Os04g0573000

From RiceWiki
Revision as of 19:57, 22 July 2012 by 124.16.129.48 (talk)
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Function

Please input function information here.

Expression

Please input expression information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this gene

Please input related labs here.

References

Please input cited references here.

Structured Information

Gene Name

Os04g0573000

Description

Major facilitator superfamily MFS_1 protein

Version

NM_001060146.1 GI:115460021 GeneID:4336724

Length

6389 bp

Definition

Oryza sativa Japonica Group Os04g0573000, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 4

Location

Chromosome 4:29261099..29267487

Sequence Coding Region

29263439..29263491,29263778..29263898,29264059..29264370,29264468..29264572,29264674..29265128
,29265343..29265644,29265816..29265994,29266483..29266673,29266822..29266955
,29267102..29267340

Expression

GEO Profiles:Os04g0573000

Genome Context

<gbrowseImage1> name=NC_008397:29261099..29267487 source=RiceChromosome04 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008397:29261099..29267487 source=RiceChromosome04 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggttaattttggaaagaagttgatggctgatcaagtagaagaatggaaaggatactatattaactacaaattgatgaagaaaatgttgaagcaatacgttcagcagacccaacttggtggaaaagatcgagagcaagtacttaaagagttctcaagaattcttgatgaacagattgaaaggattgtactttttctgctacaacaacaaggccaccttgctaataggattgaggaattgggagaacagcgtgctgctcttctagaacagcatgatatatcccaagtttttcaactacgagaggcttatagagaagttgggcgagatcttataaagcttctccgttttgttgatatgaatgctactggtataaggaagattctaaagaaattcgataagcgctttggctataggtttacagactattatgtcaccactcgtgcaaaccatccttattctcagcttcaacaagtctttaagcaagtggggattgtagctgttgtaggagctttatcgcgcaaccttgcatatctgcaagatcatgaaggaagtgttttgtccatctatgatcatccatcagttaccttaaaggaccctatcatagaccaagtaaatcatgcggtacaaaaacttacacatgcgacgagttttctgcaattcttaggtcaacatgcacttatcatccaagaggacgtgcaaagtgggtcggaggatcttgtcgatgatcaaagttaccatttcatgtctttgatactcaacctagtgaacacctttctttacatggtgaacacatatatcattgtgccaactgctgatgactacgctgtaagccttggagctgcagcgacagtttgtggcgtaatcatcggatcaatggcagttgctcaagtgttctcctcagtttatttcagtgcatggtcaaataggtcatacttcagacctcttgtattcagtagcatcatgttattcgctgggaatctgctatatgcattagcatatgacctgaattctctgacagttctcctgattggccggctactatgcgggttaggctctgcaagagctgtgaaccgtcgatatatcagcgattgtgtgcctctcaaaatcaggctacaggcctctgcaggattcgtcagtgctagtgctcttggcatggcatgtggccctgctcttgctggtttactccagacaagatttaagatatactcactcacttttgatcagagcacgttgcctgggtgggtcatgtgcattgcttggcttgtttacttgctgtggctgtggatatcattcaaagagccgggacactttgctaagagttcagacacggcacagcctgctgaatctggccatcaagtcaatgctaatctggaggaaggtctagcgcaaccattgcttacaggctcagaagagggacaagaccaaaatgctgaggataatgacgataacgaagaggagtctaaaaattctcacgggccagcaacttcaatcagttcagcatacaaattgttgacaccatctgtgaaggtccagctattgatatactttatgctcaagtacgctatggaaatcttgctctctgaatcaagtgtcatcaccacatactattttaactggtctacaagcgctgtggctatctttttagcgattcttgggtgtactgttctccctgtcaacgccattgttggaagctacattacaaatttattcgaggacaggcaaattttggtggcatctgaaatcatggtcctcattggtataatcatgagcttccgttacacccctcactactccgttccgcagtacgtcttgtccgctctcatcacatttgtgtttgctgaggtcctcgaaggagtgaacctgtcgttgctttcacgagtaatgtcgtcgaggctcgcgcgaggaacctacaacggcggcctcctgtcgacagaggccgggacgctggcccgtgtagttgcagacgcgacgattaccgcggcgggttatctaggcccggacctcctgctcaacatcactctgctgccacctcttgtcatctgcatagcctccctcgttgcaacattctgcacatacaacaccctgtactaa</cdnaseq>

