Os04g0641400

From RiceWiki
Revision as of 20:00, 22 July 2012 by 124.16.129.48 (talk)
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Function

Please input function information here.

Expression

Please input expression information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this gene

Please input related labs here.

References

Please input cited references here.

Structured Information

Gene Name

Os04g0641400

Description

RNA-binding region RNP-1 (RNA recognition motif) domain containing protein

Version

NM_001060579.1 GI:115460887 GeneID:4337172

Length

3679 bp

Definition

Oryza sativa Japonica Group Os04g0641400, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 4

Location

Chromosome 4:33032670..33036348

Sequence Coding Region

33032919..33033368,33033519..33033632,33034438..33034513,33034853..33034968

Expression

GEO Profiles:Os04g0641400

Genome Context

<gbrowseImage1> name=NC_008397:33032670..33036348 source=RiceChromosome04 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008397:33032670..33036348 source=RiceChromosome04 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgagtggtacgggatacacagttgaagttactaacctgtcaagcagggcatctgaaagtgatcttcatgagttcttttcattctctggagcgattgagcatatagaacttatcagatcaggagaatatggttctactgcttatgtgacattcaaggaaccctattccttggaaactgcagtattgctcagtggggctactattgtggatcagccagtttgtatagctcgctggggacagcctaatgaaccatacaatttctgggacacaccaaattggtatacagaggaggaaattgaatacaggacctatcaaacatgccagttcaattccactccacaagaagctttgacgattgctcaggatgttgtgaagacaatgctagcaaggggatacgtactcagcaaggatgcactggccagggctagagcctttgatgagtcccatcaggtaacagcgactgccgcagccaaggctgcggagctgagcaagaggattggcctaaccgacagggtcagcggcctaaccgacagggtcagcgccggtgttggtgcaatcagatcggtggatgagacataccacgtatccgagacgaccaagaccgtcgccaccgccacaggaagaacagcagttaaggttgtgaatggcatcatgaccagcagctatttctctgcaggagctatgatgctgtctgatgctctccatagggcagcacaggcagcagctgatttggctgctcatggtagacacaattaa</cdnaseq>

Protein Sequence

<aaseq>MSGTGYTVEVTNLSSRASESDLHEFFSFSGAIEHIELIRSGEYG STAYVTFKEPYSLETAVLLSGATIVDQPVCIARWGQPNEPYNFWDTPNWYTEEEIEYR TYQTCQFNSTPQEALTIAQDVVKTMLARGYVLSKDALARARAFDESHQVTATAAAKAA ELSKRIGLTDRVSGLTDRVSAGVGAIRSVDETYHVSETTKTVATATGRTAVKVVNGIM TSSYFSAGAMMLSDALHRAAQAAADLAAHGRHN</aaseq>

