Os09g0533900

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Revision as of 07:33, 21 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os09g0533900| Description = Similar to CEL5=CELLULASE 5 (Fragment)| Version = NM_001070306.1 GI:115480354 GeneID:4347685| Length = 4201 bp| Def...")
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Gene Name

Os09g0533900

Description

Similar to CEL5=CELLULASE 5 (Fragment)

Version

NM_001070306.1 GI:115480354 GeneID:4347685

Length

4201 bp

Definition

Oryza sativa Japonica Group Os09g0533900, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 9

Location

Chromosome 9:21808093..21812293

Sequence Coding Region

21808536..21808865,21809155..21809321,21809507..21809654,21809803..21810240,21811035..21811318
,21811975..21812194

Expression

GEO Profiles:Os09g0533900

Genome Context

<gbrowseImage1> name=NC_008402:21808093..21812293 source=RiceChromosome09 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008402:21808093..21812293 source=RiceChromosome09 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggggtccaagacgaaggggtgctgcgggtggctgatcgtggcgctggtggcgtcgctggtggcgacggcggcggtggtggccatcatgaagaagaaggtcggcggggggagcgggcgcaagctcaagccgctgccggtgcccggcccgcccggggccatcgactccaagtacggcgacgcgctcggggtggcgctccagttcttccaggtccagaaggcggggaagctggagaacaaccagatcccgtggaggggggactcggcgctggatgatgggaaaccagcggggctggatctttccaagggaatgtatgatgctggtgatcatatcaagtttagtttcccgatggccttcacggcaacggtgctctcgtggtccatacttgagtatggagatcagatgagcgccacgaagcagctggaccctgcgcttgatgctctccgatggatcactgatttcctcgtcaatgcgcatccatctgacaatgtgttctacattcaggttggtgatcctgatctagatcacaactgctgggaaaggccggagactatgtctgagaaaagaccactcacacagattaacacaaagtctcctggatcagatgttgctgctgaggcagcagcagctatggcatcagcatcaattgttttcaaatccagagacactacatattctgattcacttcttcaacatgctcagaagttgtttacttttgctgatacttataaaggcctcgccagtgacacctatccaaagctccaaaactactataattctactggttatcaagacgaactcctgtgggcagcgagttggctctatcatgctacaggagaccaaacatacctcagttatgtgactgtagagaatggaaaagcttttgctgattggggaaggccaacatggttcagttgggatgacaaacttgcagggacacaggtgctcttgtcaagattaaatttctttggatccaaacagacatctaatgctgaaaacatgggactcaaaatgtacagagacactgctgaagccgtcatttgtgggctcctaccagattctccatcagctactgccagtaggactggtgggggattggtgtggataagtggatggaattctctccagcatgccacaaatgcagcattccttgctgttgtttacagtgactacatgctcacatcgcaaacagcagcagtgcaatgcagtggaaagtactacagtcctacagatatacgcaattttgctatatcacaggctaattacatcttgggagacaacccaatgaagcttagctacctggttggatatgggagcagctacccacagcaggtacaccacagaggggcgtcgatccccgctgatgcaaagacaggctgcaaaggattccagtatcttcattctacgagcccaaacccaaacgtcgccatgggagccctcgtgggcgggccgttccagaatgacactttcgtcgactctcgggacaatgctgttcagacagagtcaagcacttacaacagcggcaccctcgttggtcttctttctggtctggtcacaacttcctctgtggcgcagtcgttcacctag</cdnaseq>

