Os05g0176800

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Revision as of 10:09, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os05g0176800| Description = HCO3- transporter, eukaryote family protein| Version = NM_001061328.1 GI:115462386 GeneID:4337963| Length = 7351 bp|...")
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Gene Name

Os05g0176800

Description

HCO3- transporter, eukaryote family protein

Version

NM_001061328.1 GI:115462386 GeneID:4337963

Length

7351 bp

Definition

Oryza sativa Japonica Group Os05g0176800, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 5

Location

Chromosome 5:4580364..4587714

Sequence Coding Region

4580364..4580429,4582438..4582572,4583116..4583383,4583871..4584193,4584538..4584654
,4584751..4584864,4585055..4585228,4585290..4585441,4585575..4585740
,4585829..4585967,4586064..4586256,4586526..4586608,4586692..4586807
,4587320..4587389,4587593..4587714

Expression

GEO Profiles:Os05g0176800

Genome Context

<gbrowseImage1> name=NC_008398:4580364..4587714 source=RiceChromosome05 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008398:4580364..4587714 source=RiceChromosome05 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgtcttccgtgggggaaacacaggagagtcccaggcgactcctgattctcgtccaaactgccctcgtgtactcgcaagcgtggaagatatgggcacatgattcagcatccttcccgcaaaggcttccaagaaaacaaatcaggctgagtcgggttcaaggaaacggtggcaacaaggtcccagatttggagttatttcagatgacgggaactgtgaaagccccatttgagggagtggttaatgatttcaaaggaagattatcttgctacaaacaagattggatagatgggttccgtactggattcaggatattggcacctacattgtatatcttctttgcatctgcactacctgttgttgcctttggggaacaattgagtaatgatacagatggtgcactgaccacagttgagacattagcatcaaccgctatatgcggcatcatacattcaatattgggcgggcaaccactgttgattgtaggagttgcggagccaactataatcatgtacacttatatctacaattttgccaaaaatcacccaaacctcggagaaagactatttctgccatgggctggatgggtttgcatctggactgccttcatgctattcctcatggcaatgtttaatgctgcagtcgttataaacagatttacaaggtttgctggagaactatttggaatgttgattacgattttgttcatgcaggaagcagtcaaggggatgttgggtgaattcagtgtgcccgagggtaaagaccacagtctaccgatataccaattccaatgggcttatgttaatggtctgcttggaattatcttttcaatgggcctgctatacacagcaatacgtagcaggagtgcaagatcatcgctatacggcactgtctggacagctttgtcgtattcattgccaagcaagatcccttcaggggttcctaggaggctcttcaccccacttccttgggaaccaaagtcattgcagcattggacagtagcaaaggttgtgatgcagtttattttgattccaggatctaatgatttgttttctgtccctccaccatacatatttttggctattgtgcctgctgtaatggttgccgggctctatttctttgatcatagtgtagcttcacaactggctcagcagaaggagtttaatttgaaaaacccatcggcttaccattatgacattttggtcctcagctttatggatacaaatgccatgcaggtcttgatttgtggtcttattggcatccctccatctaatggagtacttccccagtcccccatgcacactagaagccttgccgtcctcaaggggcagttgcttcgcaaaaagatggtccaaactgccaaggagggtatgatgaacaatgctagcagttcagaagtttatggaaagatgcaagaagtttttatcaaaatggatgataaatccaatgccaaatctgtacgcaaagagctgaaggaattgaaggatgcagttattccagagggaaatggagcagggagggtgtctgaggtatttgatcctgaaaagcatatagaagcttacttgcctgtccgggtgaatgagcagagagtgagcaatctgttgcagtccctgttgatcgctggttgtgttggagtcatgccaatcattcagaagataccaacatcagtcctttggggttactttgcttatatgtccattgacagcgttccgggaaaccagttctgggagaggacacaacttctgttcatttcacctcaacggcgctacaagcttctggaaggcgctcatgcatccttcatggagtcagtacctatcaagaaaatatctgccttcactattttccagctggtttatctcttgatcgtctgggggatgacatggataccagtagctggaatcctcttcccactgctgttcttctttctcattgtcattagacagtatatcctcccgaaattcttcgatccacgccacctgtgggaattggatgcagctgagtacgaagaacttgagggagtgcggcgtgatccgtctacggacgaagatgcttccgtttcgcgctgcagcgatgccagccctgaatatgcttctgagatattggatgaattcacgactaatcgtggtgaactgaagcacaggaccaagagtttccgtgacgagaggctgatacagcttaattcggtgaagatgaccagagaactttctcggattccgacttttactcctccacgatcctaa</cdnaseq>

