Os04g0391000

From RiceWiki
Revision as of 19:52, 22 July 2012 by 124.16.129.48 (talk)
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Function

Please input function information here.

Expression

Please input expression information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this gene

Please input related labs here.

References

Please input cited references here.

Structured Information

Gene Name

Os04g0391000

Description

Conserved hypothetical protein

Version

NM_001059179.2 GI:297602618 GeneID:4335680

Length

5212 bp

Definition

Oryza sativa Japonica Group Os04g0391000, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 4

Location

Chromosome 4:19261732..19266943

Sequence Coding Region

19261732..19261896,19262492..19262617,19262721..19262831,19263046..19263794,19264149..19264282
,19264710..19264855,19265281..19265451,19266092..19266943

Expression

GEO Profiles:Os04g0391000

Genome Context

<gbrowseImage1> name=NC_008397:19261732..19266943 source=RiceChromosome04 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008397:19261732..19266943 source=RiceChromosome04 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgaggcgccgaaacctaatcatcacctccgactccgactccgacgacggcggcggcggcggcggcgcggccaccgcctccacccccgcgtccgcctcggcgtccgcctccttcccgagcgtaagcggcggcggctgcggcgatggctggccctcgccgcaaaaccctaggtcagtccccgttcagttcccctccccgtcctcgcctcccccttcccctcccatagagatttccgatgaggaggaggcggaggcggaggtggtggtggaggaggaggaggtggtggtggtggaggacgaggaggaggagtatgaggaggtggaggagatcgaggaccccgatggggactcccccttcgtcgacgcccccgagcacatctcccctccgccgccccctccgcctccggcgcgaacgccgatgccgacgccgacgccgaccccgaccccgaccccgacccgaccccccgttcccgtgtgggctgcccctcttccggcccgaaccccaactcctactccatctgcgccgccccgagccgcggcgccatcccctgcgggaaccccgtcgccgtccccgattccgccgtcgagcaccccggtgtctgcgctgagcgggccgctgcggcaggtggacgagttcctgagggggctcgggctgcggctgcgcccggagtggctcgagtcctgcgccgccggggtacccgggttctacggcctcggcggcgtggaggcgatggccaggcggtgcttcgagcagttcctcttcgccgacatgaacgcgtgcggcgcgggcgtgctcccggagggcgttgggagcatgcacaacgccgtcctcgatggccccctcgtgctgcaggttgatgagattgtcaacctgtcagctcctttaagggaaagatatcgtgatgcacatgcggggcccaaaagatgtttaaagttatcaatgacagatgggatccaacgcatatatggaatggaatacaggccgatcaaagacctggaagttcttgcccctgctggttttaagattgttataagaaatgtgcacataaggagaggcctttttatgctggtgcccgaggtcattgagattcttgggggtgttgatgatgaactggatgaagcacgtaataggcttgtttctgaagtaaacaaaccgccacgtggcaaaaggaaacaaggtggattaccattgtcttcgagagccactctagcagcctggccaacaaatgccaatgctacaaatgatgccgagcaaggagcctcagtgccaagaacagtgaatacccctcatccaaccagattaggtaatgcttcccatgcttctcaggttggtagaactacacaacctatggtggacaatcttatccctcatgttgtagtaagcaatgcccaagagcaaagccgacatatccaagaaatcaccatgcagggccaacctacttctcttaataggcacaataaagaagcttctgcatcatatagatataatgcccaatgcagcattagtggaactacacgagctatggcagacgaacatgttttagtaagcaatgcccaagagcaaagcccgcatatccaggaaatcaccatgcaggaccaatctacttctcttaatgggcgcaataaagaagcttctgcatctacttcttatagatataatgcccaatgcagcattagtggaactacacgagctatggcagatgaacgtgttgacccttcctttgttggtaataacgtacatgaacaaatgcaacgtgttcaaggtatcaccatgcaggaccacattagtgcttctagtgagagcaaaagggaactttctgtgactaccccttctggatatgattcccgacttgcgccacatggtgttggcaatactggcacaagaagtggggaagccacacgatcttcaaatgtggatgatgggatcaataacattgggcatccgatcagtctatgtggcgaaaatgaaaagccttttacttacatattcaacatgttagctgattggggtgttcaacaggatacagtaccttatattcaaggaaaaattaagggtttgatcacttctgtcaaacggtttcaatacaagcaatccatgcaatacgatctttatgtctacatagatgatggtagttttattacagaggcctttgttgaccgtgatattgtacagaacatgattggcctttccgctgaggagcttgcagctgctctttcttctggtggcccagcacaagccaatataagaaaaactatgaaagcatttgagcatttcctggtgaactttgagggcacaatccttattgagctcaacagagattcttctgttcctattgtacgtgagatgaataaaggttgttcaagttcggatgcgtggcagctgcttcggagggtgaaaacattttctggtcagggctacatgcggagcctggattttatggacaccactccatga</cdnaseq>