Protein Sequence

<aaseq>MGSKTKGCCGWLIVALVASLVATAAVVAIMKKKVGGGSGRKLKP LPVPGPPGAIDSKYGDALGVALQFFQVQKAGKLENNQIPWRGDSALDDGKPAGLDLSK GMYDAGDHIKFSFPMAFTATVLSWSILEYGDQMSATKQLDPALDALRWITDFLVNAHP SDNVFYIQVGDPDLDHNCWERPETMSEKRPLTQINTKSPGSDVAAEAAAAMASASIVF KSRDTTYSDSLLQHAQKLFTFADTYKGLASDTYPKLQNYYNSTGYQDELLWAASWLYH ATGDQTYLSYVTVENGKAFADWGRPTWFSWDDKLAGTQVLLSRLNFFGSKQTSNAENM GLKMYRDTAEAVICGLLPDSPSATASRTGGGLVWISGWNSLQHATNAAFLAVVYSDYM LTSQTAAVQCSGKYYSPTDIRNFAISQANYILGDNPMKLSYLVGYGSSYPQQVHHRGA SIPADAKTGCKGFQYLHSTSPNPNVAMGALVGGPFQNDTFVDSRDNAVQTESSTYNSG TLVGLLSGLVTTSSVAQSFT</aaseq>

