Os04g0403400
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Contents
Annotated Information
Function
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Expression
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Evolution
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References
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Structured Information
| Gene Name |
Os04g0403400 |
|---|---|
| Description |
Tyrosyl-DNA phosphodiesterase family protein |
| Version |
NM_001059233.1 GI:115458195 GeneID:4335738 |
| Length |
5617 bp |
| Definition |
Oryza sativa Japonica Group Os04g0403400, complete gene. |
| Source |
Oryza sativa Japonica Group ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
| Chromosome | |
| Location |
Chromosome 4:20030885..20036501 |
| Sequence Coding Region |
20030911..20031902,20032002..20032136,20032249..20032393,20032550..20032831,20033064..20033325 |
| Expression | |
| Genome Context |
<gbrowseImage1> name=NC_008397:20030885..20036501 source=RiceChromosome04 preset=GeneLocation </gbrowseImage1> |
| Gene Structure |
<gbrowseImage2> name=NC_008397:20030885..20036501 source=RiceChromosome04 preset=GeneLocation </gbrowseImage2> |
| Coding Sequence |
<cdnaseq>atggaggcggagccgccgccggagaaccgccacgacgaccaccacccctccacttccggcggaggcctgggctacttccacctccgcctcctctgccccgccgcgccactcctcctcctcctccgctccgaccgcctctactccctctccctctcccgccgccgcggcccccgcctccgcctcctcgcctcccctcgccgccgccacggccggcgacggcgggccctcctcctcagcacatcgggctgcgccctccgcctcacccaccgctcctccagcgccgacgccgtgcgcgtcaacggccggcccctcctccgcggtgggtgcccggccgatctggccgtcggcgacgaggtctcgctactccgccgtggcaccaggtatggattcttggtggagaaattcgtctcctgcgaacggcccaaattggcggcggcggagccctgcggggaggttcttgtgctgcgggccgagtcgctccggaagcggctgagggcgatctcggagagtcatgatcctctctctttcttgagggattcacattgtgtggagaacggcagcgatgatgttagggtgaaaaaggcgagagaagaagatgttttcttgcccctgaacctgaatgctccaattgaccctgttgccgtggagggtttactgcgagaagactgtaatcttggccaggggaaattggagcactgcactgattcagcaattgcaaaaaatgaaactgatgaattgattcaacggagcaaggggtcctgcgatggcaatacagagcagaaggaatacagcaatgagaacacagagcagcagcacaatgagaatgagggttgctattcagatgggagcacattcttcctgaatcgcctcattggtattgggtctgatatgagggtggagcaacggagtggagtgacacttccacagcttctgcatcccatggatagcttggagcgagtatttatcgcaacattcacctccgatgtttcctggtttctggattactgtaaggttccacagaacctgccggtgacgatagcatgccacaacaaggagaggtgctggagtgcgagtcgcgaaagtagaaccgctgcccctttcggaagttatcctaacctactattagtttacccccaattcccagaggagatagcatttggaaaggataggaagaagcaaggagtggcatgccaccatccaaagctcttagtgctacagaggaaagacagcatgcgtgtcattgtcacttcagctaacttagtacctaggcagtggcatctcataacaaacacggtgtggtggcaagatttcccttgtaggacatccacagattattcagctctttttagtaaagttgaggaatcaaaatcagatttcgctactcaattagtttcattcatagcattccttatcaatgaagttcctagccaatcatattggataaatgagatagccaagtataattttgaaggagctgctggatacctcattgcttccgttccagggatatatgcacgcaatcctcactatctggagtccaattattgcctttcaagaaaacagatattacacaccaaatcggcacataggatgtttcttggttctgtccaaacatccgtagttggtctgtcccatcggtttcatataccatctgatgctggttctaaactgaaagccctgtctgtacttcttagtaaatgccatgtgaacatgcatggaactacagaagtgatcttgaagaggaatacaaatatacctgcagatgctaatgctgtgagtgtcctagttgctgatctggataaatttaccgaggaagattcagtccatcttggtttcctgcctagagaggttgcaaagtgggtatctcccctcagtgacttggggttcttcacattttctggatttatctaccccagagaagccctggaagctgcatatggagcaactaacacaaaagtgcagttgcttctctatgtatcaaagggtccagagttttctcaaatttcaagactgatccaggatgaacattttcctcttctgtgctcattagtagcatccttaaagcggtcccttggactttggcgattagaagaggtgttgtcacatttcaaatggcctgaaacacttgagactgattttttctacagtgcttcatccattgggacttcaattaatccacaattcattgcaagctttgcttcagcagctggtaaacgatgtaatcaggatttggactccgaagagtctgatccagagtggggttgctggacagcaaaccatgagctaaagaagccatctatcaatttgttgtttccaacaattgacagagtgaaaaatggggcttgtggaattcagttatccaggcatttgctttctcttcctgagagaacatggcaaagactgagatctactggcatatttcgtgacgcaatcccacatccatacgagaggatagggcatcctatgcatgtcaaggttgcccagagacgcttcgagtctcgtctaggcagacactcattcggctggacttactgtgggtctcacaatttcagtccagcagcctggggacaacaacttcctccaccaaaagcaaatcctactgaagccagagccgtttcttctggtccgaggctacacatttgcaactatgagctcggcatcatcctcattattccaccatctgccatgtcaaagcagatcagtggaaggaggcacgagatcaatgacattgtcctgccattcgtcgtccctccaccgcaatataagctgggcgataggcctgcgacatcgttagccatgcgagaggccatggctgaagctagaattctgcagagtaacgatttagtactggacttgtcacaggatacagacgaggatatacctgatgaagatgatgagcatgtgattgagctgtctgattgctcccctgaagagaaggaagaggagaagatctacgcagagacgctgtgggagcaagtagactcttcacaaagaccaggctggccagtgaagttgaagtccagatgtttcggatga</cdnaseq> |
| Protein Sequence |
<aaseq>MEAEPPPENRHDDHHPSTSGGGLGYFHLRLLCPAAPLLLLLRSD RLYSLSLSRRRGPRLRLLASPRRRHGRRRRALLLSTSGCALRLTHRSSSADAVRVNGR PLLRGGCPADLAVGDEVSLLRRGTRYGFLVEKFVSCERPKLAAAEPCGEVLVLRAESL RKRLRAISESHDPLSFLRDSHCVENGSDDVRVKKAREEDVFLPLNLNAPIDPVAVEGL LREDCNLGQGKLEHCTDSAIAKNETDELIQRSKGSCDGNTEQKEYSNENTEQQHNENE GCYSDGSTFFLNRLIGIGSDMRVEQRSGVTLPQLLHPMDSLERVFIATFTSDVSWFLD YCKVPQNLPVTIACHNKERCWSASRESRTAAPFGSYPNLLLVYPQFPEEIAFGKDRKK QGVACHHPKLLVLQRKDSMRVIVTSANLVPRQWHLITNTVWWQDFPCRTSTDYSALFS KVEESKSDFATQLVSFIAFLINEVPSQSYWINEIAKYNFEGAAGYLIASVPGIYARNP HYLESNYCLSRKQILHTKSAHRMFLGSVQTSVVGLSHRFHIPSDAGSKLKALSVLLSK CHVNMHGTTEVILKRNTNIPADANAVSVLVADLDKFTEEDSVHLGFLPREVAKWVSPL SDLGFFTFSGFIYPREALEAAYGATNTKVQLLLYVSKGPEFSQISRLIQDEHFPLLCS LVASLKRSLGLWRLEEVLSHFKWPETLETDFFYSASSIGTSINPQFIASFASAAGKRC NQDLDSEESDPEWGCWTANHELKKPSINLLFPTIDRVKNGACGIQLSRHLLSLPERTW QRLRSTGIFRDAIPHPYERIGHPMHVKVAQRRFESRLGRHSFGWTYCGSHNFSPAAWG QQLPPPKANPTEARAVSSGPRLHICNYELGIILIIPPSAMSKQISGRRHEINDIVLPF VVPPPQYKLGDRPATSLAMREAMAEARILQSNDLVLDLSQDTDEDIPDEDDEHVIELS DCSPEEKEEEKIYAETLWEQVDSSQRPGWPVKLKSRCFG</aaseq> |
| Gene Sequence |
