Os04g0602400

From RiceWiki
Revision as of 19:58, 22 July 2012 by 124.16.129.48 (talk)
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Function

Please input function information here.

Expression

Please input expression information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this gene

Please input related labs here.

References

Please input cited references here.

Structured Information

Gene Name

Os04g0602400

Description

Similar to Maltose excess protein 1, chloroplast precursor (Root cap protein 1)

Version

NM_001060307.1 GI:115460343 GeneID:4336889

Length

4973 bp

Definition

Oryza sativa Japonica Group Os04g0602400, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 4

Location

Chromosome 4:30795475..30800447

Sequence Coding Region

30795862..30795944,30796145..30796206,30796310..30796372,30798013..30798131,30798212..30798313
,30799104..30799193,30799367..30799657,30799734..30799889,30799982..30800215

Expression

GEO Profiles:Os04g0602400

Genome Context

<gbrowseImage1> name=NC_008397:30795475..30800447 source=RiceChromosome04 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008397:30795475..30800447 source=RiceChromosome04 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgtcgtcgtcggtgtcctccgtgcgcctcccgctgcgggcggctcctcccctctacggccgccgcgagtggagggccgatggggcccgggcgccgtctcccgcgctcgtcgccgtgaagccgctgtcgtgcagggcgcccgcgtcgtaccgctccgcgctgctcctccaccgccgccgccggtacgcgctgcccccggttgccgccaccgccacctccaagcccgtcctcaaggacccgaagaagtatcaggaatgggactctctgacggccaagttcgccggcgccgccaatgtccccttcctcctcctgcagcttccccagatcatcctcaacgcccgtaacctcctcgccggcaacaaaaccgcgctcttcgccgtcccatggctcgggatgctcaccgggctgctcgggaacctgtcgctgctgtcctatttcgctaagaagaaggagacgggggcggtcatcgtgcagaccttgggcgtcatctccacctatgtagtcattgcccagctcgccatggcagagtccatgccattgccacagttcgtggccacttcagccgttgtggccgctgggctgctcctgaacttcctcaattactttgggtggctcccgggaacactctggctgctgtgggaggatttcatcacaataggtggccttgcagtgcttcctcaggttatgtggtcaacatttgtccccttcatccccaatagcttactgcctggcataatctctggttctttggctgccacagctgtcgtaatggcaagaatgggaaagctttctaagggagggattaactttgttggatcattatctggctggacggccacacttctcttcatgtggatgccagttgcgcagatgtggacaaattacctcaacccaagtaacatcaaagggttgtcagctttcactatgttgcttgcaatgattggaaatggacttatgattcctcgtgctgtatttatcagagatctcatgtggttcactggttctgcctgggcatctttcctacagggttggggtaacttggcctgcatgtactgcttcgatagcatcagcagagaatctttcttggcaacaacatttggacttcttctgtggctaggatttactctctggagagataccattgcccatggcaacagctcacccgtgacttctttgaaggaacttcttttcggaaagtga</cdnaseq>

Protein Sequence

<aaseq>MSSSVSSVRLPLRAAPPLYGRREWRADGARAPSPALVAVKPLSC RAPASYRSALLLHRRRRYALPPVAATATSKPVLKDPKKYQEWDSLTAKFAGAANVPFL LLQLPQIILNARNLLAGNKTALFAVPWLGMLTGLLGNLSLLSYFAKKKETGAVIVQTL GVISTYVVIAQLAMAESMPLPQFVATSAVVAAGLLLNFLNYFGWLPGTLWLLWEDFIT IGGLAVLPQVMWSTFVPFIPNSLLPGIISGSLAATAVVMARMGKLSKGGINFVGSLSG WTATLLFMWMPVAQMWTNYLNPSNIKGLSAFTMLLAMIGNGLMIPRAVFIRDLMWFTG SAWASFLQGWGNLACMYCFDSISRESFLATTFGLLLWLGFTLWRDTIAHGNSSPVTSL KELLFGK</aaseq>

