Os04g0382700

From RiceWiki
Revision as of 19:51, 22 July 2012 by 124.16.129.48 (talk)
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Function

Please input function information here.

Expression

Please input expression information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this gene

Please input related labs here.

References

Please input cited references here.

Structured Information

Gene Name

Os04g0382700

Description

Protein prenyltransferase domain containing protein

Version

NM_001059144.1 GI:115458017 GeneID:4335642

Length

5394 bp

Definition

Oryza sativa Japonica Group Os04g0382700, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 4

Location

Chromosome 4:18791692..18797085

Sequence Coding Region

18791885..18792103,18792584..18792757,18792852..18793166,18793900..18795678,18796443..18796799

Expression

GEO Profiles:Os04g0382700

Genome Context

<gbrowseImage1> name=NC_008397:18791692..18797085 source=RiceChromosome04 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008397:18791692..18797085 source=RiceChromosome04 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgtaccagtggcgcaagttcgagttcttcgaggagaaggcggccgggcggggcgtgcccggcgagatcgcctcccgcgtcagctgctgctccggcggccgcggccgcgtcgccgtcggctgcgacgacggcacggtggggctccttgaccgcgggttccgcctctcctacggcttccaggcctacgcctcctccgtcctcttcctccagcagctcaagcaaaggaatgttcttatcacggttggcgatgatgatcagccatcttcactatcgtcagcaatctgtctaaaagttttcgatcttgataaagtacaagaagaaggttcaagtacaacaagtcctttctgtgttcaaattttgcgcatcttcactaagcaatttcctcaggcaaagattacatcttttgtggttctagaagaagcacctcctatactgctaattgcgattggactggacaatggttccatttattgcatcaaaggtgacatcgcacgtgagcgtatcacgcgattcatgttgcaagtcgaggatggcaccagtttacctattactggtcttggtttccgagttgaggggcaagcacaccagttatttgctgtaactcctagttcaataaccttgtttagcttgcatgatcatccaccgaggaggcaaacgcttgatcagattggttgtgagaccaatgctgtggcgatgagtgaccgcatggatctgattattggtagacctgaagctgtgtatttctatgaaattgatggtagaggtccttgctgggcctttgatggtgagaaaaagtttgttggatggtttcggggctatttactatgcattattgaagatcagaggagccggaagaatactcttaatgtatatgatcttaagaatcggttgattgcacatagcatgccagtgggggatgtttcacacttggtctctgagtggggatatattattctgataatgagcgataaaaagattctttgcattggagagaaagatatggagagtaagcttgatatgttgtttaagaaaaatctgtatacagtcgcaatcaatcttgtacaaagtcaacaggccgatcctgcttcaactgctgaggttctaaggaagtatggtgaccatctctatggaaaacaggaatatgatgaggccatgtcccaatatatccacaccattggccatcttgaaccatcatatgttatacagaagttccttgatgcaaaacgcatctacaatctcacaaactatttagagaagttacatgatcgagggttagcatccaaagaccacaccacccttctgttgaattgctatactaaactgaaagatgtggagaagcttaaccatttcatcaaagatgaagatggggtaggtgaaatcaagtttgatgtggaaactgccataagagtatgtcgtgcagctggatatcatgagcatgctatgtttgttgccaaaaaggctgggaggcatgagttgtatttgaaaattttactggaggatcttggtagatatgatgaggcactgcagtatatatctagccttgaggcgaatcaagcaggtcttactgtaaaagagtatgggaaaattcttgtggagcatagacctgctgaaacagttgaaatactgttgagactctgtacagatggtggagatcctatgacaagaagaggttcaaatagcatgcatttgcttatgataccttctccaatggactttgtaaacatatttgtacacagcccgaaacatctcatggaatttctagagaattataccaaagcagtaaaggactcacctgctcaaacagaaattcataacacccttctggagttatatatatcaaaagatttaagtttcccttctatgtcacaagaaaatggctttgaggagcagaatagtaaggaaagaaaaggtaaagaagttgcaaatggctataaatctggcccaagggagaaaggaaatctgggaaaggaagatatgaatgtcgcaaaggatattgttgataggcaaaggaaagggcttgcattgctcaagtctgcatggacatctgagatggatgatcctctgtatgatgttgatcttgctcttatcatctgtaatgcaaatgcattcaaagatgggctattgtttctgtatgagaaactaaaactattcaaagaagttattagttgctacaagcaagctcatgatcacgagggtctaattgcctgctgtaagaagctaggagattcatctcaaggtggggatccatctctttggggtgatctgttgaaatattttagtgagcttggggaagattgctctaaagaggtcaaggaggtattgacctatattgaaaaggaggatgttttgcctcctattgttgtgctagagacattgtcgaaaaacccatgcttgacactgtcagttgtcaaggattacattgcccgcaaacttgagcaagaatcaaagctaatcgaagaagataggaaatctattgacaagtaccaggatgagacagaactgatgaaaagggagatagaagacctcaagacaaacgcaaaggtctttcagcttagcaagtgtacgacgtgcacctttacgcttgaccttcctgcggtccacttcatgtgcatgcactccttccaccttcgctgccttggggacaatgagaaagaatgcccagaatgtgctcccgaatatagatctgtcatggaggcaaagcagaagctagaacataacgctagagaccatgatctcttcttcaggcagctgaggggttcaaaggatggcttctctgtcgtcgcagactattttagcaagggcattgtgagtaaaacagccattcctcctgaaaatggccgataa</cdnaseq>