Gene Sequence

<dnaseqindica>3429..3758#2973..3139#2640..2787#2054..2491#976..1259#100..319#ccctgcagtagaagaggaggcggcgagcgagcgagacgccgagccgagcagcgccgcggaggcgtcgtcgtctccggtgggttgcaggaggcgaatgcgatggggtccaagacgaaggggtgctgcgggtggctgatcgtggcgctggtggcgtcgctggtggcgacggcggcggtggtggccatcatgaagaagaaggtcggcggggggagcgggcgcaagctcaagccgctgccggtgcccggcccgcccggggccatcgactccaagtacggcgacgcgctcggggtggcgctccagttcttccaggtccagaagggtgagttgccaccgccaccaccaccaccactcgctccacttcttcttcttgcccccgccgcacgcactggttcgctgctgctcaccacctcgccaccgcaatgcttcttccgcaattcggcggatttcgcggcgaatgcccttttctttcttggcgcccagcttggaagctcttgtgtgtgtgtgtgtgtgtgttcgtttagtatctccgcatttggggtggtagttggagaggttgatacggttgtttcgggtgatctgatggtttctgcttctgggtggtgaagaatttcaccaatcgttactcagtaggaaagttgacgagtcggtagatttctcaccgatttcagtggccgtgaccttatagttttgacttttttttagtgtgaattttacgctcttctgcaagagcagttcctttctgtggtgattactatgtcgttggcaaatgtgtgctcgcagatttcacttaaatctgttaaccaaactgtgaatttagcttatttagctatggatattggagttttggttgttccagccaccgatgcagtgttttggaggctgaatgagcacaatctctaacccttttcagcttcagtagctctaaagaagtacttatttgctaaattgttggtaatttctgttggtattgtgcagcggggaagctggagaacaaccagatcccgtggaggggggactcggcgctggatgatgggaaaccagcggggctggatctttccaagggaatgtatgatgctggtgatcatatcaagtttagtttcccgatggccttcacggcaacggtgctctcgtggtccatacttgagtatggagatcagatgagcgccacgaagcagctggaccctgcgcttgatgctctccgatggatcactgatttcctcgtcaatgcgcatccatctgacaatgtgttctacattcaggttagagctgtagcataattctttatactatgtaaaaattttgagtgatctatgcttgctttagttgtggtttattgcggcctggcggcatttcagactttcagtagagggaaagtttggttggtaagaagcaagccaggtcagatgtcgtgatctggacacctaatagttaggaggtacttcgttttcggcttgatacgtttaaatcggtttaaatcaacacatttgttgcaagttcaatgtccatgccctttccagtttgtctttatagttgcattcttttcacactatcagtatagacttctccgtatgatatacccacaatgttccaaggtagtccttttttttccctttgaaatttggatggtagtcccatacttaattgagtaaagttcaacacatctcttaatatgtagagttagcccttgatggtagggggatgggtgtttttgaaagttgaagattaggggatgccagatgtttttatgagttgaatttctgtatgtgtggaagttttatcactcaatgcttgcgttgacatgtttagtcatgcttacttgggtaggttgtacagcacattcaatacctgatgaatagaatacaatgtacataagatgatgaaatcagatataacttataagctagtttattgttcatgttaattgccttaagtccatctaacaaagaacacattatatatttctttgaacagatcagtacaatagatgcagcaacctcaccttgttgaacgtcttgatattaatcaactaacgtgtataactgttaccttgtaggttggtgatcctgatctagatcacaactgctgggaaaggccggagactatgtctgagaaaagaccactcacacagattaacacaaagtctcctggatcagatgttgctgctgaggcagcagcagctatggcatcagcatcaattgttttcaaatccagagacactacatattctgattcacttcttcaacatgctcagaagttgtttacttttgctgatacttataaaggcctcgccagtgacacctatccaaagctccaaaactactataattctactggttatcaagacgaactcctgtgggcagcgagttggctctatcatgctacaggagaccaaacatacctcagttatgtgactgtagagaatggaaaagcttttgctgattggggaaggccaacatggttcagttgggatgacaaacttgcagggacacaggtttgcaattttgcatgaacatttaagaagcaactttgttattcgggaactaggaatgaagctacgccttttatcttcctttaataacgttagttcactcttcagccaaagaatataactttcaatgcattttgtctattatgtgcaggtgctcttgtcaagattaaatttctttggatccaaacagacatctaatgctgaaaacatgggactcaaaatgtacagagacactgctgaagccgtcatttgtgggctcctaccagattctccatcagctactgccagtaggactggtggtatgttgaaattcttccactgtttgatcttatattatgggtcaatacatggagaatttatgcataggcttttgttgttcactttttttttacattaaatagtattttctggggttagacagaatatgtgcaaactgtattttgtttgcctgtgatttaattatatgatggtgatttttgtgcagggggattggtgtggataagtggatggaattctctccagcatgccacaaatgcagcattccttgctgttgtttacagtgactacatgctcacatcgcaaacagcagcagtgcaatgcagtggaaagtactacagtcctacagatatacgcaattttgctatatcacaggtgaactacagaaaaccttgcaagatactgaaattccagtttgccatgttgaagttcaacaagaaacaccataaaacattccttgtatttacatgcctacctttttttgtcacgagccatcggcacattgtgacacactgcttgcctttgtggcttaactacattctatgataactttggttgtcatgactcatgacctacacactatttctgctctgctgtgttggtagcatctgaccaggaaggtgttgtgcagtaagtttctaacatatattctgttgcatgtcaggctaattacatcttgggagacaacccaatgaagcttagctacctggttggatatgggagcagctacccacagcaggtacaccacagaggggcgtcgatccccgctgatgcaaagacaggctgcaaaggattccagtatcttcattctacgagcccaaacccaaacgtcgccatgggagccctcgtgggcgggccgttccagaatgacactttcgtcgactctcgggacaatgctgttcagacagagtcaagcacttacaacagcggcaccctcgttggtcttctttctggtctggtcacaacttcctctgtggcgcagtcgttcacctagagctctctcagagtttgggcaatggctttgaccaaccgggaggatatacatgtagccatgtacaatgagagatttttggcgtgaccaaaggcaatgtgccatcagcgaaacgccttcacggtgttcttcgttgttcatcttttgggtgatgggtggttagcagtagtagttcttgtgccatagtgctattgtttatacaaatactgctgcgtagttgcatccggtttgctggtgtactatctgatactacgagtgttgtatttgtaggacggattccatttgttgattctaaaatgatctctggtagcttgtattgatgatctgtaaaatccctcccaagatgaacattgcactgaacatgtgagatcacatggggagagggaagtattaatccagtttgttcagtatgttcatacataaattggacatcttttcagtatggt</dnaseqindica>

External Link(s)

NCBI Gene:Os09g0533900, RefSeq:Os09g0533900