Os04g0589600

From RiceWiki
Revision as of 19:58, 22 July 2012 by 124.16.129.48 (talk)
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Function

Please input function information here.

Expression

Please input expression information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this gene

Please input related labs here.

References

Please input cited references here.

Structured Information

Gene Name

Os04g0589600

Description

Glycosyl transferase, group 1 domain containing protein

Version

NM_001060234.1 GI:115460197 GeneID:4336813

Length

2923 bp

Definition

Oryza sativa Japonica Group Os04g0589600, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 4

Location

Chromosome 4:30201568..30204490

Sequence Coding Region

30201657..30201750,30202355..30202471,30202745..30202938,30203019..30203124,30203225..30203372
,30203518..30203654,30203753..30203919,30203998..30204291

Expression

GEO Profiles:Os04g0589600

Genome Context

<gbrowseImage1> name=NC_008397:30201568..30204490 source=RiceChromosome04 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008397:30201568..30204490 source=RiceChromosome04 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggcagcggcggcgggaggagtcgccggcgagccgtcggggacgaggacgaagcagcttaaggtcgccgtgatccaccccgatctcgggataggtggtgctgagagattgatagtcgatgcggcttgtcagcttgcggtccatggtcatgatgttcatgttttcacatcacatcatgacaaaaaccgatgctttgaagagactgtttctggtccatttgaagttaaagtatatggagatttcttgcctcgccatattttttaccgcttccacgctatctgtgcatatcttcgctgcatttttgttgcaatgtgtgtgctactttggtggccctcatttgacatcatattagtagaccaggtttcggttgtgattccactgcttaaactgaaggcaaaatccaagatagtattttattgtcactttcctgatatgttgcttgctcaacatactaccatgcttcggaggttgtatcgcaagccaattgacatgattgaagaaacaactactggtatggcagatttgattctagtaaacagcaagttcactgcaacaacatttgccaggaccttttgcagccttcatgctagaggagtcgagcctgctgttctatatccagctgtctctgttgaacagtttcaggaacctcatgcttataagttgaatttcctctcaattaaccggtttgagagaaaaaagaatcttggtcttgccatttcagcattttctctgcttcgctctgttgcttctatgctacctggtgatgctcgacaggaagtaaccttaacagtagcaggtggatatgataagcgtctcagagaaaatgttgaataccttgaggagctcaaaagattggcagcgagtgaaggggtttctgaacatgtcaaatttgtgacatcttgttcaacttctgaaaggaacgaacttctctccaactgcctttgtgtgttatacactccaaaggatgaacatttcggtattgttcctctggaagccatggccgcatataaacctgtaattgcatgcaacagtggtggtccagtggaaacagtcataaatgacgagacagggtttctctgtgagccctctgcccctgaattttcaaaagccatgctgaagctcgtgaacgatcacgatctagcagttaagatgggtaaacaagcaaggggccatgttgtgcagaagttctcaaccaagacatttggtgaccttctgaacagctatgtccttaatgtgtaccatcagaggattgagtga</cdnaseq>

Protein Sequence

<aaseq>MAAAAGGVAGEPSGTRTKQLKVAVIHPDLGIGGAERLIVDAACQ LAVHGHDVHVFTSHHDKNRCFEETVSGPFEVKVYGDFLPRHIFYRFHAICAYLRCIFV AMCVLLWWPSFDIILVDQVSVVIPLLKLKAKSKIVFYCHFPDMLLAQHTTMLRRLYRK PIDMIEETTTGMADLILVNSKFTATTFARTFCSLHARGVEPAVLYPAVSVEQFQEPHA YKLNFLSINRFERKKNLGLAISAFSLLRSVASMLPGDARQEVTLTVAGGYDKRLRENV EYLEELKRLAASEGVSEHVKFVTSCSTSERNELLSNCLCVLYTPKDEHFGIVPLEAMA AYKPVIACNSGGPVETVINDETGFLCEPSAPEFSKAMLKLVNDHDLAVKMGKQARGHV VQKFSTKTFGDLLNSYVLNVYHQRIE</aaseq>

