Os04g0634000

From RiceWiki
Revision as of 20:00, 22 July 2012 by 124.16.129.48 (talk)
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Function

Please input function information here.

Expression

Please input expression information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this gene

Please input related labs here.

References

Please input cited references here.

Structured Information

Gene Name

Os04g0634000

Description

Curculin-like (mannose-binding) lectin domain containing protein

Version

NM_001060533.1 GI:115460795 GeneID:4337122

Length

4141 bp

Definition

Oryza sativa Japonica Group Os04g0634000, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 4

Location

Chromosome 4:32652661..32656801

Sequence Coding Region

32652765..32653079,32653161..32653293,32653403..32653643,32653747..32653963,32654180..32654304
,32655180..32655302,32655463..32656780

Expression

GEO Profiles:Os04g0634000

Genome Context

<gbrowseImage1> name=NC_008397:32652661..32656801 source=RiceChromosome04 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008397:32652661..32656801 source=RiceChromosome04 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggcgaaggcaacgactggcatctgcctcgttgacgtcatcctcttctcgttcttcctcgttgctcccagagccttcgccgccgccgcggccgttaccgacacgctccgcggcggccggaacatcaccgacggcgagacgctcgtgtcggccgacggcacgttcactctggggttcttctcccccggggtgtcagccaagagatacctcggtatatggttcacggtctcccctgatgccgtttgctgggtggccaaccgagacagccctctcaacgtcacctccggcgtgctggcgatcagcgacgccgggatcctcgtcctgctcgacggctccggcggcggccatgtcgcgtggtcgtcgaactcgccctacgccgcctcggtggaggcgcggctgtctaactccggcaacctggtcgtccgtgacgcaagcggcagcaccaccacgttgtggcagtcgttcgatcacccgtcgaacaccttgttgccgggcatgaagatgggcaagaacctgtggaccggggccgagtgggacctcacgtcgtggcgctcgccggacgacccgtcgccgggggcctaccgccgcgtgctggacaccagcggcataccggacgttgtcctgtggcaagacggcgtcgagaggtacaggtcggggccatggaacggccggtggttcagcggcaacccggaggcggcgacgtacacgacgaacctgatcacgttccaggtgaccgtcagcccgggggagataagctacggctacgtctccaagcctggggcgccattgacgcgctccgtcgtgctcgacaccggcgtggtgaagcggctggtgtgggaggcgacgagccggacatggcagacgtacttccaggggccgagggacgtgtgcgacgcctacgccaagtgcggggcgttcggcctgtgcgacgccaacgcgccgtcgacgtcgttctgcggctgcctcagggggttcagcccgacgtctccggcggcgtgggcgatgaaggacgcctccggcggatgccggcgaaacgtgccgctgcgctgcggcaacacgacgacgacggatgggttcgcgttggtgcagggagtgaagctccccgacacgcacaacgcgtcggtggacacgggcatcacggtggaggagtgcagggcgaggtgcgtggccaattgctcgtgcttggcctacgccgcggcggatatccgaggaggcggcggtggtagcggctgcgtcatttggaccggcggcatcgttgatcttcggtatgtcgaccaagggcagggtctgttcctgaggttggcagagtctgaattagatgagggtaggagccggaagtttatgctctggaaaactgttattgctgcaccaatatctgccacgattattatgctcgtactgctacttgctatttggtgcagaaggaaacacaaaatctcagaaggtatacctcataatcctgctacaacagttccttcagttgatctgcagaaagtgaaggcggccactggaaatttctcacagagccatgtgattggccaaggaggatttggcatagtttacaagggccagttacctgatgggagaatgattgctgtaaaacggctacaccaatcaaccctcaccaagaaaggcaagaaggatttcacaagagaagtggaggtgatggctaggctcagacacggcaaccttcttcgtctccttgcctactgcagcgaaggcagcgagcgtgtgctgatatacgactacatgtcaaacaggagtttggatctctacatatttggcgattctggcctccgactcatgctcaactggagaaaaagattgggcatcattcatgggatcgccaatggtattgcgtacctgcacgagggatcaggcgagtgcgtcatccacagggatctgaagcctccgaacgtactgttggacgacagtttcagacccaagattgcagattttggcaccgccaagctattcacagcagaccagccagagccttccaatctcaccgttgtggtttcaccgggatacgcatctccggagtacgcatggcgaggggagatgacactaaagtgcgatgtctacagctttggagtcgttcttctcgaaacccttagcggacagaggaatggtcccatgtacagtctccttccacatgcatgggagctgtgggagcagggcagggtgatgtccctccttgacgcgatgatcggtctccctctctcagtctcagggcctgatcacaccgagatggaagatgaactggcgaggtgcgtgcagatcgggctcctgtgcgtgcaggatgcgccggaggaaaggccggccatgtcggcggtcgtcgcgatgctgaccagcaagagctcacgggtggatcgtcccaagaggccaggggttcacggcggcagaagcaggccaccgttgcgcgagtcggagctgctgggcgccaccgacattgacgacgatctcacgtag</cdnaseq>