Protein Sequence

<aaseq>MRRRNLIITSDSDSDDGGGGGGAATASTPASASASASFPSVSGG GCGDGWPSPQNPRSVPVQFPSPSSPPPSPPIEISDEEEAEAEVVVEEEEVVVVEDEEE EYEEVEEIEDPDGDSPFVDAPEHISPPPPPPPPARTPMPTPTPTPTPTPTRPPVPVWA APLPARTPTPTPSAPPRAAAPSPAGTPSPSPIPPSSTPVSALSGPLRQVDEFLRGLGL RLRPEWLESCAAGVPGFYGLGGVEAMARRCFEQFLFADMNACGAGVLPEGVGSMHNAV LDGPLVLQVDEIVNLSAPLRERYRDAHAGPKRCLKLSMTDGIQRIYGMEYRPIKDLEV LAPAGFKIVIRNVHIRRGLFMLVPEVIEILGGVDDELDEARNRLVSEVNKPPRGKRKQ GGLPLSSRATLAAWPTNANATNDAEQGASVPRTVNTPHPTRLGNASHASQVGRTTQPM VDNLIPHVVVSNAQEQSRHIQEITMQGQPTSLNRHNKEASASYRYNAQCSISGTTRAM ADEHVLVSNAQEQSPHIQEITMQDQSTSLNGRNKEASASTSYRYNAQCSISGTTRAMA DERVDPSFVGNNVHEQMQRVQGITMQDHISASSESKRELSVTTPSGYDSRLAPHGVGN TGTRSGEATRSSNVDDGINNIGHPISLCGENEKPFTYIFNMLADWGVQQDTVPYIQGK IKGLITSVKRFQYKQSMQYDLYVYIDDGSFITEAFVDRDIVQNMIGLSAEELAAALSS GGPAQANIRKTMKAFEHFLVNFEGTILIELNRDSSVPIVREMNKGCSSSDAWQLLRRV KTFSGQGYMRSLDFMDTTP</aaseq>

