Os05g0182600

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Revision as of 10:09, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os05g0182600| Description = Similar to SSRP1 protein| Version = NM_001061355.1 GI:115462440 GeneID:4337994| Length = 5605 bp| Definition = Oryz...")
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Gene Name

Os05g0182600

Description

Similar to SSRP1 protein

Version

NM_001061355.1 GI:115462440 GeneID:4337994

Length

5605 bp

Definition

Oryza sativa Japonica Group Os05g0182600, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 5

Location

Chromosome 5:4946149..4951753

Sequence Coding Region

4946379..4946432,4947332..4947517,4947622..4947727,4947819..4947955,4948431..4948514
,4948599..4948690,4948800..4948908,4948996..4949082,4949179..4949271
,4949826..4950023,4950101..4950252,4950352..4950502,4950616..4950714
,4950804..4950977,4951122..4951200,4951300..4951421

Expression

GEO Profiles:Os05g0182600

Genome Context

<gbrowseImage1> name=NC_008398:4946149..4951753 source=RiceChromosome05 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008398:4946149..4951753 source=RiceChromosome05 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgacggacggccaccacttcaacaacatatccctcggcggccgcggcggcaacaaccctggccagtttaaactttattcgggaggacttgcatggaagaggcaaggtggaggaaagaccattgaggttgaaaagtctgatatcacttctgtgacatggatggcaatccccagatcctatcagcttggtgtttcaacaaaggagggcctcttctacaggttctttggcttccgtgaacaggatatcagttcattgactaacttcatggaaaagaacatgagaatcacaccagaggagaagcagctttctgttggtggacataattggggcggaattgaaatcaatggcaatatgcttagctttaatgttggttcaaaggaagcatttgaagtctctctagcagacgtagcacaaactcagatgcaaggaaaaacagatgttgttctggagtttcatgtggatgatactactggtggtaatgagaaagattcattgatggatttaagctttcatgtaccaacttcaaatactcaattccctggagatgagaatcgtccttcagctcaggttttatggcaggctatcttgaataaggctgatgttggctcatcagaggaagctgttgttacatttgatggaattgctattcttactccaagaggtcgatacagtgttgaacttcatctgtcattcttacgactccaaggacaagctaatgatttcaaaattcaatatagcagtattcttcgcctctttgttttaccaaagtcaaataatcctcatacctttgtggttatcactcttgatccaccaattcgcaaaggacagacattatatcctcacattgttattcagtttgaaactgaagcagtcgttcaaagggatctgacattaagtgatgaggttttggctgaaaagtacaaggatagactggagaactcttaccagggtctgatacatgaagtgttctccaaggtccttcgtggcctatctggtgctaaagttacgaggccaagcacgttccgcagttgtcaagatggatatgcagtgaaatcatcactcaaagctgaagatggattgctctatccgctggagaagggcttcttctttctaccaaagcccccaacactcattctgcatgaggagattgagtatgttgaatttgagcgacatggtgctgggggtgctagtatctcatctcactattttgatctcctggtcaagctgaaaaatgatcaagaacatctattcagaaatatccaaagaaatgaataccataatctcttcaatttcatcagtggcaagcatttgaaaatcttgaatcttggagaagctcaaggtagagctggtggcgttacagctgttcttcagagcactgatgatgatgctgttgatcctcatctggagcggatcagaaatcagactggcgatgatgagagtgatgaagaggatgaagattttgtggcggacaaggacgacagtggatctcctactgatgattctggagaggagggttctgacgctagtttaagtggaggagaaaaggagaaatcttccaaaaaggaagctagtagctcaaaggcgcctttgaagaagaggaagccaaagggtggggatgcggcggaaggctcggagaaaagaaagccaaagaaaaagaaggatcctaatgcccctaaaagagcaattgcaccattcatgtacttctcaaaagctgagcgagctaatctgaagaacagcaatccggagctggctaccacagagattgcgaagaagcttggggagaggtggcaaaagatgacagccgaggagaagcagccatacgtcgagcagtctcaagttgacaagaagcgctacgcggaggagtcagccgcctaccgcggggcggctgccatggatgtggactccggccctgcttcggactga</cdnaseq>

Protein Sequence

<aaseq>MTDGHHFNNISLGGRGGNNPGQFKLYSGGLAWKRQGGGKTIEVE KSDITSVTWMAIPRSYQLGVSTKEGLFYRFFGFREQDISSLTNFMEKNMRITPEEKQL SVGGHNWGGIEINGNMLSFNVGSKEAFEVSLADVAQTQMQGKTDVVLEFHVDDTTGGN EKDSLMDLSFHVPTSNTQFPGDENRPSAQVLWQAILNKADVGSSEEAVVTFDGIAILT PRGRYSVELHLSFLRLQGQANDFKIQYSSILRLFVLPKSNNPHTFVVITLDPPIRKGQ TLYPHIVIQFETEAVVQRDLTLSDEVLAEKYKDRLENSYQGLIHEVFSKVLRGLSGAK VTRPSTFRSCQDGYAVKSSLKAEDGLLYPLEKGFFFLPKPPTLILHEEIEYVEFERHG AGGASISSHYFDLLVKLKNDQEHLFRNIQRNEYHNLFNFISGKHLKILNLGEAQGRAG GVTAVLQSTDDDAVDPHLERIRNQTGDDESDEEDEDFVADKDDSGSPTDDSGEEGSDA SLSGGEKEKSSKKEASSSKAPLKKRKPKGGDAAEGSEKRKPKKKKDPNAPKRAIAPFM YFSKAERANLKNSNPELATTEIAKKLGERWQKMTAEEKQPYVEQSQVDKKRYAEESAA YRGAAAMDVDSGPASD</aaseq>

