Os04g0610000

From RiceWiki
Revision as of 19:59, 22 July 2012 by 124.16.129.48 (talk)
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Function

Please input function information here.

Expression

Please input expression information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this gene

Please input related labs here.

References

Please input cited references here.

Structured Information

Gene Name

Os04g0610000

Description

Conserved hypothetical protein

Version

NM_001060361.1 GI:115460451 GeneID:4336943

Length

3820 bp

Definition

Oryza sativa Japonica Group Os04g0610000, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 4

Location

Chromosome 4:31313022..31316841

Sequence Coding Region

31313242..31313340,31313457..31313792,31313862..31313969,31314041..31314133,31314219..31314422
,31314500..31314750,31315627..31316839

Expression

GEO Profiles:Os04g0610000

Genome Context

<gbrowseImage1> name=NC_008397:31313022..31316841 source=RiceChromosome04 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008397:31313022..31316841 source=RiceChromosome04 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>ggggccaatgagattattagaaggcatcataagcagagaaacagagaatctgttggccgtggaatcataagtgcagaaaagacacaagaaaagcctctgaaccagttcaggcatcaggcacaagatcaacattctagctatgcttttcgtatgaagcagacacatctagatcatagagatagagttaatgaagtacaggcagattctattgatcccacagtttttagtgagtcaagatgcattgcgctgattgatgagactactgcaacgcgtataaattgcacaacggtgcactctgttggacccaaacctataaatgtagataagaatcaggcacaggctcccaactccaagcggatcatacaacaggcacaaaaacagccttcttatattgcaatttctcaagagaatgctcaggataagcatgcagatggtgtggttcatgtccaggaaaagcaattgaggactgcaagtcaagtaaaccatagacaagagacatgtgctcaactggacaatcagactgttgcaggggatagcagtgggagaattagatgcccggaaaaagaacaatcggaaccttttagctgcacaattcgcaagagaaaaacgaagagtttgttggctaattcaaattcaggtcttgaacttaggcgcagtaaacgtttggccaaagattctcctgctgcaaaagacaaaaaacacagcaaaaacaagtcttttgagcagcaggtttctcaaaatgaccaagtatctgctgcagtcatggatactgaatcaatacacagggatcctgttgagaggcaagctgcatcttcaactggccacatgccagctgccatcacagacagtgaaccatcagaaaatgagcctgatgatctgtatatgccttctccagatcagagtttgtctaactctccagatatcgacagaatcattaacagcatatgccctagttcatcccctaggcatatgacccctgaaaaagtctctaatgagtttgacaacgtccagttaactacaccaccaccttccgatatcgacatgtctgatcctgagcattttgcatgtaactacgttccgcaggaagttagaaaggcccttgcgaagctaagatctagtaattcatcatttgagcgtgcgatgtcacaggcaagttctggtgatgtgcatgcattaagtgattctgaagattgcgacgaacgctggaatgttggtaccaagaggaatcaagggtgtggtcgtggtcgtggtcttacactctgtctcaaggtgtggaatttgcctaagggtgtccgcattccagtgctattgaacgcttcgggggagcctgttgggaaagaggcaggcaccttatctacctttctgggtgcattagcacgtgacggaatattggcacctctgacacatcaagattggagacgtgttccagagaaaaacaaggatgtgatgtatcatattgtcaagctcaaatttgacattgctccagctgctgaattctggatcatgaagtgtataggaagaaagtggaagagttggaaagctctcttaaaacaaaaacattatgatactcatgaaacggtggaggaatgccttgctgatcaaaatcctcgcgttctcaaggaacagtggcaatatttagttgcatattggggtacggaaaaagcgaaggctgtgagtagtcgaaataaagcttgtcgggcaaatgtaaccgctacgcatactgcaggaacaaagagctttgcacggataattgaggaggagaagcagaagcggcctaacaatgaggagcccactgctgcggatttgttcctattgactcatacacacagaaacgggaagcctatgaagaaggaaaaagctgatatcattgcacgagtccgtgaacaatctcataagcaagccgaatgctcaggaagtgactctgcagcacacaaagtcggacttgaatcctgctccattggcctgcgtgggaagaggggtcatcgtcggaaggcagtcttgcaggcatccttcaaggaagctgaggaggctaaaagaaaggctgaagacgaggcagcgacgctgaggaagaagatggtggcaatggaagaaagtcagaagaaactgcaagaggatttggcgaatatgaagagtacagttagtgctatgcagaagacgacgtcaactggtgacctatcggatggtcaaacgcaaaactttccacaggtccaaaattcacgaagcgctcatgagattttgcagccatatcttgactactctgcactgtacgatccttctgcctcccctagtccacgatttcgatga</cdnaseq>