Gene Sequence

<dnaseqindica>90..183#788..904#1178..1371#1452..1557#1658..1805#1951..2087#2186..2352#2431..2724#agcgagagcgagttagcgagcagagatccacggcccgcagcggcggcggcggcggcggcggccgaagcccatctggttacgcgagggagatggcagcggcggcgggaggagtcgccggcgagccgtcggggacgaggacgaagcagcttaaggtcgccgtgatccaccccgatctcgggataggtacgcctctactctctctcccccctcctgttgctcctgtcgatgcttgggtgaaccctcatctctcgtgggcagaattttggtagatccggttgagtccccgaaacgattggttgcgtgctactttgtaaattggtcgatatgtagcaattccgagtccacgcggtggaagcatcagtagatttgaggaaccgttgctgcctgagcttgtagctgggatatttgttgggttcctcaattttgctcaaggttcgacgtatgcttagttgcttgctgcaattacggggtagtctgagtgttagggaaagatttttcttcttcttcacttccatactgtgttgatacttctagttaagtagtgagtagtgatgccctagaattggcttattttttggggaagccgttgcacggtttcatttgaatgtaggacttgcggcttgtttattatatgcaggtgagatttttaagaacattttcgagaaaaaaaatgttgtagcagtattgcagcaggttataggacattgaccaatggactaagtgtggcagcatttctagcattgtactagatctcaattgttcaaagaaaacatatgtttttgtgtaggtggtgctgagagattgatagtcgatgcggcttgtcagcttgcggtccatggtcatgatgttcatgttttcacatcacatcatgacaaaaaccgatgctttgaagagactgtttctggtaaggatctaaactctatctgaggtgaatgttgcttataactctcttactatggtagttgcagtacctatttgtgttaaagacttactatgtactatgactgatttgatgtggacttgtagaggatatgcatatattcctatgtgaattgtcgattgattacgtacaaaatttcacaaaacgtttcctcggataccctactcaaatcgctcaatagtgtgtagggattcttatgccaatggaaactttacttgattttctattgtcctgcaggtccatttgaagttaaagtatatggagatttcttgcctcgccatattttttaccgcttccacgctatctgtgcatatcttcgctgcatttttgttgcaatgtgtgtgctactttggtggccctcatttgacatcatattagtagaccaggtttcggttgtgattccactgcttaaactgaaggcaaaatccaaggtattgatcccttgctttatgtgatcagtatgtttccactgtagatatatgttgataacttctttttcccgtgtattcagatagtattttattgtcactttcctgatatgttgcttgctcaacatactaccatgcttcggaggttgtatcgcaagccaattgacatgattgaagaaacaactactggtatggtcttgttcatctagaactgttgcctgctatgttttttaccattccctagtgtttgttctatctgtagtgcttatcccttttttgtatgtattaggtatggcagatttgattctagtaaacagcaagttcactgcaacaacatttgccaggaccttttgcagccttcatgctagaggagtcgagcctgctgttctatatccagctgtctctgttgaacagtttcaggaacctcatgcttataagtaactgcatgcttgtatatctctctgtaactcgcttaggtttcattttatttaaaaaaaaatagtatagtgtgaagtgtaagcatttttctcaccttctgcaccttcaggtctagccaaatttaaccatcatctttctgcgcaggttgaatttcctctcaattaaccggtttgagagaaaaaagaatcttggtcttgccatttcagcattttctctgcttcgctctgttgcttctatgctacctggtgatgctcgacaggaagtaaccttaacagtagcaggtaatttcctttccactacaggttgaatgttgcatcgtcactgcattatgaattaccaactggcaactactgtttacttacaaaagattatgcttaaggtggatatgataagcgtctcagagaaaatgttgaataccttgaggagctcaaaagattggcagcgagtgaaggggtttctgaacatgtcaaatttgtgacatcttgttcaacttctgaaaggaacgaacttctctccaactgcctttgtgtgttatacactccaaaggtaaatatctggcatgtcttttgattctcaacaacatgagaattttcccataataaacctgcgtctgacattttgcaggatgaacatttcggtattgttcctctggaagccatggccgcatataaacctgtaattgcatgcaacagtggtggtccagtggaaacagtcataaatgacgagacagggtttctctgtgagccctctgcccctgaattttcaaaagccatgctgaagctcgtgaacgatcacgatctagcagttaagatgggtaaacaagcaaggggccatgttgtgcagaagttctcaaccaagacatttggtgaccttctgaacagctatgtccttaatgtgtaccatcagaggattgagtgatccccaattcggtgtcggcaatgccgtggaacacttggaatagaccatcattttcatgttttttccttttcttttgttacttctgacttcgatgtacacgcatgcgatagagtattatatacggatgaatagtgaaaacgactttgtaatgttaccatttgtggcaatgacaggaaaaaatatatatttgggccgtctg</dnaseqindica>

External Link(s)

NCBI Gene:Os04g0589600, RefSeq:Os04g0589600