Protein Sequence

<aaseq>MSSVGETQESPRRLLILVQTALVYSQAWKIWAHDSASFPQRLPR KQIRLSRVQGNGGNKVPDLELFQMTGTVKAPFEGVVNDFKGRLSCYKQDWIDGFRTGF RILAPTLYIFFASALPVVAFGEQLSNDTDGALTTVETLASTAICGIIHSILGGQPLLI VGVAEPTIIMYTYIYNFAKNHPNLGERLFLPWAGWVCIWTAFMLFLMAMFNAAVVINR FTRFAGELFGMLITILFMQEAVKGMLGEFSVPEGKDHSLPIYQFQWAYVNGLLGIIFS MGLLYTAIRSRSARSSLYGTVWTALSYSLPSKIPSGVPRRLFTPLPWEPKSLQHWTVA KVVMQFILIPGSNDLFSVPPPYIFLAIVPAVMVAGLYFFDHSVASQLAQQKEFNLKNP SAYHYDILVLSFMDTNAMQVLICGLIGIPPSNGVLPQSPMHTRSLAVLKGQLLRKKMV QTAKEGMMNNASSSEVYGKMQEVFIKMDDKSNAKSVRKELKELKDAVIPEGNGAGRVS EVFDPEKHIEAYLPVRVNEQRVSNLLQSLLIAGCVGVMPIIQKIPTSVLWGYFAYMSI DSVPGNQFWERTQLLFISPQRRYKLLEGAHASFMESVPIKKISAFTIFQLVYLLIVWG MTWIPVAGILFPLLFFFLIVIRQYILPKFFDPRHLWELDAAEYEELEGVRRDPSTDED ASVSRCSDASPEYASEILDEFTTNRGELKHRTKSFRDERLIQLNSVKMTRELSRIPTF TPPRS</aaseq>