Gene Sequence

<dnaseqindica>5048..5212#4327..4452#4113..4223#3150..3898#2662..2795#2089..2234#1493..1663#1..852#atgaggcgccgaaacctaatcatcacctccgactccgactccgacgacggcggcggcggcggcggcgcggccaccgcctccacccccgcgtccgcctcggcgtccgcctccttcccgagcgtaagcggcggcggctgcggcgatggctggccctcgccgcaaaaccctaggtcagtccccgttcagttcccctccccgtcctcgcctcccccttcccctcccatagagatttccgatgaggaggaggcggaggcggaggtggtggtggaggaggaggaggtggtggtggtggaggacgaggaggaggagtatgaggaggtggaggagatcgaggaccccgatggggactcccccttcgtcgacgcccccgagcacatctcccctccgccgccccctccgcctccggcgcgaacgccgatgccgacgccgacgccgaccccgaccccgaccccgacccgaccccccgttcccgtgtgggctgcccctcttccggcccgaaccccaactcctactccatctgcgccgccccgagccgcggcgccatcccctgcgggaaccccgtcgccgtccccgattccgccgtcgagcaccccggtgtctgcgctgagcgggccgctgcggcaggtggacgagttcctgagggggctcgggctgcggctgcgcccggagtggctcgagtcctgcgccgccggggtacccgggttctacggcctcggcggcgtggaggcgatggccaggcggtgcttcgagcagttcctcttcgccgacatgaacgcgtgcggcgcgggcgtgctcccggagggcgttgggagcatgcacaacgccgtcctcgatggccccctcgtgctgcaggttataccattttctctttacttagaatgcgtggttaaattttttggtcatacttttgttactgagctctaggttccctatacctgtactgctgtggtgccgcctagtgtggcatgcttggtgtgatctgcggaattttggaaggcacttaagatcaaatatctgctagtattttcagggaataaatatgtgcttcaagcttgagcccgtcgatgtttacttgtttcagttcggtagttcatgattcatctgacactcaatagaatggaaagctgtggttttcttcttttgtatatcaactcatcaagtgtgccatgagtgctgaatttcgtagcacaaatggtaccgcgccgaaataaacatgattttgatagcacagtaaattgcttattctgaaaagtagttgtcagttcctgtgtatttctttcctagcactgatgcctttatacgtcttgtaagttcaatttccaatctccatacaggcatacactagctcatgccatattcaataattttttaactttagcatacactaattgtacattgttgtagttttgcatttttttttgtgataatgtgttctggggttttccttttgttctttttttcctatggtttaactgactcttgagtttgtaaggttgatgagattgtcaacctgtcagctcctttaagggaaagatatcgtgatgcacatgcggggcccaaaagatgtttaaagttatcaatgacagatgggatccaacgcatatatggaatggaatacaggccgatcaaagacctggaagttcttgcccctgctggttttaaggtcattgctttctctgttcctttttcttcagaacatttgtattttgcgttcattttattagtttacatttaaaaattatcagtgaatttttttttcacacaacatagttagatttatccattagcattcaatatagcaaactaattatcacaaaactctggtttttccctcctagatagtagcttccatggtcactggtgctctgttagactccctgccttttcaatttacttttctcttaagaaatggtttctggagacaggcttctacaattaaacgataaatgcttatcaatctatgtaaacaatttgattgcgaacaaactattgactaagtgataatacaaaatagtgtgactggaagagacattttttccatttgctattttttgtatcaacagctcataacttgtcaacacatctcagattgttataagaaatgtgcacataaggagaggcctttttatgctggtgcccgaggtcattgagattcttgggggtgttgatgatgaactggatgaagcacgtaataggcttgtttctgaagtaaacaaaccgccacgtggcaaaaggtatatgttgtgcattagtgaattgagcagatttacatacatgacatttaattgcaacacatgcttcaaacttggattttaagcaatgacttgagagttatttttgcgaatatcctagtagttggataaatcatatcattcaaatgcaaatgtgcctgtttaggatctgtggtagtggcctttctgtggtaatggtgggagccatatgctgggaggtcctttatgaacaacggaactttctttgccttccatttcttttcaatttcatggaatttatttagcttctaagtttaaacaaaacaaatactcaatgttcacatctatccagtcagttgcatgccagaaattttgtttttcaatgtgtatataacatttcttgacaggacactgcttgtttgttcacaagtcacaactcttcatgctgcaggaaacaaggtggattaccattgtcttcgagagccactctagcagcctggccaacaaatgccaatgctacaaatgatgccgagcaaggagcctcagtgccaagaacagtgaatacccctcatccaaccagattaggtactatatagatttcattgatagattgattgtgtggcgaactagcttttgttcttagaaagaatggaaactgaattataaattagtagtaattgttttgctggaacacagagcattgctataacgtggccgtttttttaatccattggctttcaatgctaagttaggctagtttgtccacaattgctgcaacaagcactctcagtagactacctgccagatttttttcgttctccattcatgtggtaacgacgaaccgagtttagccaaattaaatgggattaacattgcaactcctcagttttatataatattcttcatcatgttttgtgatctcaaaatttcaatgcgcaggtaatgcttcccatgcttctcaggttggtagaactacacaacctatggtggacaatcttatccctcatgttgtagtaagcaatgcccaagagcaaagccgacatatccaagaaatcaccatgcagggccaacctacttctcttaataggcacaataaagaagcttctgcatcatatagatataatgcccaatgcagcattagtggaactacacgagctatggcagacgaacatgttttagtaagcaatgcccaagagcaaagcccgcatatccaggaaatcaccatgcaggaccaatctacttctcttaatgggcgcaataaagaagcttctgcatctacttcttatagatataatgcccaatgcagcattagtggaactacacgagctatggcagatgaacgtgttgacccttcctttgttggtaataacgtacatgaacaaatgcaacgtgttcaaggtatcaccatgcaggaccacattagtgcttctagtgagagcaaaagggaactttctgtgactaccccttctggatatgattcccgacttgcgccacatggtgttggcaatactggcacaagaagtggggaagccacacgatcttcaaatgtggatgatgggatcaataacattgggcatccgatcagtctatgtggcgaaaatgaaaagccttttacttacatattcaacatgttagctgattggggtgttcaacaggatacagtaccttatattcaaggaaaaattaaggtttgcttgcttcttagtacattagttgctcatttccaaatggttttgtttaccaaaaactttttaggagtacttcaactgcatcagttccatatttccagtttgaccaaactagttttcaatggctcaagaatgttggaacattctcttgcacacattatttttttaataatatatggaaatgagtaaacgttgattgatataactgctacagggtttgatcacttctgtcaaacggtttcaatacaagcaatccatgcaatacgatctttatgtctacatagatgatggtagttttattacagaggcctttgttgaccgtgatgtaagtaaatctatttgtattagtaatttatcctagtgtgcttacttgtgattgccatcttaccttattgcatcatcatgtgttctgccattctgtttgatagattgtacagaacatgattggcctttccgctgaggagcttgcagctgctctttcttctggtggcccagcacaagccaatataagaaaaactatgaaagcatttgagcatttcctggtgaactttgaggtcattcttgctctcatattattgtacctgttttcattgtgagtttgtgacgtttctgcattggtaaaaccttgcattctaatggcaggcactcagcaaccatactagttgagtaccatgtccaaaagtgaatacataatctttctttatcctagtggaacaggaatagactactgtgttgaagtaaaagattcttcatttttccttgttcagataacataggcaggcatagcgatagacattagccaattgaaattcaaagaatggtaataaaaatagcaggctatagaatttagatgaataatttagagtatttttaagaaacattttgctgtttaaggaaagtaataccagcacagagaacctatttgacattgcatattcttgaagcagccaaatttgatgatattatagctcgtaaatattgaagcacataagcccgacatgctattttgattataaacccttgcaaacttgcgtggttcatattattgctacatcaataacgtttcattacatggaattttagttcaattttgtttgtagcattctgaaatatgaaatgtgttttgagctctacttcccttgattgcagggcacaatccttattgagctcaacagagattcttctgttcctattgtacgtgagatgaataaaggttgttcaagttcggatgcgtggcagctgcttcggagggtgaaaacattttctggtcagggctacatgcggagcctggattttatggacaccactccatga</dnaseqindica>

External Link(s)

NCBI Gene:Os04g0391000, RefSeq:Os04g0391000