Protein Sequence

<aaseq>GANEIIRRHHKQRNRESVGRGIISAEKTQEKPLNQFRHQAQDQH SSYAFRMKQTHLDHRDRVNEVQADSIDPTVFSESRCIALIDETTATRINCTTVHSVGP KPINVDKNQAQAPNSKRIIQQAQKQPSYIAISQENAQDKHADGVVHVQEKQLRTASQV NHRQETCAQLDNQTVAGDSSGRIRCPEKEQSEPFSCTIRKRKTKSLLANSNSGLELRR SKRLAKDSPAAKDKKHSKNKSFEQQVSQNDQVSAAVMDTESIHRDPVERQAASSTGHM PAAITDSEPSENEPDDLYMPSPDQSLSNSPDIDRIINSICPSSSPRHMTPEKVSNEFD NVQLTTPPPSDIDMSDPEHFACNYVPQEVRKALAKLRSSNSSFERAMSQASSGDVHAL SDSEDCDERWNVGTKRNQGCGRGRGLTLCLKVWNLPKGVRIPVLLNASGEPVGKEAGT LSTFLGALARDGILAPLTHQDWRRVPEKNKDVMYHIVKLKFDIAPAAEFWIMKCIGRK WKSWKALLKQKHYDTHETVEECLADQNPRVLKEQWQYLVAYWGTEKAKAVSSRNKACR ANVTATHTAGTKSFARIIEEEKQKRPNNEEPTAADLFLLTHTHRNGKPMKKEKADIIA RVREQSHKQAECSGSDSAAHKVGLESCSIGLRGKRGHRRKAVLQASFKEAEEAKRKAE DEAATLRKKMVAMEESQKKLQEDLANMKSTVSAMQKTTSTGDLSDGQTQNFPQVQNSR SAHEILQPYLDYSALYDPSASPSPRFR</aaseq>