Gene Sequence

<dnaseqindica>7286..7351#5143..5277#4332..4599#3522..3844#3061..3177#2851..2964#2487..2660#2274..2425#1975..2140#1748..1886#1459..1651#1107..1189#908..1023#326..395#1..122#atgtcttccgtgggggaaacacaggagagtcccaggcgactcctgattctcgtccaaactgccctcgtgtactcgcaagcgtggaagatatgggcacatgattcagcatccttcccgcaaaggtgacagtatggagccaagtgccatcctcgccgctggaggttgtccgccatcaggcatgctccacgcatggcaaggaacatgaagaacttgcaatgggccggcgcgcgagacttccaaatcagcttcccaaccgccaagcgtgtcttcccagcgcagaggagtgaataggctgattttactgagaaaccaccatctgcggcaggcttccaagaaaacaaatcaggctgagtcgggttcaaggaaacggtggcaacaaggtcccagatttggaggtattcaaacatcgcttgcagcgagagacctcccctgatgtcgccggtccaggcatcatcctgcagcgccaaatgaaccgttctgcctctgtttttaacaaaggaacacaggattggggctcagttcaggatcgaccccccatctgggagccagtcatctgtccagaagaaggaactcttcccgtcgcccagcactatcctgcatccggccgctagacaatgttcggctttcctatcttgcggcgacgtgaaggacacccagtggcgctccagctgggcacgccgcagccaaagccaccgcgtccgaagggcaatgcccattctgccaagattgatgatgcccaacccgccattttcgatcggcagacagagcttatcccaagcaactaggctgcatccacccggtgcatcctcatccccctttcacaagaaaccgcggcatttcttttcaattgctttaattgcccacaccggcaattccaacaccgagaaatttatttttattagctcagttatttcagatgacgggaactgtgaaagccccatttgagggagtggttaatgatttcaaaggaagattatcttgctacaaacaagattggatagatgggttccgtactggattcaggtttgtgtaatcgaacatttccaatgttaatttttgcatgtttgttcttaattctggctgctgtattgattatgttatttcaggatattggcacctacattgtatatcttctttgcatctgcactacctgttgttgcctttggggaacaattgagtaatgatacaggttggattgtcttccttgtacttacatcagctatgagcttcgccattcctagttattgacacgatgttctacatactttagctctccgtaatatttgagttggaaaaagggaaacaagttattaactcttctttcaaaacggggggacaatagaaagtaataacagtttcctttctctattggtcggagtcaaggaacaatcaaacggataactgtggctccttcagagtttatacgcagtttctgacatctgaattgttcatgttcagatggtgcactgaccacagttgagacattagcatcaaccgctatatgcggcatcatacattcaatattgggcgggcaaccactgttgattgtaggagttgcggagccaactataatcatgtacacttatatctacaattttgccaaaaatcacccaaacctcggagaaagactatttctgccatgggctggatggtaagggctgataaatataacaatccttccttcagttttctttttggttatactaaatgttatctgcatttctcacttttctttggccactgatagggtttgcatctggactgccttcatgctattcctcatggcaatgtttaatgctgcagtcgttataaacagatttacaaggtttgctggagaactatttggaatgttgattacgattttgttcatgcaggaagcagtcaaggtattcgtcatttgttttcttaccgttaataacatataaagtgtgctctaatttagtttactgttactacatggtctttgttctgcaggggatgttgggtgaattcagtgtgcccgagggtaaagaccacagtctaccgatataccaattccaatgggcttatgttaatggtctgcttggaattatcttttcaatgggcctgctatacacagcaatacgtagcaggagtgcaagatcatcgctatacggcactggtttgtcataagtaccttaattttttttttttatctcagtctccaaatatcaactactcatacgccagctaataacctgcagggtggcaaagaagcttcattgctgactatggcgttccactcatggttgtagtctggacagctttgtcgtattcattgccaagcaagatcccttcaggggttcctaggaggctcttcaccccacttccttgggaaccaaagtcattgcagcattggacagtagcaaaggttgtgatgcagtttattttgattccaggatctaatgtaaaatgtagatatattcgatgttggaattttgatgtgcttttcgctattgattttgcaggatttgttttctgtccctccaccatacatatttttggctattgtgcctgctgtaatggttgccgggctctatttctttgatcatagtgtagcttcacaactggctcagcagaaggagtttaatttgaaaaacccatcggcttaccattatgacattttggtcctcagctttatggtatgatttgccatttgtagttgcctctgtagcatacattttcttattttgcagtaaggatgcaatcctttgattcctactgcttatgggaacacaaaaatataaaataattggtgataagtggaagttgttgagacatgtatacacgatcttacaaactttgctatagaaatggcttttttctcaataggatacaaatgccatgcaggtcttgatttgtggtcttattggcatccctccatctaatggagtacttccccagtcccccatgcacactagaagccttgccgtcctcaaggggcaggttagtgattttgacgtgtttatactccttacgtatttctgtttatgctattcagtttgcctttgctcaagtgctatctctatttcttttgattagttgcttcgcaaaaagatggtccaaactgccaaggagggtatgatgaacaatgctagcagttcagaagtttatggaaagatgcaagaagtttttatcaaaatggatgataaatccaatgtgagtataaagtatacagtatacaccagaatatattcattcctcagtacaatactaattatactgttgcttcatactgcttgattaatcatatccgcttcgttttttcaaagagggccttttccccttgtgaacattttaattagtaactaccagcgtcatcagtgagattattgtcctaataaaatagtatctctgttagattttattaagttattcgaagaaacaatataatcattcattccgttctgtctgcaagacaaaataaatgcaccacttagccccatgcagtaaaaatctctgttaatattttcctaaaaaaaatctctgttaataccctgcaggccaaatctgtacgcaaagagctgaaggaattgaaggatgcagttattccagagggaaatggagcagggagggtgtctgaggtatttgatcctgaaaagcatatagaagcttacttgcctgtccgggtgaatgagcagagagtgagcaatctgttgcagtccctgttgatcgctggttgtgttggagtcatgccaatcattcagaagataccaacatcagtcctttggggttactttgcttatatgtccattgacagcgttccgggaaaccagttctgggagaggacacaacttctgttcatttcacctcaacggcgctacaagtaagccctcatctagctgcgttctgtatctattcagacgagcccttttaaaaactttagggcatgtttagattgtagccaaaataaatcttaccgaatgccaaaattttagcaagatgttaatattgtcaaaatattgataggatttcttatgtatttactaaatttggcgacaaactaaacatagccaaaattttgacaactttaaaatagtatggttgaaaatggcatcaaagtaaacaggcccttaaagatacgagggggagtgttactataacttgggagataccaaatactgtcaaaatgtattatttaatggtgcctctaaaacctcccaaggatcgtagaacttgtctattcatttcttgtcagcatgctatgcgtgtttagttcttgctatgtgtgtttagttcttgctaagccagttttgagtgcaggaacataagtttcagtactaattattatttgttcttgataaattggacaggcttctggaaggcgctcatgcatccttcatggagtcagtacctatcaagaaaatatctgccttcactattttccagctggtttatctcttgatcgtctgggggatgacatggataccagtagctggaatcctcttcccactgctgttcttctttctcattgtcattagacagtatatcctcccgaaattcttcgatccacgccacctgtgggaattggatgcagctgagtacgaagaacttgagggagtgcggcgtgatccgtctacggtatgaattctttgtcctctttcttttttttttctttttgcacattatttttcccacatatatttgactgcggagcacttaaactctagtagctcatatatttgactgaaatttaaaatcctttttggtctgctaggttcttttcacgtctttctaatacataccattccttttttttgaccaaatcgagtattatagtttaatgcagtcaaaatattaaattactcgaacagtatagccttatgcatatgtgtggtttggcaattttcctacatctttgactgaatttagaatgccttttggtctgctaggttctttgcacgtctttctaatacatagccttttttttttcttttggaccatattgagtattttagtttaatgcaaccaaaatgttaaattattggaatagacgaacagtatagccttacgcatgtgtagtttggcaattttcctacctctagtaggctttagccatcactcttaaagtcttaactgctttctaagatgatctgaatcttctggctttggctctttacacaggacgaagatgcttccgtttcgcgctgcagcgatgccagccctgaatatgcttctgagatattggatgaattcacgactaatcgtggtgaactgaagcacaggaccaagagtttccgtgacgagaggctgatacaggtaccgactcatatccagcgatggggttatttcccctgccccccccccccacccccctcccccccccccccccccaaaaaaaaaaaagccatttagattgaggcctattttggagagcttgtagctgctgcagattttcctaggaatcagaagcttcctcaaacaatctaactttgatccagattctaagaagttatagtcgtaaaatccagaaaatgaactagaagccagaagctacaaaagtcagtttttccggattctcagaagctggctaccaaccagctgttttttagaatcttaagctccccaaacaaaccttgagattgtttagcagaattttaaaatcacggtaaagttgccttgatacccgtaggaatttatttgcttagaaaagatcacgtttagcaatatactctcttcatcatcccataatacaagagattatgacatctttttataaaaagttaaggaattttaaaaaaaaatcatgtataaaagtaaacggacgaacctacggctcgggcgcccattagcccgatgggctgggagcaaaatcgggcgctgacgtcagcatatactctcttcattatcccataatagaagagattatgacatctttttataaaaagttaaggaattttaaaaaaaaaatcatgtataaaagtaaacggacgaacctacggctcggacgcccatcaggccgatgggcttgggagcaaaatcaggtgctgatgtcagcatggcgtcagcgcccgatttacgtgcaaaactattttaaactgatttttctcctaaattacttatccaaatcatgatccaattgcaccattaaattcgttgcaattaaatcttcaaaacaagaccgcacatggatatattccgacgaaaaaaaatagcttattattgaattatttttaaatgttgtatgatgttccaccaagtatatcggaattgtttcactaagtagatcgaaaatgtttcactagtttaaatcggatgttgtttcaccttatataaaaacaatgtttcagtaaatagcgaaagaatgtttcagttcactacaacattagatctgtacacagtgaaacattggtagtacactaggtgaaatatttttcggtggaacaaaaaataaaccaaattctcttaatagggggtttcgaaaatatgtgggttttttgttgcaatggagtgtttcgttcactgcaacattagatctatacatagtgaaacaaaaaataaactaaattcccttaatagagagtttctaaaatatgtgggtgatttgttgcaacggtgtgttccataatatcaaaatccactgcaacatttgatccgtatatagtgaaacatcatgagtacactagctgaaacattgtaaaactaccagttgaaacatcaaaagagaccatatgcaacattaaaaaaatcaataaaaaaactaaaatattttttatcgaaatataatcatgtatggtcttgttgtaaagattaattgtaacgaatttagtggtgcaatcatatcgtagattagattaatagtttaagagaaaaaatcttttgaaggaatgaaagatgggagtacgggggaaaagattctttgcatgcagacatatagtggtaggtacaaaagcagcgtccgatttttctccacccctgccggtcgcccgggtgtgagcattttcgaaagtaaactgcgcagtagttaggagaataaactgataaagagtaaactagtataaaagtaaataaaatattatcaagggatcataaaatcccgtatattttaaaagtatattatagagcaggactaactatcaataagcaataaatacagtggttagatactagattgggaaagcagtacttcacagtattcaaaatcccttatatttatgaatataggggtatctaactaagtatgcttattacagaatcaacgtctactgatcctaatttcaactataacccgagttggaagctaatatcttcttctttttgttgacagcttaattcggtgaagatgaccagagaactttctcggattccgacttttactcctccacgatcctaa</dnaseqindica>

External Link(s)

NCBI Gene:Os05g0176800, RefSeq:Os05g0176800