Os04g0545000

From RiceWiki
Revision as of 19:56, 22 July 2012 by 124.16.129.48 (talk)
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Function

Please input function information here.

Expression

Please input expression information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this gene

Please input related labs here.

References

Please input cited references here.

Structured Information

Gene Name

Os04g0545000

Description

Similar to WRKY transcription factor 34

Version

NM_001059999.1 GI:115459727 GeneID:4336561

Length

6708 bp

Definition

Oryza sativa Japonica Group Os04g0545000, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 4

Location

Chromosome 4:27682822..27689529

Sequence Coding Region

27683055..27683238,27688549..27688704,27688818..27688903,27689001..27689327

Expression

GEO Profiles:Os04g0545000

Genome Context

<gbrowseImage1> name=NC_008397:27682822..27689529 source=RiceChromosome04 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008397:27682822..27689529 source=RiceChromosome04 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgtatgcgtgcatggaagggagccagttggagacggcttgcctccctgccgcgctctacgcgccgctctgcccgtacacgccgccttcccctccttcctttcttgcgccattgccgagcctgcagcacaagcttccccagctgccgcagctggtccacgaccacgccgccgccaccgggacgaaccatggcgtgatgttctcgtcggaccatggctgcctgtacccgctgctcccggggatcccgttctgcctcgactccggctgcggcgccgccgcctgcgacgacgacaagcccgccggtttcgcgcacttgggctccgccgaggcggacacatcggcggcggcggcgagagtggatagcgagattgctgcagctgccaccgcaaccacttgccatgggcctaattcatggtggaaggggacggagaaggggaagatgaaggtgaggaggaagatgagggagccgaggttctgcttccagaccaggagcgatgtggatgtgctggacgacggctacaagtggaggaagtatggccagaaggttgtcaagaacagcctccacccaaggagctactacaggtgcacccacaacaactgccgcgtgaagaagcgggtggagcggctgtcggaggattgccgcatggtgatcaccacctacgagggccgccacacccacaccccctgcagcgacgacgccaccaccggcgccgccggcgaccacaccgccagctgcgccttcacctccttctga</cdnaseq>

Protein Sequence

<aaseq>MYACMEGSQLETACLPAALYAPLCPYTPPSPPSFLAPLPSLQHK LPQLPQLVHDHAAATGTNHGVMFSSDHGCLYPLLPGIPFCLDSGCGAAACDDDKPAGF AHLGSAEADTSAAAARVDSEIAAAATATTCHGPNSWWKGTEKGKMKVRRKMREPRFCF QTRSDVDVLDDGYKWRKYGQKVVKNSLHPRSYYRCTHNNCRVKKRVERLSEDCRMVIT TYEGRHTHTPCSDDATTGAAGDHTASCAFTSF</aaseq>