Gene Sequence

<dnaseqindica>231..284#1184..1369#1474..1579#1671..1807#2283..2366#2451..2542#2652..2760#2848..2934#3031..3123#3678..3875#3953..4104#4204..4354#4468..4566#4656..4829#4974..5052#5152..5273#aaaaagccaaagccccacccaaagcggcgacgcccctctctctctctctctctctctcttctcttctcttctctcctccacgtcgcggctcgcgcctccaaatccccccccgcgaggcgagcagggcgaggcggcgaaagcgcgacgcgcgagcggatcgaggcggcggcgtcggtgccggcatccaccgcgtgcataggttgcgtcggcggcggcggaagcggggcgcgatgacggacggccaccacttcaacaacatatccctcggcggccgcggcggcaacgtgagtgctactcgtcgacttggtcgaaaaattcgcttccccctcgtcgaatcttcgcctccgggcttcgtttcgttaggattttgtggcggcgttgtctcgctcccgtggaggcggtttccgcggacgggcttgactaccggaatttgtggcggcgattgattttgtttttttttggtgtggcgggcggttgatttttctagggtttgcgcgctagggtttctgcttggaaggggggaagtcgaaatgaattaggaaaattttggtggatggactcgaatattgtaaggttggctaggcaaaacgaattattctgttgcaaatgcggcggtgaaaagcattgtatggaacaattttggaagttaaattaattgtaaatattcccaaaccctgggtttttgataatctcttcattcaatatcctttcactagtcgaatgtctcatgaaattgctcctaatatctagttggcttgcgtttggcgcacattttagcattcatcctgtggttatttcgtccatcactgcatcaatttatttaatcgcatcttatgtcctacataattatcagtattcttcaattttaaataccatttatcttcaatttgcttgctttgttaaatgatttattcctcttatgatttttttatcacatgcctgaaacaaatcactttttgcagaactaaaaatgttttcatctgttttgttcatgattttttttctggaaatagtggatgcttatgccatttcccattgcaaataggaatatgtatatcaagtttagtctgatatcaacgccaacttttccatcatcattatttgcttgcccactgttagtaacttcccttgtaccttgaggtgctgaaatcttctgctactgttattgtttgggctcttgtagaaccctggccagtttaaactttattcgggaggacttgcatggaagaggcaaggtggaggaaagaccattgaggttgaaaagtctgatatcacttctgtgacatggatggcaatccccagatcctatcagcttggtgtttcaacaaaggagggcctcttctacaggttctttggcttccgtgaacaggtaatacttcctcctgtttttcctaagaaaattaggtcttcccaaacgtgtatgtttctcatagataacttttattgagctaagatttttcttctaatttttaggatatcagttcattgactaacttcatggaaaagaacatgagaatcacaccagaggagaagcagctttctgttggtggacataattggggcggaattgaaatcaatggttagccaaattctctatattattccgttgctccattgcctttctgcaacgtttggtagtttgattgctttccatgttatttccatttcaggcaatatgcttagctttaatgttggttcaaaggaagcatttgaagtctctctagcagacgtagcacaaactcagatgcaaggaaaaacagatgttgttctggagtttcatgtggatgatactactggtggtaatgaggtatgtggtttatccagatatacatttctctgcatccaatttcgcccatattttattagatgctacttttctgtttgttaggtgcaattggttataagtaatcaatttatgtttatcaatctgaagaaatgtggatgtaacaattgtacaagctatctgttacatttcagtgtcatgtattattagctactcaactgtctgccttgtaattaaagagtgattttactgtcctgctttttcattctcatttgatggtattgcaagtaacacactcccattgttagagaaaaaccatttcataaaattttggggtctttatttgtgctgaagggcatattgatcattgttttccaccctactacatattttggagggtctttatttgtgctcagaatattattaaggtagctaagctaatcgttgacaaaaaaaaaggacagctaatttcaacttcctttccttcttttaaatgtagaaagattcattgatggatttaagctttcatgtaccaacttcaaatactcaattccctggagatgagaatcgtccttcagctcaggtgagtttgctcaacaagcatgcaagatggacaacatacacatgattttattgtgcaaatggtgaaatcctctcctttttttaggttttatggcaggctatcttgaataaggctgatgttggctcatcagaggaagctgttgttacatttgatggaattgctattcttactccaaggtgggtaaatcatataaccatagagactagactttttagaaataaggacatcattcaatgttattgttttcaattttctggaatagctaacttctccttttctattcagaggtcgatacagtgttgaacttcatctgtcattcttacgactccaaggacaagctaatgatttcaaaattcaatatagcagtattcttcgcctctttgttttaccaaaggttctgccccttttatatttttattatgctgtacttgttgttaactttgtatctgacaaaaaatcctatgacttttcaccttggcagtcaaataatcctcatacctttgtggttatcactcttgatccaccaattcgcaaaggacagacattatatcctcacattgttattcaggtgttgtattagaattcaatttgatactaacttggttacagtttacggtaaccttccaatatgcatttggtaaccattttctgtatttatgaatagtttgaaactgaagcagtcgttcaaagggatctgacattaagtgatgaggttttggctgaaaagtacaaggatagactggagaactcttaccaggtgatgtattttgtttgcgttcaatcaagtctgacattcttcatctaaaaagtggatcctaattcccggctcatgtagttttgcatttctttctacatctgagcatctgtagaacaaaaaaaaaagtagtttgggggtgtgaatcattttaaataactgcttccagcaatgttatttgttcttgtttgttttagtttcttgtttgtagtcatatgctctgagctgtatttattgtggtaatgtgctgctggatgcttgcaactccaggaatcatcagtgcactgattcccaaacttgtgattcatccgtttatcactgaattgcttgttttttttctatctactcatgactcctgtttgactgaattgcacaagctgctattgatgtgatgaactgcttctgtggcattactgccattgagtctatcattatgtattcctttgtgtttgcaactttgcatgagttatagggtcctatagcttttgctcatttgctatttttaactcctgatagactaataacaaactcacagaaagtatttgatttatctatagggtctgatacatgaagtgttctccaaggtccttcgtggcctatctggtgctaaagttacgaggccaagcacgttccgcagttgtcaagatggatatgcagtgaaatcatcactcaaagctgaagatggattgctctatccgctggagaagggcttcttctttctaccaaagcccccaacactcattctgcatgaggaggtctgttttctacactgctgagatgattgataattccatccatttgtcctgttttaagctgtagctctttatggcagattgagtatgttgaatttgagcgacatggtgctgggggtgctagtatctcatctcactattttgatctcctggtcaagctgaaaaatgatcaagaacatctattcagaaatatccaaagaaatgaataccataatctcttcaatttcatcaggtctgtgctttatttagctgattccaccatcattggtttacttgcctttttgaatagaagtatgaagctgataagtgcctttttgtaatccctttcaagtggcaagcatttgaaaatcttgaatcttggagaagctcaaggtagagctggtggcgttacagctgttcttcagagcactgatgatgatgctgttgatcctcatctggagcggatcagaaatcagactggcgatgatgagagtgatgaagaggtatttcctgcgtttaattgttgatcctacttatcatgattccatgatctgacttatcaatcctgtcatagcttggaattaatttgtttgtatcggataatcttcaacttcaggatgaagattttgtggcggacaaggacgacagtggatctcctactgatgattctggagaggagggttctgacgctagtttaagtggaggagaaaaggaggtaactcattttactcacgcaatatccctgatcagtgtctataatgaatacatcatgctaatcaacattactattccccccctccaaagaaatcttccaaaaaggaagctagtagctcaaaggcgcctttgaagaagaggaagccaaagggtggggatgcggcggaaggctcggagaaaagaaagccaaagaaaaagaaggatcctaatgcccctaaaagagcaattgcaccattcatgtacttctcaaaagctgagcgagctgtaagttcctttccaccctgcactactgtacagaaattccctgactaatcctatgtgaaacattgtgggaggatctctctctctctctctctctcacacacacaagcaaagaagggagcttacgatcgtttttcccaaatgcagaatctgaagaacagcaatccggagctggctaccacagagattgcgaagaagcttggggagaggtggcaaaagatgacaggtaacattctttgatctctatgctcgacaatgtccatgctggtcggtcaagtcctccgagacctccgtttgaaccatgtccgcttcgtgtaacttgcagccgaggagaagcagccatacgtcgagcagtctcaagttgacaagaagcgctacgcggaggagtcagccgcctaccgcggggcggctgccatggatgtggactccggccctgcttcggactgaagagaagagacctgaattgcattccagattacccttagtctaggagggcgacagacaggatacggctagtggcatctctatttccatgtaaataaaacttatgagttatctggatgtaaataaaactatcgtaggtatctttcgagtcccgttctatgagtgtcttatcgctttatcttagctatatatatagatagcagctatagtatagtagagttcttcccgccatttatgctggccggataacttaccttcacctatgtagcagcaataagcatgcttatctgcttagttaaattataaatgcgtgttctagctggagaatcacctct</dnaseqindica>

External Link(s)

NCBI Gene:Os05g0182600, RefSeq:Os05g0182600