Os04g0581000

From RiceWiki
Revision as of 19:58, 22 July 2012 by 124.16.129.48 (talk)
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Function

Please input function information here.

Expression

Please input expression information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this gene

Please input related labs here.

References

Please input cited references here.

Structured Information

Gene Name

Os04g0581000

Description

Similar to Flavanone 3-hydroxylase-like protein

Version

NM_001060186.1 GI:115460101 GeneID:4336764

Length

6698 bp

Definition

Oryza sativa Japonica Group Os04g0581000, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 4

Location

Chromosome 4:29730072..29736769

Sequence Coding Region

29730147..29730347,29730613..29730860,29735611..29735938,29736261..29736506

Expression

GEO Profiles:Os04g0581000

Genome Context

<gbrowseImage1> name=NC_008397:29730072..29736769 source=RiceChromosome04 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008397:29730072..29736769 source=RiceChromosome04 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggcaacgacgcagttgctgtccaccgtcgagcaccgggagacgctcccggagggctatgctcggcctgagtccgaccggccgcggctcgccgaagttgccacggacagcaacatcccgctcatcgacctcgcctcgccggacaagccgcgggtcatcgccgagattgctcaggcctgtcgcacctacggcttcttccaggtcaccaaccacgggatagcagaggagctactggagaaggtgatggccgtggcgttggagttcttcaggctgccgccggaggagaaggagaagctgtattccgatgagccatccaagaaaatcagactctctacgagctttaacgtccgcaaggagacagtacacaactggagagattatctccgccttcactgccacccgctggaggaattcgtacccgagtggccctctaatccggcacagttcaaggagattatgagcacgtactgccgagaagtccggcaactggggctccggcttctcggcgccatctctgtcagcctcggcctcgaggaggactacatcgagaaggtgctcggcgagcaggagcagcacatggctgtgaactactacccgcggtgtccggagccggacctgacctacggccttcccaagcacacggaccccaacgccctcaccatcctcctccccgatccccatgtcgccggcctccaggtcctcagggacggcgaccagtggatcgtcgtcaacccacgccccaacgctctcgtcgtcaacctaggcgaccagatacaggctctgagcaatgacgcgtacaagagcgtgtggcaccgtgcggtggttaacccggtgcaagagcgcatgtcggtggcatctttcatgtgtccgtgcaacagcgcggtgatcagcccggcgaggaagctcgtcgcggacggggacgcgcccgtgtaccggagcttcacctacgacgagtactacaagaagttctggagcaggaacctggaccaggagcactgcctagagctcttcaaaggccagtag</cdnaseq>

Protein Sequence

<aaseq>MATTQLLSTVEHRETLPEGYARPESDRPRLAEVATDSNIPLIDL ASPDKPRVIAEIAQACRTYGFFQVTNHGIAEELLEKVMAVALEFFRLPPEEKEKLYSD EPSKKIRLSTSFNVRKETVHNWRDYLRLHCHPLEEFVPEWPSNPAQFKEIMSTYCREV RQLGLRLLGAISVSLGLEEDYIEKVLGEQEQHMAVNYYPRCPEPDLTYGLPKHTDPNA LTILLPDPHVAGLQVLRDGDQWIVVNPRPNALVVNLGDQIQALSNDAYKSVWHRAVVN PVQERMSVASFMCPCNSAVISPARKLVADGDAPVYRSFTYDEYYKKFWSRNLDQEHCL ELFKGQ</aaseq>