Gene Sequence

<dnaseqindica>4504..4586#4242..4303#4076..4138#2317..2435#2135..2236#1255..1344#791..1081#559..714#233..466#gcgggggtcgcgcgggtccatcggatcgggagcgcgcggcgaggcaggcggggtcgccaccacctgtcgcgacgcgaccgcggggggcgcgcgtctccttccttcctcccctcacctcacgctgcctccctcccatccccttcgccctcctgtccgcctcgctccccgctccctctcgctctcgctctcgccttctcgccaccgatccatccgcccccgtggcgcgccgcccatgtcgtcgtcggtgtcctccgtgcgcctcccgctgcgggcggctcctcccctctacggccgccgcgagtggagggccgatggggcccgggcgccgtctcccgcgctcgtcgccgtgaagccgctgtcgtgcagggcgcccgcgtcgtaccgctccgcgctgctcctccaccgccgccgccggtacgcgctgcccccggttgccgccaccgccacctccaagcccgtcctcaaggtacgcgcgcgtgtgctcgtcctggctggcgtctcttcgctctcggcattggcggggcaaatcgtgagtagtgtgggttggcacgcgcgtaggacccgaagaagtatcaggaatgggactctctgacggccaagttcgccggcgccgccaatgtccccttcctcctcctgcagcttccccagatcatcctcaacgcccgtaacctcctcgccggcaacaaaaccgcgctcttcgccgtcccatggctcgtacgtgtcacctcaccttcaatcccctccacattttcccccatttgttgatctgtttgttgattttgtgcctcaggggatgctcaccgggctgctcgggaacctgtcgctgctgtcctatttcgctaagaagaaggagacgggggcggtcatcgtgcagaccttgggcgtcatctccacctatgtagtcattgcccagctcgccatggcagagtccatgccattgccacagttcgtggccacttcagccgttgtggccgctgggctgctcctgaacttcctcaattactttgggtggctcccgggaacactctggctgctgtgggaggatttcatcacaataggtggccttgcagtgcttcctcaggtgagaatggccgtcctgctgtgtcacgttacagattcagcttctgcttctgctgctgctgctgctgctatgcgtaacagtgttaatttttaagagcattttcgaactgtaaaagccactccaattttaagtgtggctctgcctccctctttgattatgaaatgattatgcaggttatgtggtcaacatttgtccccttcatccccaatagcttactgcctggcataatctctggttctttggctgccacagctgtcgtaatggtacgagacactcttaccttaaggattgttttgatcaaagcttttttttaacgaaatcttgttcaaagtttcatgtgtgtttgctctactaccatctccatgccttgagaaagaaaaatagagttttaagtaatttagctgtccaaggtaaatttggggaggaaataactatagaataagccctccacttcatctccacattttctttaggtaattgttgaaaaaacttgcacatataacaccgaggtggattggatatttactattaggtataaaaggtgtgagtatataaggaaatctttgtgtaaaagtggttgcataaccaatagttatttagagaaaaggccgacagccctgcttttttatagcaagcaatgtggttgcatgaccaatagtgaagttcagttccatattaggatgcaatttacctaaagttttttttagtatactatctgttagctttatgtctattgttagcagggcactaatatcgcttccatgatttatgtagtacttgttttttttttaatttgccttttatttgtgcaaatctaaagatgccaattgcttcataaggaaaaactttggtcaataagattggtagagcaccataacactctacctagaagaatgcaagtgtatattttgctctgcatatgtctgtatttctcgatgattaacgaaaattaagactaagtatgttgtactctcatgatgtaatgcccctatttaaccatatttgctccaatcttgtgttatctcttgatttcttttggtacactaaattcaggcaagaatgggaaagctttctaagggagggattaactttgttggatcattatctggctggacggccacacttctcttcatgtggatgccagttgcgcagatggtattcaaactttcacacttgtagcacttagaatcacctaacgccaagacactaaaaatatgtttcgtgggtttgtgcagtggacaaattacctcaacccaagtaacatcaaagggttgtcagctttcactatgttgcttgcaatgattggaaatggacttatgattcctcgtgctgtatttatcagagatctcatgtggtatgctgtttatcttcaaccttggatactccttttttaaaaactagtatggtggcccgcgcagattgcgcggctagcatcattatattttctctcatataatagcatatatgttttctcaatgtattattcaaatatattaaaatgacaatacaattttaaattttgtactaactttacgaaactactaatgtgtaatattcatattgtattttatatacgtgttagttattaattatttttaatatcaaattttagttatttataaattatattcctatatggactctagactcgtcttttaatatttcttttttttattctgaattttcgttatctgtaaattgtatttctatatagactctaggctcttcttccaatattatttatttttaattctgaatttttattatttctaatgtatttctatgtggactctaaacttatctttcaatattctttaatttttaatttcgaatttcagttacttctaaattgtattcctatattgactttagactcttgttcccatgtttttttaatttcgaattttagttatttgtaaattgtatttttatacgaactctaaactctacttttaattttattatgtttattccaaattttagttagttttagattcctatatggactctatactctacttctaatattccttattttcaattccgaatttctattatttcttaattgtattcctatatgtactctatactctacttctaatattcgttatttttaattctgaatttctattatttccttaattgtatttctatatggactctagtctcctcttccaatattacttattttttaattccgaatttcaactatttctaaattgtatttctatatgaactatgttttctttttctccatttaatatgagaatttctaggccgtgagagcgaacatggaggctcctttttctactcctttaataagttaatagattcatgcactgctcttgggaaaagtatgaaataaaatcaatttctattgtaaaaaaatcacatggaacctgctttctatttgatcaacaaatataatcaagatgttcctaatcacatccttaccggtccaagagttgttgcccggtgaagagacttacagcccatagttttatcacatatgggattgttgagcctgctttatgacattgtatctgaaccaggagctcttagtgaatgaaacactagtaaatatacaaatttctacttgttgagatgaagtctgtaggaccttctaacttatataggaaacttctgctgtacatgagatgaagtcatagggcaagaccaataatggctaaccaggcaatcaagtgttttccatgtacaaagctttgtaaaaatcctcccacagtgtcctgttcattaaaatcttcagagtgcatcacacatgataacttggatgtttatttcctgaaactgggattggaaaaactatcaacaattacattcataagttcgagtgcgatctcattttatgataaactatgtatttctttctgatgttctcttgctggtcacccttgttccttcttttttttttctttttctgttgtactgcattcttacatggcccttgatcattgataccttcgatgaatttaggttcactggttctgcctgggcatctttcctacagggttggggtaacttggcctgcatgtactggtatgtttttcacagctatgacagacctgatttaccatatgagttttttgactgtaactccaacaagaatgtctaacccctgaactttatattctgctttcagcttcgatagcatcagcagagaatctttcttggcaacaacatttggacttcttctgtggctaggtttcctttcttctcaactcaagtttatttcttcataaagaaaagattcagtcaaaatccaaatatctccacctcaaacatttcagcatttctttgacgagcaatcgtagttaaatgcacaactgaattgtttgatgagctactaatctgcagggttggacttctaatcatatgcacatttgcttttgttgttttcccaggatttactctctggagagataccattgcccatggcaacagctcacccgtgacttctttgaaggaacttcttttcggaaagtgaatagaactccattatgtccatattcagcagcaaactgctgccaggcaggaagctctcctacaataattaatggtgaccggcaagaacctgttcgacattggcattattgaggtgaagcactctggtcgacaacctattgtcgtggtgaaactggaacctcccagcttgctgcttgcagaaagtggcatgtgctcctacagaaattaccaggtggccagcttgtgcatctggcagagaagggtacagtgtgtagcttttcttcttttttttttttgtaagaaagaactttatgtttctcctcttgaataagactgtcaggtcatgctggtatgggaaaatgcaaaccactggccattgggtcattggtgatgtccagcagcttcagcc</dnaseqindica>

External Link(s)

NCBI Gene:Os04g0602400, RefSeq:Os04g0602400