Gene Sequence

<dnaseqindica>3502..3600#3050..3385#2873..2980#2709..2801#2420..2623#2092..2342#3..1215#atggggccaatgagattattagaaggcatcataagcagagaaacagagaatctgttggccgtggaatcataagtgcagaaaagacacaagaaaagcctctgaaccagttcaggcatcaggcacaagatcaacattctagctatgcttttcgtatgaagcagacacatctagatcatagagatagagttaatgaagtacaggcagattctattgatcccacagtttttagtgagtcaagatgcattgcgctgattgatgagactactgcaacgcgtataaattgcacaacggtgcactctgttggacccaaacctataaatgtagataagaatcaggcacaggctcccaactccaagcggatcatacaacaggcacaaaaacagccttcttatattgcaatttctcaagagaatgctcaggataagcatgcagatggtgtggttcatgtccaggaaaagcaattgaggactgcaagtcaagtaaaccatagacaagagacatgtgctcaactggacaatcagactgttgcaggggatagcagtgggagaattagatgcccggaaaaagaacaatcggaaccttttagctgcacaattcgcaagagaaaaacgaagagtttgttggctaattcaaattcaggtcttgaacttaggcgcagtaaacgtttggccaaagattctcctgctgcaaaagacaaaaaacacagcaaaaacaagtcttttgagcagcaggtttctcaaaatgaccaagtatctgctgcagtcatggatactgaatcaatacacagggatcctgttgagaggcaagctgcatcttcaactggccacatgccagctgccatcacagacagtgaaccatcagaaaatgagcctgatgatctgtatatgccttctccagatcagagtttgtctaactctccagatatcgacagaatcattaacagcatatgccctagttcatcccctaggcatatgacccctgaaaaagtctctaatgagtttgacaacgtccagttaactacaccaccaccttccgatatcgacatgtctgatcctgagcattttgcatgtaactacgttccgcaggaagttagaaaggcccttgcgaagctaagatctagtaattcatcatttgagcgtgcgatgtcacaggcaagttctggtgatgtgcatgcattaagtgattctgaagattgcgacgaacgctggaatgttggtaattcacacttctattgtccttcactcttattattatgtgttgcaccatggagaataagttttcttagaaagagatattttctttgggattatgaatcttattaagcaacaacccatatcctttttaactcagtaggctattacgcttcactcttattattgtgcctcacattagggcgaataagcctccatataaagataaaatatttttctaaggatgacgaatcttattaagccctggtacatatccttttgaactcagtgagccattgtccttgctcttattattgtctattttacactgatgagaataaacctccttataaagataaaataatttcattgggattatgaatcttattaagcaatgatgcaaatccttttaaactcattaagctattctccttcactcttatccgttacactgctgagggtaaacatatctataaagaattcttggggattagaagtgttttctttctttggaaattaggagcagcgattatgagtcttattaagctataatacatatcattttgaactcagtaagctatctgcccatgattaccatagttggagggttttttttttattattttttttgcattttatccatgctgaatccacagaagaatggagactcgtgggtaccgagaggaacttgtcacactaaaatattcattttcccatgtagaccactaaacatataataaattggatttgtttgaaacaaactgttcacactcccctgtttcattatcaaatcctgttcatttccttattcatactctgtctataaagaacaccaccatttgacagctgttcttgttatgctcatctgattgtctcattgtttttttttcctttcaagcaggtaccaagaggaatcaagggtgtggtcgtggtcgtggtcttacactctgtctcaaggtgtggaatttgcctaagggtgtccgcattccagtgctattgaacgcttcgggggagcctgttgggaaagaggcaggcaccttatctacctttctgggtgcattagcacgtgacggaatattggcacctctgacacatcaagattggagacgtgttccagagaaaaacaaggatgtgatgtatcatattgtcaaggtatgcagttttatatggttactgctgctttctgtgcctttagtttcttctctgacaccccttgtttgttgatgtagctcaaatttgacattgctccagctgctgaattctggatcatgaagtgtataggaagaaagtggaagagttggaaagctctcttaaaacaaaaacattatgatactcatgaaacggtggaggaatgccttgctgatcaaaatcctcgcgttctcaaggaacagtggcaatatttagttgcatattggggtacggaaaaagcgaaggtaacaccgaccattctattttcttgccatcttgtttgcaatttggcaggcttgttaaatgattggtaactttatctttgatcaggctgtgagtagtcgaaataaagcttgtcgggcaaatgtaaccgctacgcatactgcaggaacaaagagctttgcacggataattgaggaggaggtaattaaaatcctgttgctttgctttcactatcaccaatgacgtgctaattgtattaccgcatgcaacagaagcagaagcggcctaacaatgaggagcccactgctgcggatttgttcctattgactcatacacacagaaacgggaagcctatgaagaaggaaaaagctgatatcattgtgagacacaaggaagtaatttatactaataattttctggttgagatctgagttttattttccatgcaggcacgagtccgtgaacaatctcataagcaagccgaatgctcaggaagtgactctgcagcacacaaagtcggacttgaatcctgctccattggcctgcgtgggaagaggggtcatcgtcggaaggcagtcttgcaggcatccttcaaggaagctgaggaggctaaaagaaaggctgaagacgaggcagcgacgctgaggaagaagatggtggcaatggaagaaagtcagaagaaactgcaagaggatttggcgaatatgaagagtacagttagtgctatgcagaagacgacgtcaactggtgacctatcggatggtcaaacgcaaaactttccacaggtaaatggagtatccagctataatccattttgcacctccagaaagtatctatcattgtaacagcttatcccactgtttctgatccggaatccatgcttcctcctcatccattccaggtccaaaattcacgaagcgctcatgagattttgcagccatatcttgactactctgcactgtacgatccttctgcctcccctagtccacgatttcgatgataatcgcaccacagacaatgccaatatgcatggttgattccatcttgatcgtggaatggtgtatgaaacgaagaggtttagacgtttagttggccgttcatgtgtaatgttggctctctaaacccggagcccagtgcttgtactcttctgttttattggctactgtaacaggatactctcttctgttttgtttacactgactagaactacttcacttcgc</dnaseqindica>

External Link(s)

NCBI Gene:Os04g0610000, RefSeq:Os04g0610000