Gene Sequence

<dnaseqindica>76..276#542..789#5540..5867#6190..6435#ctctcgctccccttctctcttagcttgctagctgatgtacttgccgcgatccagcgacctcgcgcttcgtctcccatggcaacgacgcagttgctgtccaccgtcgagcaccgggagacgctcccggagggctatgctcggcctgagtccgaccggccgcggctcgccgaagttgccacggacagcaacatcccgctcatcgacctcgcctcgccggacaagccgcgggtcatcgccgagattgctcaggcctgtcgcacctacggcttcttccaggtccctagctagctctcacacgcgcgctctaattaattaactgaacccgtacggcatatagcttagctagctaggttttgtgtgttcccactgcgggcttcacaaatattatgtccaaccatggcgacatcgccttgacggcattattttctccttcagtcgtcaagcctgcgtcctcttcagagctctgggctctctctgaatcatctgatgtatagatactgaagtaaaaacataaaccttcctaacttttcctttattataggtcaccaaccacgggatagcagaggagctactggagaaggtgatggccgtggcgttggagttcttcaggctgccgccggaggagaaggagaagctgtattccgatgagccatccaagaaaatcagactctctacgagctttaacgtccgcaaggagacagtacacaactggagagattatctccgccttcactgccacccgctggaggaattcgtacccgagtggccctctaatccggcacagttcaagtaagcacacactagctagatatatattatcgatcttggaaataaattaatttcagcagatcatatattccctcgtgacacggagaccttgtgctagaacacgcaaggtcaagttcgctatatcccacatgagcgcgtccgttggatgtcccacctgagatatagcacaacccaaaatcagcaaaactggccgtcaatccatgcgttacacattattatcgatattatgctaaacttttaatcatattaaatttgttggttgtctttttaaccatatatagcgacttagattaaacaagaataaatgtccgttaaagatcaacgaagctaaaccgagagtttaagataggtacaacatatcctattctataataactaaaactaattaaagagtctatgtgtatttataatgacatgtttgatttaacataaattctcagtccaaaatgtgatactttaactaattaacatatgagcttacgcagagtgtcaaattatatagtacagatgttgataaatatttagttgttctcacccatgatctatgcatatggttttggtatcaaatccaacaatttgataccactcaaacgattagtgcaggcgcgctctagattagagttgggctttatgttgattgtaagggtgtttctctgggtgatctcgtctgtgttcctttgttggtctagcgccggtcggtcacgcttagcgcggtggccggtccgatgctagccttctcccagacctgtgtgttggcactatcgatgtgtgggtggtggtatacttttttcttttttcctagttacgaccttgcatggttgtaatcttgtaattttttcctgctctatcaatagaatttcgcaccgtctcgtgcgagtcattcaaaaaaaatccaacaatttgtcagggcacacatatatataataagaactaaaatgctgaccttcttgccccccccctcccatttttttaatccttaagtggccggccgcatgaggaatagttactactttctccgtttcacaatataagtcattctagcatttcccacattcatattaatgttaatgaatctagacatatctatctatctagattcattaatatcaatatgaatgtgggaaatgctagaatgacttatattgtgaaacagagggagtatttcagtttgagcaaagaaattggccagactgtatttacagcctgcacactctttccttcaaggaagtgtgtccgctcatctcaatgggtctgttctatgcatggcatgcgctatatacaaggcttctacaaacgtagcgagcttgcggcaagctagctagtatcccaattgccaccacaaatataagtattttatgaatagcgcgcgataaacatgacaaacctttgattttacttttgttgccaaatgccaatagaaaaaagatcacaagattgatggcataaaaatgctaattacaaactaattaaataaatttatcgtgaaacaaactaattacataatagtatgcaaccttttctatttaaaataatttaactttatcaataatactattggtcaaagtaggacacaagagactatatcaatatctaacatggttatatttgtaaagggtgagagtactacaaaatgtactcctaactagctcctcgtaactactccctctattcacaaataatcagcatatatggtttatgcagcgataccaatacattcctacataccacttaaattggcatcgatcaacatgcaacactgtttcgtgtgtcctgcacatacatcaagggtaatttagacatgatattgcttgcatgcatgcatgcaccacaatagtaatagttagtttaagagatttgctccggttcaacaaaaagtatcttgaggtattagtacctcacggtactaaatcatttctgatcgttggatttagttgggcaggatgaatattgttagatccaacgatctgataccgtgaggtatcgatacctcgaaatactttttgttagaccaaagcaaatctcttagttgaatggtactacatggaacaatgcatgcaaataaccacttaatacttcacagaaaaacaaaaagtcacaagtaccaaatatgctcatcatttctgaataacttgaaaaagttaattatttgtgaatgaatggagtacttccttaaaagaatagctactagttcgtaaaaaaaaaaaccatagcttagatgctgaaagctgtttactgtcgttgaaaaaaaaaaagcgagtacagtgcatgccacagctgcagctgtttagatctctttattttaagactgttctctctttctttaagactactgttctcacttattttgatgttctcctgtagccctgtgacgttgtagacttgtggtgcatgcacctagttcaaccaaattcacatgtctccatttgtataactactaattatagctttatacggtaatggatggtcacgtacttacgatgctaattaacggcaaaaacattaaatacgtgcgtacgtacatctagctagctaattagtaattaattaagttgtcgcaccttctttcaagttgatagatttcatagtatatccctggctaattaatatgtgtatttgtccggcggtccgtgtttcacaatcgaccggtccacaactttgttagtatgcacctcatattaaacttagagttttagctcatggcccgctcaaatataatggtgtgaccggccggccatgcatgtatggcgagcacttcacatgttcaaacgatgcatacatgtatagatcaattcattttctccagaaatacgcagtgcagtcgatagataattatcatgccaagtcgattgacacttttgacagttatcatgagctcatacccctcggtgggccataatggtcgctacgcgtacacgtaggtgctgcttttttgctggtatgtataataagaggaatttttacggttattgagaaaatacttagataccaaaactttacactaaaagcttttagtaccttgaggtacttactacctagaggtacgtaccaaattttacaaacagagatttgctacagtccaacaaaaaataactcaaggtactcacggtatcaaatcgttttcgatcgttagatataacgatattcatcctgtctagctaaatctaacgatctaaaatgatttgataccatgagataacgatgcctcgagctatttttattagactgaagtaaatctcatagaaaatatggtacctctgcataccttcttaaggatagtaaattacccatataataaagatgggattaagtgcccgtacgtagcgtatatggtccagaacacaattaagtgcggcgtgcattatatgtgtactggtcgaatggaatatgcatgcacataaaggagtacttgtgtcgctcaattaatttgcagaagggagtggctcagacaagctccacccttacaggggaatcattatttcatttttgttgaatactagctaatatggtcctcaattttcacttcgagatcattttagtcccagatattctatatttaaaaaaatatcctaaaactttgtcacgtagctttgtatagtccttgagcccattaaaaaggccacgtagaaatgtctcgtcattctctcgtgcaatgccgggtttttgttgttgcaaatttcacaatatgtaacttaaaaggtgagatccacgtccattgcattggcacatgaatgaataggaccgaggaggaataagatgacagagaacaatatttttcttccattccttttggcctatttatatacatagacaactcaacgtatgaactatattatatagcctaccctcataatgtgagattttcgttttccattggctgcccttaaatatccattctaccttcatgtacagtagaataaaaaggagggaatttatggatggaagttagctaaataaggggttgtatatatattttaaaacaaaatttaaacgttagaaatataatttacaatggagtgagtatttgttaagaaaagaaggaaatttccggaaacaacgatgtcccaaaacctcgtctagctacctaatccaaaaacttctacgttttactttggaaacagtatccctcaacctccgtttagtgtcactccttctgtcccattttaagtgtagacgtgggtttctatatccaacgtttgatcgtccgttttatttgaaattttttatgattaatatttttattgttattagacgataaaaatatgaatagtgtgctttatgtgagatttatttttttatttttcttatatttttaaaataagatgaacgatcaaatattaaacacgaaaacccataacaacacttaaaatagaacggatggagtagttagcaaatcttccacatgccgttatagtcgcacggtccgcggtcgcagccatgcctagaagtctacaacaaccgagcaatacagttcaatcacgtagaagactaatcaccctaccagagacatgcatgaacttgcgagatttttactcgagacaaatcgtggaaaaggtaaaccgcacccttgacctcgcaaaaagaaggggaccgattcttcatcggtctcctacttcgtctgttaattccaaaatccaatgtgctggagtaaaatcaagctagctgaagtccaggacagcaactagtttcagtaaaacgccaaaattaaggcgtggacgcttaattttccgttgcactttttcctggcatgcagggagattatgagcacgtactgccgagaagtccggcaactggggctccggcttctcggcgccatctctgtcagcctcggcctcgaggaggactacatcgagaaggtgctcggcgagcaggagcagcacatggctgtgaactactacccgcggtgtccggagccggacctgacctacggccttcccaagcacacggaccccaacgccctcaccatcctcctccccgatccccatgtcgccggcctccaggtcctcagggacggcgaccagtggatcgtcgtcaacccacgccccaacgctctcgtcgtcaacctaggcgaccagatacaggtcatatagtacataatcatactacattcatcccaaaatataacaacttttaagtagatgggacataatctaatattacaaatctagacatgaggtttgtccatattcatagtactagattaaaattgctatattttgagacggatgaagtattaattatgcattctccacttatttcaaaataaattaatctagtactaatatattctagtaatataaatctggataattatgctattaatttattttgagccggaaggagtataaatttctgtcattgcagtgtgtgtaccgtcaggctgaactgctgatatttatgcaggctctgagcaatgacgcgtacaagagcgtgtggcaccgtgcggtggttaacccggtgcaagagcgcatgtcggtggcatctttcatgtgtccgtgcaacagcgcggtgatcagcccggcgaggaagctcgtcgcggacggggacgcgcccgtgtaccggagcttcacctacgacgagtactacaagaagttctggagcaggaacctggaccaggagcactgcctagagctcttcaaaggccagtagtaacgactaatgaactcgatcgtgtgcagaaacttcagacttgcgcttcactacccaagttaaaattgcttgccgctcgttgctgcagtgcagatatcctcgtcgtttgacggttgtgtgtggttgtctggtgcacttaatttatcggttcagtacttaattatgtcgggcaatgctttacttattttatcgatgttatgtatcacataatgctttggttattcctaaaacttccaataaaattggtatgcctaattaccctc</dnaseqindica>

External Link(s)

NCBI Gene:Os04g0581000, RefSeq:Os04g0581000