Gene Sequence

<dnaseqindica>2981..3430#2717..2830#1836..1911#1381..1496#gtgcgctggtgcgggtgggtggccttcaaacctagcccccgtgtggttgcagcggagcaggaaggggaagtcgggggaaaaccgagaagaattcaaggaagggggtgatgtttcctcgatctctctgttttctaattcgatttatgccccaatttttggttgcttgtggggagatcgtttgtgttctgttttgattttccgcaaggtttcctcttgctttgcttacttttcgtttgccattagcggattattatgtttcctatgattattgcgctggtctggggtgttttacctgtgtgttcagaatcagtagcattacatttcagttagcatataccatgtgacgattcagagttgcctgacttattacttaggcaaatgattgtggtagttaaatcctcgtattacttaggatggattagttttagttgatattattctggaagctggatgaacatttaactgacaaattgttgctcatggtagataccagcaatttctctggttctaactttattgagtgttactttatttgatcagtcaaccaacaaatctactgtttttcggtttcccctgtttcgagatgagttttacttcgattactgggagttatagtgttcatctttggtacatctcaatatctcaacctggctgtaccttatggctaacactgataacttcgaaggattgcaatgcaaattcctcaataatactagcctacactatacattgctgattggcagtgtttgctgcacatcagtatgtcaactaatgctggtggtatattctctgcactaatctttttttttgcaggggatattctctgcactaatcagctgcaggttacctttgcaatgttttttattagtctaaaagttgtcattgactcattgtactactgaactgctgatgcaatctccctatacttcttccagttacaagtatattagggaaaaagaatttttagctgagcttcaaggttgatggatctatcatttttccattgccactgatcgacacattaacaatgttcaggctctaatcaaaatcagcataaatgatgtaatcatttttgttttgatggtttacacctaaaccatctttataggacaaacagatagaatatttctgtgttaaataaacaaaatgtccaagtttctctaaaagcaaccacttacatataaataatgagttagaaacacttttggtaacctgctcctattatataacctcagtacctaacgatgtaaattaaaggttacatggtccatccttgatagtagtatgatacgcttatacaattttcgaatgacatgtaacctaaccatctgaaggaaatacttatatatatatttttaattcttgatgacttccagaatcatgagtggtacgggatacacagttgaagttactaacctgtcaagcagggcatctgaaagtgatcttcatgagttcttttcattctctggagcgattgagcatatagaacttatcaggttatgttgtttacttgtccattcagaagttaatagttttttcagataatggaaatggtttactgtttacattcctggcctctgcattggaagtaatatttaggtgaccctttacaatatccatgccaagattatcactaaataagtagtcactgagttgtaccatgcttcttgtattctaccttctagatctcactttcatcctgtttaaaagtttgaacattcttcgtctttaactgtaacctgatttagcaatttaagaattcagcttatttggatgtatggatcctctcatcatccatcttatcattttatgacgaatttaacaattttcaacagatcaggagaatatggttctactgcttatgtgacattcaaggaaccctattccttggaaactgcagtattgctcagtgtaagtttttttggtagcagtatctttcaaagcagatgcctggatcaatttttttttcaatgcgtgtctgattcctatcactaattctttcctacctaactataaattctttaattcttccttttgagttctacacttatccatcttaaatctatttacacaaatgatcactgatcacggtcctggactaccatattccgctctcaactatgcggttgaactctggtttcacaatggtgaaatcctggaaatttataactgttaccactaaacaaatagtgaaaacagtacttctattttcagtatcaagtactccctccgtcccctaatataagggattttgacattttacttgcattgtttggcattcgtcttattcaaaaaaatttgaaattatttttttttgtgacttactttattatccaaagtactttaagcacaaatttttcgttttttatatttgcacaatttttttgaataagaagagtggtcaaacaatgcaagcaaaatattaaaatcccttatattaggggacggagggagtatataatatgtccactgttcactattttaggtgtcagttggaaaaaacgattttaggtatcagaggctctttcaatttgatatattccaaattcagtcacttaggaagctaccatatgcccacatactctcttggaactacttagattactaatctgctcttggaactacttagattactaatatgtcatcatatctcttttacattgtcaaacaccaactttctctattgttcatttgatgtcactttgcatcattacagggggctactattgtggatcagccagtttgtatagctcgctggggacagcctaatgaaccatacaatttctgggacacaccaaattggtatacagaggaggaaattgaatacagggtatgctaatccgaatattgccttgtttgaatttttttttgaacgaaccggcgagccaccatccctgtttgaatttgaacagtagcatagtttccaactcttccaaatgccagtagctgacatttgacttgattgctgaaacttaaacagacctatcaaacatgccagttcaattccactccacaagaagctttgacgattgctcaggatgttgtgaagacaatgctagcaaggggatacgtactcagcaaggatgcactggccagggctagagcctttgatgagtcccatcaggtaacagcgactgccgcagccaaggctgcggagctgagcaagaggattggcctaaccgacagggtcagcggcctaaccgacagggtcagcgccggtgttggtgcaatcagatcggtggatgagacataccacgtatccgagacgaccaagaccgtcgccaccgccacaggaagaacagcagttaaggttgtgaatggcatcatgaccagcagctatttctctgcaggagctatgatgctgtctgatgctctccatagggcagcacaggcagcagctgatttggctgctcatggtagacacaattaagtgaaaataaacacccggtacatatattgtcagttattcagacatcaggatgaacacccaaatatggagtacttgacatgatgccgttccaagtatgataataacggtgaaaccggtaacaactgtacctacaaagactgaaggaaatgtgtgcagaacaatgtaaagtatttcaaaccgagtcaagtgatcgtgcagtcatgtttaacagtttctgctcgttttatattcatgctgatagcatccttc</dnaseqindica>

External Link(s)

NCBI Gene:Os04g0641400, RefSeq:Os04g0641400