Protein Sequence

<aaseq>MYQWRKFEFFEEKAAGRGVPGEIASRVSCCSGGRGRVAVGCDDG TVGLLDRGFRLSYGFQAYASSVLFLQQLKQRNVLITVGDDDQPSSLSSAICLKVFDLD KVQEEGSSTTSPFCVQILRIFTKQFPQAKITSFVVLEEAPPILLIAIGLDNGSIYCIK GDIARERITRFMLQVEDGTSLPITGLGFRVEGQAHQLFAVTPSSITLFSLHDHPPRRQ TLDQIGCETNAVAMSDRMDLIIGRPEAVYFYEIDGRGPCWAFDGEKKFVGWFRGYLLC IIEDQRSRKNTLNVYDLKNRLIAHSMPVGDVSHLVSEWGYIILIMSDKKILCIGEKDM ESKLDMLFKKNLYTVAINLVQSQQADPASTAEVLRKYGDHLYGKQEYDEAMSQYIHTI GHLEPSYVIQKFLDAKRIYNLTNYLEKLHDRGLASKDHTTLLLNCYTKLKDVEKLNHF IKDEDGVGEIKFDVETAIRVCRAAGYHEHAMFVAKKAGRHELYLKILLEDLGRYDEAL QYISSLEANQAGLTVKEYGKILVEHRPAETVEILLRLCTDGGDPMTRRGSNSMHLLMI PSPMDFVNIFVHSPKHLMEFLENYTKAVKDSPAQTEIHNTLLELYISKDLSFPSMSQE NGFEEQNSKERKGKEVANGYKSGPREKGNLGKEDMNVAKDIVDRQRKGLALLKSAWTS EMDDPLYDVDLALIICNANAFKDGLLFLYEKLKLFKEVISCYKQAHDHEGLIACCKKL GDSSQGGDPSLWGDLLKYFSELGEDCSKEVKEVLTYIEKEDVLPPIVVLETLSKNPCL TLSVVKDYIARKLEQESKLIEEDRKSIDKYQDETELMKREIEDLKTNAKVFQLSKCTT CTFTLDLPAVHFMCMHSFHLRCLGDNEKECPECAPEYRSVMEAKQKLEHNARDHDLFF RQLRGSKDGFSVVADYFSKGIVSKTAIPPENGR</aaseq>