Protein Sequence

<aaseq>MVNFGKKLMADQVEEWKGYYINYKLMKKMLKQYVQQTQLGGKDR EQVLKEFSRILDEQIERIVLFLLQQQGHLANRIEELGEQRAALLEQHDISQVFQLREA YREVGRDLIKLLRFVDMNATGIRKILKKFDKRFGYRFTDYYVTTRANHPYSQLQQVFK QVGIVAVVGALSRNLAYLQDHEGSVLSIYDHPSVTLKDPIIDQVNHAVQKLTHATSFL QFLGQHALIIQEDVQSGSEDLVDDQSYHFMSLILNLVNTFLYMVNTYIIVPTADDYAV SLGAAATVCGVIIGSMAVAQVFSSVYFSAWSNRSYFRPLVFSSIMLFAGNLLYALAYD LNSLTVLLIGRLLCGLGSARAVNRRYISDCVPLKIRLQASAGFVSASALGMACGPALA GLLQTRFKIYSLTFDQSTLPGWVMCIAWLVYLLWLWISFKEPGHFAKSSDTAQPAESG HQVNANLEEGLAQPLLTGSEEGQDQNAEDNDDNEEESKNSHGPATSISSAYKLLTPSV KVQLLIYFMLKYAMEILLSESSVITTYYFNWSTSAVAIFLAILGCTVLPVNAIVGSYI TNLFEDRQILVASEIMVLIGIIMSFRYTPHYSVPQYVLSALITFVFAEVLEGVNLSLL SRVMSSRLARGTYNGGLLSTEAGTLARVVADATITAAGYLGPDLLLNITLLPPLVICI ASLVATFCTYNTLY</aaseq>