Protein Sequence

<aaseq>MAKATTGICLVDVILFSFFLVAPRAFAAAAAVTDTLRGGRNITD GETLVSADGTFTLGFFSPGVSAKRYLGIWFTVSPDAVCWVANRDSPLNVTSGVLAISD AGILVLLDGSGGGHVAWSSNSPYAASVEARLSNSGNLVVRDASGSTTTLWQSFDHPSN TLLPGMKMGKNLWTGAEWDLTSWRSPDDPSPGAYRRVLDTSGIPDVVLWQDGVERYRS GPWNGRWFSGNPEAATYTTNLITFQVTVSPGEISYGYVSKPGAPLTRSVVLDTGVVKR LVWEATSRTWQTYFQGPRDVCDAYAKCGAFGLCDANAPSTSFCGCLRGFSPTSPAAWA MKDASGGCRRNVPLRCGNTTTTDGFALVQGVKLPDTHNASVDTGITVEECRARCVANC SCLAYAAADIRGGGGGSGCVIWTGGIVDLRYVDQGQGLFLRLAESELDEGRSRKFMLW KTVIAAPISATIIMLVLLLAIWCRRKHKISEGIPHNPATTVPSVDLQKVKAATGNFSQ SHVIGQGGFGIVYKGQLPDGRMIAVKRLHQSTLTKKGKKDFTREVEVMARLRHGNLLR LLAYCSEGSERVLIYDYMSNRSLDLYIFGDSGLRLMLNWRKRLGIIHGIANGIAYLHE GSGECVIHRDLKPPNVLLDDSFRPKIADFGTAKLFTADQPEPSNLTVVVSPGYASPEY AWRGEMTLKCDVYSFGVVLLETLSGQRNGPMYSLLPHAWELWEQGRVMSLLDAMIGLP LSVSGPDHTEMEDELARCVQIGLLCVQDAPEERPAMSAVVAMLTSKSSRVDRPKRPGV HGGRSRPPLRESELLGATDIDDDLT</aaseq>

