEEVEEEREDAARMEKAAAFLMRSQKYAMLKQQLAV AAQFEDYKEAARLRDSLKSFEEEEPVLRLRRSLKKAVEEERFEDAAKYRDELKILAPH ALLKCSSDATTLGIRVQVRSVYIESRSQPLKGQFFFAYRIRITNNSQRPVQLLRRHWI VTDANGRTENIWGVGVVGEQPVIFPRTGFEYSSACPLNTPNGRMEGDFEMKHIDKAGS STFNVAIAPFSLSILGDDNDDVLL</aaseq>

Gene Sequence

<dnaseqindica>2628..2744#2220..2316#1967..2139#1371..1451#604..717#179..499#gatggagatggagagagccacagaaatgggggccaagagcggcgcccatttttagtcagccacggcgagggaagaggagccaatcttggccaagccaccctctccaagaatcctcgctgatctctctgcgtgaggcgctcaattcgatttcttggggggtcgattcggatttcttgggatgcagtgggcggcgctgagctcgccgccggcaccggcggcgccggcggcggtgtggatggggcggagggcaagaaccgcgaggttgccgtcgccggggccgcgccgggtggtgctggccgccgcggcgtcgtcgtcgtcgccgtcgccggatgcgaactcgagctcgaactcgaactcgccggggagtggtggcggcggcgaggaggtggaggaggagagggaggacgcggcgcggatggagaaggcggcggccttcctgatgcggagccagaagtacgccatgctcaagcagcagctcgccgtggccgcccagttcgaggtaacgagacgagacgagctccattggattctttcaacaagcgaacttgcaatcgaatccatccgaattggggtttactgcgaattggaataatttggttgcaggattacaaggaggcggcgaggctgagggattcgctcaagtcattcgaggaggaggagccagttcttcgtctccgccgatcgctcaagaaggcggttgaggaggagaggttcgaggtattggacatccatagcaattgtttccttaccatatttgcttgtttcagttgatacatttccatacaagaatcttgtgaattgtagtctaaaaaaagaatcctgtaaattgtgatatccccattaggcattagcaaagttggattgtgagactgtcccaatccatccttgctaacgatgtttgtggattgacgattaatccaaagacgtgcagcctcagttagttgctgcaatgtctctgccgaaaatgccaaaagccgcttatagtgatgcctgatgtgtccttttgtcgactgcacatgcaacaattttgttgtatgcttgattcttttctctccgtgctgtatattgtatgataacatcggaaaatgagaggaaatctcaagtgtcaagaaatcatctcaatacacatgtttcacttacttccttcactgttgacttttctacttgtaatagttggagttgtgttttcatgaccagaactttgaattcatcattacatagtgctgaatttgggctccttacgctaatcatatgccaatagtgatttgtgtagatattttcataccccctggttgtcagtctagaaggcattctttcttcatcttttattcaccatgtttatgatttttctctgttttcatgctttccaggatgctgctaagtacagagatgaactgaagattttggctccacacgccctcctaaaatgttctagtgatgctactaccctggtatcttacaatccaatgatttagtgatgttatactacaactctggcatgtttctttcactcgataaagtatcatagttttgaatgaaatggtttggtcatttgaaaacttgaggctatgaaacattatcattgtctatggcagtatattagtgtttaaaacccccagctggtcacgcaatttcaccagggaacttgggtatcaagtagtgacctaaaaaaatagctaaggcaggatatggaaaataagagattaatacgtgaaggtcatcaagaatctatttgagttggttataactgtgtgcgttggcccttgggcaccacttcatttctttcatatgttcaggcgccccattctttttttccacgaaaatctcatgcactacagatgaaccacctccgttggtttcgtcacctgttctgtaataattctttagttaatgtagatcaaatattttctcagattcttcattgagcttaactagatttcctgatattttttaatgttgaatttaggggattagagttcaagtcaggagtgtttatattgaaagccggagccagcctttgaagggccagttcttctttgcctacagaatcagaatcacaaataattctcagcgccctgttcagcttctcagaagacattggattgtcactgatgcaaatggaaggacggagaacatttggtaagtctctattgtactctcaccttaccaaaagaaccgtatgttaaagctaataaagacttgctccattgccatgccaggggtgtaggtgttgtgggagagcaacctgtcatatttccaaggactggttttgagtactcatctgcatgcccattaaacacaccaaatgggagaatggtaacatctaaatcttccacaacctatgttgtcacacttgtaaataggttattgtaaagtaatttttagattctagctgtgcaagagattcgtatggttctaatatctcttgattgcatatagctggcatcaatttatgcccaataattaacatggtatctagatcaattgttttgattgaagctgaaagaagaaatagtaatgttcaattaagaaagactagttatatcctgcaatttatttattgtttaggttgtttgcgtgttgcatgtctgcaaagcaaacttacctgaattctcttttggatttaggaaggtgattttgagatgaagcacatcgacaaagctgggtcgtctacattcaatgtcgcaattgcaccattctctctgtcaatccttggagatgacaacgatgatgttctcctctaaatgtgattgggtatcagaatgagtttgaataagatgatgtcaccagcaaggaatttgcataatacacaaacacgagtagtgctgttagtgatgtggctagagttctctactggaaactcctgcgaatgcaaatttttgttaagctagctgtgaattgggaaggtaccaaagttcaagatcagagtatcagacaggcaaaacatggtttggtgaaatattagagttaatttagacacacacacaaaaaaaaactacactactgtaaattgaggtatatgatggacttgtgtgtcatctaacttttgaatgtacagcatagaactatatagagcttgttgagagtataagctgcatggaactcttgtattatctcgaaaaaatgattttgtaatgttatagtttcataaatatattgcactaggatttactggtc</dnaseqindica>

External Link(s)

NCBI Gene:Os05g0170800, RefSeq:Os05g0170800