<dnaseqindica>27..1018#1118..1252#1365..1509#1666..1947#2180..2441#2589..2755#2846..2956#3872..3923#4006..4115#4225..4353#4652..4741#4831..5391#gtcatctcctcctcccctcccttcccatggaggcggagccgccgccggagaaccgccacgacgaccaccacccctccacttccggcggaggcctgggctacttccacctccgcctcctctgccccgccgcgccactcctcctcctcctccgctccgaccgcctctactccctctccctctcccgccgccgcggcccccgcctccgcctcctcgcctcccctcgccgccgccacggccggcgacggcgggccctcctcctcagcacatcgggctgcgccctccgcctcacccaccgctcctccagcgccgacgccgtgcgcgtcaacggccggcccctcctccgcggtgggtgcccggccgatctggccgtcggcgacgaggtctcgctactccgccgtggcaccaggtatggattcttggtggagaaattcgtctcctgcgaacggcccaaattggcggcggcggagccctgcggggaggttcttgtgctgcgggccgagtcgctccggaagcggctgagggcgatctcggagagtcatgatcctctctctttcttgagggattcacattgtgtggagaacggcagcgatgatgttagggtgaaaaaggcgagagaagaagatgttttcttgcccctgaacctgaatgctccaattgaccctgttgccgtggagggtttactgcgagaagactgtaatcttggccaggggaaattggagcactgcactgattcagcaattgcaaaaaatgaaactgatgaattgattcaacggagcaaggggtcctgcgatggcaatacagagcagaaggaatacagcaatgagaacacagagcagcagcacaatgagaatgagggttgctattcagatgggagcacattcttcctgaatcgcctcattggtattgggtctgatatgagggtggagcaacggagtggagtgacacttccacagcttctgcatcccatggatagcttggagcgagtatttatcgcaacattcacctccgatgtttcctggtgcgtcttctctctgcttgtatatcttcctttgcttgcaacattgagagatatatgattgaattattgatgggaatacaaatttgtgtatggcctaaggtttctggattactgtaaggttccacagaacctgccggtgacgatagcatgccacaacaaggagaggtgctggagtgcgagtcgcgaaagtagaaccgctgcccctttcggaagttatcctaacctactattagtgtaagtagcaaccttgtgttttgttcagtagttgtctgtatatatatctcatgcttctgcgaaacatgcatgataatgaaacactgatgctaatgttaattttcccctcaagttacccccaattcccagaggagatagcatttggaaaggataggaagaagcaaggagtggcatgccaccatccaaagctcttagtgctacagaggaaagacagcatgcgtgtcattgtcacttcagctaacttagtacctaggcaggtcggtatctttctgtactccatgaatgtgcttgttactagaattcagttcgcacctaggcaggttctgcatttctgatgcactctttaattgtttgttctgtttgtggtgatttctgctgttattctcggtgaaagtaaattatgctttgtgcagtggcatctcataacaaacacggtgtggtggcaagatttcccttgtaggacatccacagattattcagctctttttagtaaagttgaggaatcaaaatcagatttcgctactcaattagtttcattcatagcattccttatcaatgaagttcctagccaatcatattggataaatgagatagccaagtataattttgaaggagctgctggatacctcattgcttccgttccagggatatatgcacgcaatcctcactatctggagtccaattattgcctttcagtaagtcttatttcagatagcatttgttgttccctccttttactgaagccatttcactaagcatcttaacatactaagttactaactataatttgcaaagattatcaggcaaatatactatggctaagtggattatattcctaatctaaactagacactactgctgttctttcttgaaatagttctaatccagccctattatcttactagccactatccattatttatgcagagaaaacagatattacacaccaaatcggcacataggatgtttcttggttctgtccaaacatccgtagttggtctgtcccatcggtttcatataccatctgatgctggttctaaactgaaagccctgtctgtacttcttagtaaatgccatgtgaacatgcatggaactacagaagtgatcttgaagaggaatacaaatatacctgcagatgctaatgctgtgagtgtcctagttgctgatctggataaatttaccgaggaaggtatgtactatgtacacctcaaggtttacatcttttgctaaacaaactcacctccaaaaatattgtgttgcatggttcatgtggcaaacaaatacttgggattttctgttatggtagcaaataaccatgtccaatgccctgaaatagattcagtccatcttggtttcctgcctagagaggttgcaaagtgggtatctcccctcagtgacttggggttcttcacattttctggatttatctaccccagagaagccctggaagctgcatatggagcaactaacacaaaagtgcagttgcttctctatgtatcaaaggtatgtaaaagattcttacggatgccttttcataagtcaagagtactactgtgaaattgtccatgcatatcttacagtcataaaattcagggtccagagttttctcaaatttcaagactgatccaggatgaacattttcctcttctgtgctcattagtagcatccttaaagcggtcccttggactttggcgattagaagaggtttgcaattttatatgggcaatatatgaccttgatttgataaattatgctatgcgtaaactgaattacagttctttgagatgattattctaccatattatttgtttttttttttgactaaatcaccggggggggagagattccccacctgaatttgtcattgcattaagaggaaataagttcattacaataaattgagagattgtaagggggaggagaaaatttgtttccaaacagatattacataacgatcttcatcctttaagttctccgcccaaagagctgcctcgcttatgcaacgttgcaggcaggatcagatggaggggcttttctcgctgaaaacgacgtcatgtcggtggttccaaatagcccacatgcaaagcaggaagaaaacctggcagtgaagcgccggcactcttgaacttgggcccaaacgatggaagtgcctaacgtcttgaacttgcggttgaacgttaatcatcgcccagaaagcttgagcgaacggacatgaaaagcacatatgattagctgtttcttcctcctgattgcagatgtcacattttccgtcctgaacaatggttttcttcagcaaatttccctttgtggacagacgattgcggactagtaaccatgcgaaaagtttaactttgagaggagctctgcaattccaaattagttcccaattaggcgaatgcaaaccagggggcagtcgtgcctcatagaatttttttgttgttaacctccctagctttgtactgagcctgaaaaaaaaagaccactagcagtagtttgaaggtgattgggataatccaaattcatactaattgctagctctattgtgagataatccataccgcctgttctatttacttgcattaatcgagtgtcaactgtattttccattggttcaaacaggtgttgtcacatttcaaatggcctgaaacacttgagactgattttttctacagtgagtaaaacatttttttttcttagctggaatcaattgtcatattcagggattccttacttcagatttaaaatatttgtaggtgcttcatccattgggacttcaattaatccacaattcattgcaagctttgcttcagcagctggtaaacgatgtaatcaggatttggactccgaagagtctgatccagaggtaaattttaactgtttattgaagcatcccctattctaataaacccctgcccttttttgaccaattcttcacgcacataacttttaccaattttcattggttgtcctagtggggttgctggacagcaaaccatgagctaaagaagccatctatcaatttgttgtttccaacaattgacagagtgaaaaatggggcttgtggaattcagttatccaggcatttgctttctcttcctgaggtagatttctcttcttgtaacttactatttgcatattttaccaataagagagatcatattgtatgtgcgttatacttgatgtgcttgtaaggttgtagccaagtcttcttttccattttgtgcctaaagctgcatactatccttgtgtgctttagttcagtgaattaagatgttatgcatatcgggataagcaactatattgatctgtttagagaagcgacgttaagcatattgctaattcaggggatacattcacagctgctgtgttgcagtgggagtaactctttccttttggcagagaacatggcaaagactgagatctactggcatatttcgtgacgcaatcccacatccatacgagaggatagggcatcctatgcatgtcaaggtacgatgttatacatatcttgggggaatatcatggtttatactttgcaacattgtttagtgacatgttaaatcatgagttcatgacaggttgcccagagacgcttcgagtctcgtctaggcagacactcattcggctggacttactgtgggtctcacaatttcagtccagcagcctggggacaacaacttcctccaccaaaagcaaatcctactgaagccagagccgtttcttctggtccgaggctacacatttgcaactatgagctcggcatcatcctcattattccaccatctgccatgtcaaagcagatcagtggaaggaggcacgagatcaatgacattgtcctgccattcgtcgtccctccaccgcaatataagctgggcgataggcctgcgacatcgttagccatgcgagaggccatggctgaagctagaattctgcagagtaacgatttagtactggacttgtcacaggatacagacgaggatatacctgatgaagatgatgagcatgtgattgagctgtctgattgctcccctgaagagaaggaagaggagaagatctacgcagagacgctgtgggagcaagtagactcttcacaaagaccaggctggccagtgaagttgaagtccagatgtttcggatgacaagttcctgtcatcgcatctgatttcaagtgcaggcagccgcacgagatctgacgattctttcttactgaagatatttgattcgattgtgatttgttagaattgtattttacaatgtgtagtatgcattcgttgtcaatctttcttgtaagtatctcaatacatctatacttgaacttcacagcgtatatagttgaagtttatttcaaaaacttttattgagctc</dnaseqindica> 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