Gene Sequence

<dnaseqindica>6292..6475#826..981#627..712#203..529#tctctgtctctctttcttctagctctctctctctctctctctctctcatggtcatcgcttcccttttaacctaaagaaagagatctttcttggcatctcgatcgtcttcgatctctctctagctagctatacctcaccggcaatccaagctgcatgatctcttgtagagcatactactagtagctagttaattagttgctgcatgtatgcgtgcatggaagggagccagttggagacggcttgcctccctgccgcgctctacgcgccgctctgcccgtacacgccgccttcccctccttcctttcttgcgccattgccgagcctgcagcacaagcttccccagctgccgcagctggtccacgaccacgccgccgccaccgggacgaaccatggcgtgatgttctcgtcggaccatggctgcctgtacccgctgctcccggggatcccgttctgcctcgactccggctgcggcgccgccgcctgcgacgacgacaagcccgccggtttcgcgcacttgggctccgccgaggtgatcaattagccttcaatcgatctcaatttggtcatggtatgccgttctttaattacttgttgcttacaatcttggatctcgatcgatcgatcaggcggacacatcggcggcggcggcgagagtggatagcgagattgctgcagctgccaccgcaaccacttgccatgggcctaattcatggtgagtacgatgatcgatcacctcgtcctagctaacaccttgaattgaggttgtagcctcctgttgattagggtttgatgaggtaataataggccagattgactgatgggcaggtggaaggggacggagaaggggaagatgaaggtgaggaggaagatgagggagccgaggttctgcttccagaccaggagcgatgtggatgtgctggacgacggctacaagtggaggaagtatggccagaaggttgtcaagaacagcctccacccaaggtatatatatacacgaaacataatacataaattgagagatatgcaacccctagaggttcttccacagctgctaatataattaacagaagtctaccatagctgcctccatagctaatatgctcgaaacaagatcagcgggatcagaatcgatccattgcctatctttttttcccggttacatggaagatgcataccagtgcacaccgttaaatatgtacaccaccacactcacacactcgcgaatgcggcccctaacacaagatcgaagagagggagaacagcgacaattcctattttaagtattaatttgcctatcttgaatcacatatatattatatagtttatctggggtgaggtttaactagttttgtggcaatatggttgtgcaactatagttgaattacatgcttcacaatagctataatattaaatggagaattgcttctttgttaatctttatagatcaaataaaagagctttcacaaatctaataacttgattacatgagtgcgaattcaccctttaaaagaagaaagagtgaatgcagatttttgtagattagttgacgactaattaaggatcagtttgcacctagcctactcttgctatgatgttacatgtgtgtatgtgtgtgtacactgcagattcctacaggaattatgcaagagaaatgtccaaatgcactagaggaaccataaaggaatatttttttaatagatgaaaagggggaaaacaattttaataacttaagtggatatccacccatctgtttcatgttaactaaatgaatataaaaattttcaaaaaaaaattgacatgatagattgatatatgtaatatgtcactccaccaacatgcaagtttaaattcaacttctacaagttataataaaaatgacatatttaactctaattattagacgtatattcatggtttgatttgttatttttgttataacttgtagaaattgaatttaaactttcatgttcgtagagtgatatattttatattaatctattttatcaatttttttcataattatttatttaacatgcaataaacggatggacatccacctgagtgattagaatccatctcaaaaaaagaggggggagggagagagagagagagagagagtgggaatgcatataaattttgaaaacgaggatcttgagctcaactcctttggttcttttttttttccaaataattccaaacatgatgtttgagttcatgtttagaacactagaaaaatgaagaaaaggaaagatttcataggaatctctccaaccattcctacaatctaatgatggtgaggattcggtacttttcccacatattgtcgaaactagaattcggcaatataaagggatagcgcacgagacctaacagtgaatggatgcggagacaagaatttggataggttcaggccctctcgataaaaggtaccctactcctattttaggattttacccgctatgtgtagtattaatctgatgatctggtgtgaatccctgtgttcatgccccttggagaaggcagggctctctgcccgccttatataggttggggggccagggttacaaagaagaaacctagccagacacggcatcagtttcctaatctattacataatatatggatgtggcccacctcctatctctagtagaatatggaggccgtgtgggtacccggtaggccggtacccatattctccacacatattttccgcaaaatttcttcattcaaaacacaacatgataatagagggttcgtggatagatgatggtacggtgctggaatattgcttagggatatatatgctggcattgcatctacacagaaattttttagaggaaaaagaaccggtctgtagttatagaaattgtccaccttaatttgtgacacatcgatcatcttatgctttgaatagtatcgataaaacatcaaatagatatatgtttaattgttcagaagtaaacggtcgatttaatttgccatgcatatatctttggagtattatatgttttacacaacagttttggactgaattgcatgcatgtaagctgatctgattaacaaacacgcgcccatttctggcacatttgatttggactagaagatggaaggcatccttataatgacaaagaaccagaaaatattccaaaatttaactacccatttaatttattgggacttattttacagtaattagtcgtgccaagtgaatctagctaacatttgtatactatatatggcatccattaattcttgttgacaagaagcctgaactttatgcatcatgttgcatttgttgaccgaagataagtaacgagtagtttatggtattgaaaatatgggaacactacaaaatacggtctcttcaggaaaaaaaattcctaagtgtaatacgtcgatatatcatagatatcagtgaaatcagagacggatccaaaacaagatttaaggggggactcatttccttattacttcttcaatcctcctatttttcattttctccctatttttctcctttcatcttcccttttatcaacgatgatccagtggggcagaagggacttaagtccccccactacccacaatggatccacccctgtcagtgatcgaaactccatgtggccattctcaaagttcatatttgcatatgtcatgtgtgtttcatatatacactataagcatcagcatgagctggtgaactttgctgaaagagtataccatgcaataataatgcaccatgcatgccacagtatgatgcatatatttctactaaagaaaaaaaaacgagatatctagagcatcgaatccctatgctaattattagtatccctgaacacctgagtttaaccctatgttttggcacgggtacctaccgaaccagagactgccacctgattcagaaaagccgattttgaaaagaaaaaaaaaataaagccgctactattctcttttctgcttggtctaagttctgatcatgcgtcatctttatggcactagtaaaacctatcatgatttttgatctgcagcgctaggacaggcgcttgcacatccacctgtgtgcatatggatgcaccgggacaaatggtgcacacattttcagattgcaatatttttcttcagagatacttagtacccgtaagaaggggaagcccctgttagcagcttgtgcatgatttcttcctgtagtatatctctgcaatcctatggttttaggtatagtttgagtgataaaattgatatgcaagcaagcacataagtccaacgaaaacagcgtatattcagtgaaaactcatagtaattgaatagcagagctcctgcgtcacgttcaaacataaaaatgaaaactaacagtctaaaataccactccctccgtttattaataacggatacattcatatcatgttcaaagtttgaacaataataatttctatattattatgtttatacatcaaaagtcatattattagatttattaccgctaccattcaaaaaagaccacattttagcccatctcgtttgtcctacaaagacttcattttggagcaataaatgcatcggagtttgctaaagtacgggataaatacattgtagttttctaaggtgaaggatattctagcattttttattgtattggtatgtgcctaaggaattggcattttttcgggtcattttgaaaaacatttgtcctagggggataacactggaacgagatctagcccgattcgaggacaccctcgaagggaaagcaagcactttcgaaagcaggggttatggactaaacatagagtttttttgggatggggaaatagtatcatattttcataatagttgaacaaagtcatcgatgatatttattttcgggaaaatatttattttcgcagacacctaggtgcagacgggcaagacctccgcacgaaaaaatcctttttatagtagtgatcctagcaaaaaaaaaagagggggggggggggggtcaaagtatgcatgtcttggtcaaaactgtgagttacaccattcatgtctgtaattcgatggttgaggtggggcaaggcgcgggatgtgggtgttcgggttaaacagagccactatagcattattttttgctaggatgaccgaaggatttggcccccacacattagtaatggtgtaactaaaatgtcatcgtttaggagagaatgcgctactcctgcatggtagtaggaacttttatgatgttaaggcaagagaaagtagagaggaaaaaaaaaattgtttgttgattaccagacggcctgattaatagaaaactttatactatttacacatttcatatatgctatctatagaactaaagtatttcttatactactgtatgagttattaatttgtatatcgtctaagatataacatgaaaaaattatatagacaatagttcatgcccttagaagttataactctccatgtttcctagctatgaattgctctaggcgaaaacaatatttcctagtaaataaattgcaaggattttgattttatctatagcagttcacagtacttattaagagatatatggggagttctgttgtgagaattggtgccggtgtgcttgacttctagtctagtttcttttggatttacatgccctaagggtcttattagccccattttctcaatgtacaaatgatgcatgcatcctctctttcaggaaatggtggagctcttattagcctcattttctgaaagagaggatgcatgcagtatttgtccttccatatatttgagtattgagcccaaatttgagctcattattagctattataccccgtatgaaacttaattagtattcagatgtatgcatgatcagttacgagtcggtgatcatgacatgcggaaattgcgtacacattaaatgtttttcttatttgtgtaacacaatttttttctaataatatattagcaaaaaaagggttcatgtcaattaaaattgtctccccccttttttttttgtttataattaaccttgcccatttcatcgtacaatattcatgatgaactcttgctgagtacgtgacagcactagtagtgctcatcagtttgagcatgcaggcatgtcaccaggccagtagtgccatttcagatcagctagcagcatccgctgctgacgctcttcttcatttgtttgtgattgcagtttctctgtagcatgcatacaatgaatcgctctctctctcagcttgctgaccagtccgtacttaatctgtgttggtgtgcgcgtgtgtactgtttgtgtgcaaattgtgcatgcaaatgcaggagctactacaggtgcacccacaacaactgccgcgtgaagaagcgggtggagcggctgtcggaggattgccgcatggtgatcaccacctacgagggccgccacacccacaccccctgcagcgacgacgccaccaccggcgccgccggcgaccacaccgccagctgcgccttcacctccttctgacgaacgcatgcttatgtacatggatcggtgatggattattgttctctgatctgatggtggcaattgggaaatcgaagaagcagggatcgatgtaaaatgaaaatgtactaggaaagcttttagaactcttatggatgctatttaatttcctggtcaatcagctagccgatcgatcaacacgttgcatgatattcagtctaattatgaatgaaaatgtagtaggaagcttaatt</dnaseqindica>

External Link(s)

NCBI Gene:Os04g0545000, RefSeq:Os04g0545000