Gene Sequence

<dnaseqindica>2341..2393#2680..2800#2961..3272#3370..3474#3576..4030#4245..4546#4718..4896#5385..5575#5724..5857#6004..6242#acccctccctcagcttcccttcccatctgcccgtcttcttcttcttcctcctcctcctgccctacccgcggccgcgcgatataaatacatcaccctccccatccgcctctccgccagcaaaccagcacagccgtacgccgccggcaactgcgttcgcgcgagcgcctgtccgcgttgtacatatttgtgagtaatccgtcacctctgtacgcagcacgcacatgccgccgccaaagcgcagatgattccagtctttccctacttttgaatctgtgcctgatgaatctgcgtcgtcgtgctgtagcactagcgagtgtttcccttgcgacgtagagtttgctgatgttcatctaattagcccggaggactcgggaatcagaattcaccgtggtgtcagggagaaaaagtggatcgaacttcggatcacctggtaccatttgtttacggtatgttccttgtttctttctgcgtgccttagttcgaggagtaaaagtcgcggtttgttatatagattattaccgggaagtgttcgctgaaatttggatttgcaattatcttcattcttcggttcgtgcggtgtgatctaaaatgttttgcggttctgcttctctgtgtggctcctgttacattgttctcccttcggcggtttggccgtcccatacatgatacaacatgggaattgtgggtaatgttaccgtgcgcaaatcttcaaagaaactaatgccaaacgaaggcgaggtctgaggggttccaacttccagtttatagctgcatgttgtcctaaaggtgcttattttcaccaagtgcttattttttgttagtaatcaagcacgataatgacttgtttattttctggaaataagaaggggcgaagttaatttgttggtcaggatttggtggatatctgtggatccttctttatttcaacattgaccatttcccatcacgctagctgactttattttttttaagaagggtaaataaaaaaaatcacgctagctgactagttgtacttttctcgtccaaacaaacttgtagaaggaagagaatattttttaccttttcacctcaaattaaacagccatacaacttgcaagatatatactccctcaggtcataaatatgtgatgtttaggataatatttggtctattacttacttccgaaatgcatatagtttaataacaagaaaaattatatgcatagagtggcctagaaaagttacaatagcatgaacttattggattttatagacttactctaatataaaattgatggtcaaaattttaatggtctgatcaaatcttgttttaaacgtaaaatattttttattggaggaagtagtttttaggaatctgtaagataatgaacaagggaaagaactttcaagacaattagttctttttctggcaaagtgaaagagaagttgttgaagtactctagccatatgattgattacgtgtcctaagtaacaaggagctcctctaacaaaaggggaccatatgctgccacgtcactgtcagttttgtgttatgtacctggcttatcaacttagagccaatcgctaacactttatgaacaatcattcagtactgatgttgatctgcatattttaactactgtgattttttttaatctccgattgatctgtctctacttgtgactgtaaagttctgtccagctgtcttttgttaataataacttgctttttgctatgctctcttacgacgaatattcagcacgttttatgtttgctcgacttctatagttagacactttttaaatatcacgcgttcagactaaatagtgatacccttctctgtttttcttcttgagaggatattcaaaaacttccagtggctgccttaatcatttctctacagtgtactttatcagtaaaatccttacggcacatgtactgtcttcatttcatcttctgttctcattgatattaactgttagaggttactcgttgaggatcaatcaactctgtccatctgccgtacgtgatgaacgacggaaaaaaaaacaaaggcaaggatgggttggatacgaaacattggattgctgttttgtttgatcacaaatgctaaacagtgtccgcgtgctgaaaattgactaaagttaacttgcttcgctacctttcctttagaatagttatccatttggtagtagcaaatatctgaataagttaattactcaaaaagtaaacataaagatagctgtagacatgttttttttgctgaaataatagcttggtgcaaatgtgtgcttttgttgatctttctacatctaatcatttatatatgttcggttttagatacaggtattgaacgacaagatggttaattttggaaagaagttgatggctgatcaagtagaagaatggaaagggtatgcttttggtacttattttttatgaacaaaataattttcttcattgattacacactactatgtaaaaaaaattatatgccttcctattatgatacctaaaaatgaaacagaagttgagtacccatcaaactattacgtcaatctataatgatttttttaatgaactatgatgaaatttgaaggttatgatgtggactccataagcaattttcacaagccagttcctccatattaacaaatttcctgcagaaatcttatgatttcctcatcttgatattactagatactatattaactacaaattgatgaagaaaatgttgaagcaatacgttcagcagacccaacttggtggaaaagatcgagagcaagtacttaaagagttctcaagaattcttgatgaacaggtatatatgcaaacatttctttttttaattaattataaagatatattattggatcaacttgtttatttcatctattgttggtttaataaagaactcgtgtttcttaaaatggtatcattgttttgattagctaaaattcatacttgctgtttcacttcagattgaaaggattgtactttttctgctacaacaacaaggccaccttgctaataggattgaggaattgggagaacagcgtgctgctcttctagaacagcatgatatatcccaagtttttcaactacgagaggcttatagagaagttgggcgagatcttataaagcttctccgttttgttgatatgaatgctactggtataaggaagattctaaagaaattcgataagcgctttggctataggtttacagactattatgtcaccactcgtgcaaaccatccttattctcagcttcaacaagtctttaagcaagtggtaatttttctggcattttacatgattagggacacttgattttcttctgtctctcacagctaaccagcattccttttgtccacttctaccaatgcaggggattgtagctgttgtaggagctttatcgcgcaaccttgcatatctgcaagatcatgaaggaagtgttttgtccatctatgatcatccatcagttaccttaaaggttttatgtcttgactgttacattatctgaatttggaactagttttctacatatcttttgcatgatgtaagagtgtaatgtgactattttctgatattcaggaccctatcatagaccaagtaaatcatgcggtacaaaaacttacacatgcgacgagttttctgcaattcttaggtcaacatgcacttatcatccaagaggacgtgcaaagtgggtcggaggatcttgtcgatgatcaaagttaccatttcatgtctttgatactcaacctagtgaacacctttctttacatggtgaacacatatatcattgtgccaactgctgatgactacgctgtaagccttggagctgcagcgacagtttgtggcgtaatcatcggatcaatggcagttgctcaagtgttctcctcagtttatttcagtgcatggtcaaataggtcatacttcagacctcttgtattcagtagcatcatgttattcgctgggaatctgctatatgcattagcatatgacctgaattctctgacagttctcctgattggccggctactatgcgggtacgtagaatttatttttctatttgttttaaaccctattactcagtacctcttgctaatgaattgtaatcatgttgaggtaggactacaatttagtatggtaaatattgctggctcttaatatttaccaccaaccctgtttgtcttcttctcgattattcatcagtatttctggattgaaatttactgatcataatacaatactcatatgcaggttaggctctgcaagagctgtgaaccgtcgatatatcagcgattgtgtgcctctcaaaatcaggctacaggcctctgcaggattcgtcagtgctagtgctcttggcatggcatgtggccctgctcttgctggtttactccagacaagatttaagatatactcactcacttttgatcagagcacgttgcctgggtgggtcatgtgcattgcttggcttgtttacttgctgtggctgtggatatcattcaaagagccgggacactttgctaagagttcagacacggcacagcctgctgaatctggtaagttctcaacccacaggaagagtgactagcaaatatattccttccgaaaactaaacacaacatgattctgttgatttggaagtgcaaatgttgcctgtaaagaatttttttttatcagcatcaggatttttgttttctaatatagagttattttttgattaaaaataggccatcaagtcaatgctaatctggaggaaggtctagcgcaaccattgcttacaggctcagaagagggacaagaccaaaatgctgaggataatgacgataacgaagaggagtctaaaaattctcacgggccagcaacttcaatcagttcagcatacaaattgttgacaccatctgtgaaggtttcctcctttcccctcgtcaacttcttttcttttattccagatcaacgttgcagcatacacgaaaaacaagttcacaaactaatcaagttgggttcttataactataaatgaactgcagaacataaaatgaagagaagtatctcggtgttagcatcttactgtccacaacaataatagctatgctgcggttgtatttacacttccaaaaatacaatttcaagaaaaaaaaagttcttcattagcattacttcgattgctttttttcaagctattggttagctttataatatatttaattaagccctataagcaataaatcgtctgtcatttcatctctttcaaactaggcctaatactgacacatgagtgctccgcactgtcaagattactctcaactctcatgttaagtttattttttatccgttggatgcatcatctttctatgttttgttttgcaatacattacatggacgctcatttctcaggtccagctattgatatactttatgctcaagtacgctatggaaatcttgctctctgaatcaagtgtcatcaccacatactattttaactggtctacaagcgctgtggctatctttttagcgattcttgggtgtactgttctccctgtcaacgccattgttggaagctacattacaaatttattcgaggacaggtaatttttatgctcgttaagtgcactttgtatccctcgcccaaaaaaaggattttgaaggtctaaataaagtccattcaaaatgatttcatgaaagcatgtaattaagggtattgttaacggctgctttgtacatggtattttgcaggcaaattttggtggcatctgaaatcatggtcctcattggtataatcatgagcttccgttacacccctcactactccgttccgcagtacgtcttgtccgctctcatcacatttgtgtttgctgaggtcctcgaaggtatgtaaacgcaaccacctcaaaatgatcgttcatcacacagcccttcagcagcatgacatctgacggcacaaagcgagatctgaatcaagcaaacgcatgctgttgctttaaccactgttttccatttctgacgaacattgcaggagtgaacctgtcgttgctttcacgagtaatgtcgtcgaggctcgcgcgaggaacctacaacggcggcctcctgtcgacagaggccgggacgctggcccgtgtagttgcagacgcgacgattaccgcggcgggttatctaggcccggacctcctgctcaacatcactctgctgccacctcttgtcatctgcatagcctccctcgttgcaacattctgcacatacaacaccctgtactaaggaagttgcctctctctgcacactgtagagccggttaaactttattcatgctcacattgggttgtattttacatgtatctgcatgcggtagcattctttgtttgtacaagtccttaaacagttcaataaaatgttcttctgtaaatc</dnaseqindica>

External Link(s)

NCBI Gene:Os04g0573000, RefSeq:Os04g0573000