Gene Sequence

<dnaseqindica>194..412#893..1066#1161..1475#2209..3987#4752..5108#ggtggagttcacttcgaggatttcgcgtccgatccgaatccagtccgatccaatccaatccgacccagcgatcgagccgcacgcccctcctccgccggtcgccgccgccgccgcagcgatccctcgccggagaaaggccttccgccctccctccggcgggctccccctctctctctctgctcgggcagcggggatgtaccagtggcgcaagttcgagttcttcgaggagaaggcggccgggcggggcgtgcccggcgagatcgcctcccgcgtcagctgctgctccggcggccgcggccgcgtcgccgtcggctgcgacgacggcacggtggggctccttgaccgcgggttccgcctctcctacggcttccaggcctacgcctcctccgtcctcttcctccagcagctcaaggtactgggatagtgggatccctttcaggattcaattctccggtagatttgcttccggtgttgtctatcgtgctggatcctgtatagttagggggtaaaagaagccattgatatgtaatcgatcactaattttgacttgtgagtagcgggcgcactctcctacgaccctgaacaatgcgagacatttttgtatacaatttgcaagtaacttgttgaatcatttggttctctgaggcttagggtcagggtttgaagaataaaatttcggttgctgatagttttgcaagtaccattagttgtttcttttagtcttaatgtcttatagacaaaatggctttcttttcttttctcactaatatgcctgctaaatatgtactggttgttagtattatttttaatgccttcttgtgtattgcatttactaattgcattgttttatcatgataatagaagctaactgtggtatttaacaactgagcagcaaaggaatgttcttatcacggttggcgatgatgatcagccatcttcactatcgtcagcaatctgtctaaaagttttcgatcttgataaagtacaagaagaaggttcaagtacaacaagtcctttctgtgttcaaattttgcgcatcttcactaagcaatttcctcaggcaaaggtaaattctcctgcgaaattttgtgtctatgttatgtacttaacatcctttttctagctctaatctaattatcatgtattgcggaccatttcagattacatcttttgtggttctagaagaagcacctcctatactgctaattgcgattggactggacaatggttccatttattgcatcaaaggtgacatcgcacgtgagcgtatcacgcgattcatgttgcaagtcgaggatggcaccagtttacctattactggtcttggtttccgagttgaggggcaagcacaccagttatttgctgtaactcctagttcaataaccttgtttagcttgcatgatcatccaccgaggaggcaaacgcttgatcagattggttgtgagaccaatgctgtggcgatgagtgaccgcatggtaaggatgtcatcttctgtttttgttcatgtttgtctgtcgttcccctctaatcatatagttatacacatgttgttcaaaatctgcttgcaactctctctgatttagggcttgtttggtaatctgacccaacttacccatgatatttgtgtagttttctgataagctaatgtgttcctggaaaaatatgggatcctcagcctcacatttgctgcaaaaaattgcatgcgaattgtggtgactgactaaccatacacttgccaccatcccctatgttatatggaagttatgtatgtatctcttctcatcacagactgacagccttaagtaaagtcaaggcaaaggcacatacactaatcatactaaagtaaaattagtctgaccaagtttaactaagggatagatgcagctaacttagctctgcggctaaccaaaatcaatatgtagcttgactcttgtgacgcaaagtctagatccctttgtgactgcctgttttccctgccttgtggctgctcgaaaccacctcagtgtacaattgtgaaataatgcataggaaaattggcactaaccatgtaaacccataatagattatagtttattgcaagctagctacaagacatgggtctctccacatgcatttgattattgcattcatgcctgtgctgttcccagtacatttttcactaggatcttggtgaaatgcaatccttatgtccatctatcgtctatacaggatctgattattggtagacctgaagctgtgtatttctatgaaattgatggtagaggtccttgctgggcctttgatggtgagaaaaagtttgttggatggtttcggggctatttactatgcattattgaagatcagaggagccggaagaatactcttaatgtatatgatcttaagaatcggttgattgcacatagcatgccagtgggggatgtttcacacttggtctctgagtggggatatattattctgataatgagcgataaaaagattctttgcattggagagaaagatatggagagtaagcttgatatgttgtttaagaaaaatctgtatacagtcgcaatcaatcttgtacaaagtcaacaggccgatcctgcttcaactgctgaggttctaaggaagtatggtgaccatctctatggaaaacaggaatatgatgaggccatgtcccaatatatccacaccattggccatcttgaaccatcatatgttatacagaagttccttgatgcaaaacgcatctacaatctcacaaactatttagagaagttacatgatcgagggttagcatccaaagaccacaccacccttctgttgaattgctatactaaactgaaagatgtggagaagcttaaccatttcatcaaagatgaagatggggtaggtgaaatcaagtttgatgtggaaactgccataagagtatgtcgtgcagctggatatcatgagcatgctatgtttgttgccaaaaaggctgggaggcatgagttgtatttgaaaattttactggaggatcttggtagatatgatgaggcactgcagtatatatctagccttgaggcgaatcaagcaggtcttactgtaaaagagtatgggaaaattcttgtggagcatagacctgctgaaacagttgaaatactgttgagactctgtacagatggtggagatcctatgacaagaagaggttcaaatagcatgcatttgcttatgataccttctccaatggactttgtaaacatatttgtacacagcccgaaacatctcatggaatttctagagaattataccaaagcagtaaaggactcacctgctcaaacagaaattcataacacccttctggagttatatatatcaaaagatttaagtttcccttctatgtcacaagaaaatggctttgaggagcagaatagtaaggaaagaaaaggtaaagaagttgcaaatggctataaatctggcccaagggagaaaggaaatctgggaaaggaagatatgaatgtcgcaaaggatattgttgataggcaaaggaaagggcttgcattgctcaagtctgcatggacatctgagatggatgatcctctgtatgatgttgatcttgctcttatcatctgtaatgcaaatgcattcaaagatgggctattgtttctgtatgagaaactaaaactattcaaagaagttattagttgctacaagcaagctcatgatcacgagggtctaattgcctgctgtaagaagctaggagattcatctcaaggtggggatccatctctttggggtgatctgttgaaatattttagtgagcttggggaagattgctctaaagaggtcaaggaggtattgacctatattgaaaaggaggatgttttgcctcctattgttgtgctagagacattgtcgaaaaacccatgcttgacactgtcagttgtcaaggattacattgcccgcaaacttgagcaagaatcaaagctaatcgaagaagataggaaatctattgacaagtaccaggttggcaatttaactgtgctacctttttccttgcagcttttacaatagttgggagaaggaattggtatccattaatagtttagtttgctgcaacataagattgaaaagccttcctctattggtgctagatacaatacaaaacatgttcaagccaaaaatacaaatattagaggattttttgttcatatatttcactaaaatatgtttgagctgtcatacttgatatagtcattaaattattttcatacagttttgtactctgtatagtcaatgtcctaaactttgtagttagatgtggctgttgcacagctattggcatgtggtctcacaaggtgcctttccatgtgatgaacctttgtatggatatacttaaacactagatttcagttgaaatgtgtttcaggacaaatttgttttaatttactgagttcagcaatttgttttgcatcacacattccatgtgtatgttgtctctcagttagtcagtttgatgaccttagaatttatttaatcatgcagtgtagcatgattaaccagctgtttgagtgttgatacacactttgcaccacgggttactttttgtgtgtaatatatatttgagttgacataattaccatgataaataatttgttagcgcttaacaatgatgagtgccatcctttatttggaaagatgacagaaaacgttactaaatcccagcaacaacctacatagaaacgataacaaatagataacgattgataacatcttttttgtttatacaggatgagacagaactgatgaaaagggagatagaagacctcaagacaaacgcaaaggtctttcagcttagcaagtgtacgacgtgcacctttacgcttgaccttcctgcggtccacttcatgtgcatgcactccttccaccttcgctgccttggggacaatgagaaagaatgcccagaatgtgctcccgaatatagatctgtcatggaggcaaagcagaagctagaacataacgctagagaccatgatctcttcttcaggcagctgaggggttcaaaggatggcttctctgtcgtcgcagactattttagcaagggcattgtgagtaaaacagccattcctcctgaaaatggccgataaggagtggaagaaaaccagctctattactccccatgtacaggatttgacgatgttttatctcctttcccatggtgttttgtcatcatgtgagtttcagggtccatcacacagcatgtgcaggcctttaatagcgagttcctctagtgtaccaacttatgtatgctttctggcctattttttgtggccgtgctatggagttctgttgtgcttgacattgtaaatccttctgttggcaaacgctgcctagtttttggcatttagttttgatggaagaagattcacggcc</dnaseqindica>

External Link(s)

NCBI Gene:Os04g0382700, RefSeq:Os04g0382700