Gene Sequence

<dnaseqindica>3723..4037#3509..3641#3159..3399#2839..3055#2498..2622#1500..1622#22..1339#tagcgtcgtggtgattaattaatggcgaaggcaacgactggcatctgcctcgttgacgtcatcctcttctcgttcttcctcgttgctcccagagccttcgccgccgccgcggccgttaccgacacgctccgcggcggccggaacatcaccgacggcgagacgctcgtgtcggccgacggcacgttcactctggggttcttctcccccggggtgtcagccaagagatacctcggtatatggttcacggtctcccctgatgccgtttgctgggtggccaaccgagacagccctctcaacgtcacctccggcgtgctggcgatcagcgacgccgggatcctcgtcctgctcgacggctccggcggcggccatgtcgcgtggtcgtcgaactcgccctacgccgcctcggtggaggcgcggctgtctaactccggcaacctggtcgtccgtgacgcaagcggcagcaccaccacgttgtggcagtcgttcgatcacccgtcgaacaccttgttgccgggcatgaagatgggcaagaacctgtggaccggggccgagtgggacctcacgtcgtggcgctcgccggacgacccgtcgccgggggcctaccgccgcgtgctggacaccagcggcataccggacgttgtcctgtggcaagacggcgtcgagaggtacaggtcggggccatggaacggccggtggttcagcggcaacccggaggcggcgacgtacacgacgaacctgatcacgttccaggtgaccgtcagcccgggggagataagctacggctacgtctccaagcctggggcgccattgacgcgctccgtcgtgctcgacaccggcgtggtgaagcggctggtgtgggaggcgacgagccggacatggcagacgtacttccaggggccgagggacgtgtgcgacgcctacgccaagtgcggggcgttcggcctgtgcgacgccaacgcgccgtcgacgtcgttctgcggctgcctcagggggttcagcccgacgtctccggcggcgtgggcgatgaaggacgcctccggcggatgccggcgaaacgtgccgctgcgctgcggcaacacgacgacgacggatgggttcgcgttggtgcagggagtgaagctccccgacacgcacaacgcgtcggtggacacgggcatcacggtggaggagtgcagggcgaggtgcgtggccaattgctcgtgcttggcctacgccgcggcggatatccgaggaggcggcggtggtagcggctgcgtcatttggaccggcggcatcgttgatcttcggtatgtcgaccaagggcagggtctgttcctgaggttggcagagtctgaattaggtatgtgctgaattttatcagagtgatttcagttctgcacgtcatttccaagcacatttcttggcttagctgacacatttagtaaggatcaggttcgatgtaatattaaccatggctatctattgatgattaactctggaaaacttttgagctatgacagatgagggtaggagccggaagtttatgctctggaaaactgttattgctgcaccaatatctgccacgattattatgctcgtactgctacttgctatttggtgcagaaggaaacacaaaatctcaggtaaagtgctattctccaatggcttgtatacgcttcacttttttttttcatcggcaacatttgcttcggtaaactctagttttgtggtttttttttaggatactctaaatctgtggtaaaatttgaccattttttaatacatcttttttcccatgaagagataaaaacttcacaaaagatgattttatccttgagccaccttagaagattaaatctgaacaaattttagctgaatttaaatatattttacaaaattcaaaacttgttcaaaactacaaaaatgagaattgttatattttaaaaatagaaattgaacatatattgtctgagtttaaacaagttttttaaaatgtttttccacaatttggaataagttttatattttgcaaaatatgtttaaattcaaaaaaaagcttgaatttaaatcttgcaaggtggccaagtgtaaacttgagaagattaggaatatacgcaaaacgaggtgggccattagcgtatgattaattgagtattaactattttaaattataaaaatggattaatatgattttttaaagcaactttcttatagaaattttttgtaaaaaacgcactgtttagtagtttggaaagcgtgcgcgtgaaaaacgatgtgttttctcacccaatatcactggaacgaacgcactagttatatctcaccattggaataggatatgttaaaataatagtcagagcatattctgactaacaaccataaaataagagtgtcttgaagcaaatgtctgagcaaattttgccttctagattacgcttacagaaagaacaaatttaaggtaagcgttagacatttcccaggaagttccagacccagactgattctttttatattgcagaaggtatacctcataatcctgctacaacagttccttcagttgatctgcagaaagtgaaggcggccactggaaatttctcacagagccatgtgattggccaaggaggatttggcatagtttacaaggtaacctcctttcctttttctaatttctacatgatagaacatactcgctcggtcatgattcatgaactcttgacactcgtgtgcttccatttttctaatgaaaattccttgtagtgaggttgtcaaagagtcaatgtggatgatttttttttggaggaatgtggatgaaatttatgtattctcagttgcttacaatataaattgtataatctgtagggccagttacctgatgggagaatgattgctgtaaaacggctacaccaatcaaccctcaccaagaaaggcaagaaggatttcacaagagaagtggaggtgatggctaggctcagacacggcaaccttcttcgtctccttgcctactgcagcgaaggcagcgagcgtgtgctgatatacgactacatgtcaaacaggagtttggatctctacatatttggtacttagagaaacgaatatacagaaaaaaaaaaggctgcattcttacagtttatacaattctcgtatggcatttgctaacttgatgtaccttgcactggcaggcgattctggcctccgactcatgctcaactggagaaaaagattgggcatcattcatgggatcgccaatggtattgcgtacctgcacgagggatcaggcgagtgcgtcatccacagggatctgaagcctccgaacgtactgttggacgacagtttcagacccaagattgcagattttggcaccgccaagctattcacagcagaccagccagagccttccaatctcaccgttgtggtttcaccgtcagttacttcacaccctccattctcttgctcatgaacaatcagccaactggtcatgtttcgtagtattactgtgtcactgacatggtcgagttacatttccatgaaggggatacgcatctccggagtacgcatggcgaggggagatgacactaaagtgcgatgtctacagctttggagtcgttcttctcgaaacccttagcggacagaggaatggtcccatgtacagtctccttccacatgtaagcatcaccatatatacaccaaatcaccaaatatacatatacatttggattaattcaccaaatcggctttgtgtgcaggcatgggagctgtgggagcagggcagggtgatgtccctccttgacgcgatgatcggtctccctctctcagtctcagggcctgatcacaccgagatggaagatgaactggcgaggtgcgtgcagatcgggctcctgtgcgtgcaggatgcgccggaggaaaggccggccatgtcggcggtcgtcgcgatgctgaccagcaagagctcacgggtggatcgtcccaagaggccaggggttcacggcggcagaagcaggccaccgttgcgcgagtcggagctgctgggcgccaccgacattgacgacgatctcacgtagtacaactgtacagggttatatatatagtccctccgtctctacgccatttactttactaaacatgttttaccgttcatcttatttaaaagatttaagtaattgtt</dnaseqindica>

External Link(s)

NCBI Gene:Os04g0634000, RefSeq:Os04g0634000