Os05g0144800
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Contents
Annotated Information
Function
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Expression
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Evolution
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Structured Information
| Gene Name |
Os05g0144800 |
|---|---|
| Description |
Similar to TFIIH basal transcription factor complex helicase subunit (EC 3.6.1.-) (DNA-repair protein complementing XP-D cells) (Xeroderma pigmentosum group D complementing protein) (CXPD) (DNA excision repair protein ERCC-2) |
| Version |
NM_001061162.1 GI:115462054 GeneID:4337788 |
| Length |
5315 bp |
| Definition |
Oryza sativa Japonica Group Os05g0144800, complete gene. |
| Source |
Oryza sativa Japonica Group ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
| Chromosome | |
| Location |
Chromosome 5:2562850..2568164 |
| Sequence Coding Region |
2563143..2563253,2563518..2563626,2564050..2564126,2564238..2564316,2564501..2564590 |
| Expression | |
| Genome Context |
<gbrowseImage1> name=NC_008398:2562850..2568164 source=RiceChromosome05 preset=GeneLocation </gbrowseImage1> |
| Gene Structure |
<gbrowseImage2> name=NC_008398:2562850..2568164 source=RiceChromosome05 preset=GeneLocation </gbrowseImage2> |
| Coding Sequence |
<cdnaseq>atgaagttcgacctggagggcctgacggtgcacttcccgtacgcggcgatctacccggagcagcacgcgtacatgggcgagctgaagcgcgccctcgacgcgcgcggccacgcgctgctcgagatgccgacgggcaccggcaagacgtcggcgctcatctccctcatcacctcctactccctcgccagcccgtcccgcccgctccgcctcatctactgcacccgcaccgtccacgagatggagaagaccctcgccgagctccgcctcctcttcgcccacctccccgccgccgcctcccgctccctcctcgccctcggcctctcctcccgcaagaacctctgcgtccacccccaggcctccgccgccgccgcccgcgactccgtcgacaccgcctgccgccgcctcaccgcgtcctgggtgcgcgacagggccgcctccgacccggactccaccccgctctgcgacttcttcgagtccttcgaccgcgccgccgccgccggtgacctcgcctcctacatgccccccggcgtctacaccctcgccgacctccgcgccctcggccgcgaccgcgggatctgcccctacttcctcgcgaggcagatggtcaagtacgccaatgtcgtggtctacagctaccagtacctgattgatcccaaggtggccagcattgtgtccagggagatgcagaaggagtgcgtcgtcgtcttcgacgaggcgcacaacatcgataatgtctgcattgaggctctcagtgtcagcatccgcaagcagacgctcgaaggtgccgagcgaaacttgcggcgcatctcgcaagagatcgataggttcaaggccactgatgccaataggcttcgtgctgaatacaacaggctggttgatggattggcacagaggggaaacctgccaatatcggatgcttggctcgcgaacccggccttgcctgaggacattctgaaggaggctgtaccaggaaacatcaggagggctgagcattttcttgctgttttgcggaggcttgtcaggttcctagatggacgcctggaaacagagaatgttgagaatgaaatgcctgttgcctttgttgcttcaatccattcccaggctggaattgaccagaaaatgttaaggttttgttatgatcggctacactctctaatgcttaccttggagataaccgatacagatgagttcatgcacatccagacaatttgtgactttgccacattgattggaacttatacacggggcttttctataataatagaaccctatgatgagagaatgcctgatatccgtgatcctgtgattcagctcagttgccatgatgcatcgcttgcaatacagcctgtttttgagcgttttcaaacagtagtcataacttctggtactctcagcccaatagacctctaccctcgccttttgaactttaatcctgttataagcaggagcttcacaatgtctttaacaagggattgcatatgtcccatggtcttgacaagaggaagtgaccagctacctgtcagtacaaagtttgatatgcgtagcgatcctggcgttgtaaggaattatggtcggctcttgctggagatggcttctgctgtgccagatggcatagtttgtttttttgtcagttactcttatatggatggcattgtcaacagctggaatgagatgggtattttgcaggacatcatgcagcataagttggtattcattgaaacaccagatgttgttgagacaacattggctcttgataattacagaaaggcatgtgattgtggaagaggtgctatattcttttccgttgccaggggcaaagtagccgaaggtattgattttgatcgacactatggcagacttgtgatcatgtttggtgttcctttccagtacacactcagcaggatattacttgctaggttggagtacctaagagaaacttttcaaataaaggagggtgacttcctgaccttcgatgctttgaggcaagctgcgcaatgtgttggccgtgtgatccgttctaaagcagattatggaatgatgatatttgctgacaagagatacagtcgccatgataaacggtctaaactgcctgggtggatactgtcacacttacatgatgcgcacctaaatctgagcactgatatggctttgcatatagctcgtgagttcctacggaggatggcgcagccttacgataagacggggagcggcggcaacaagactctcttaaccgaagaggatttgcagaatatggcgcaggacgccatggagatgtga</cdnaseq> |
| Protein Sequence |
<aaseq>MKFDLEGLTVHFPYAAIYPEQHAYMGELKRALDARGHALLEMPT GTGKTSALISLITSYSLASPSRPLRLIYCTRTVHEMEKTLAELRLLFAHLPAAASRSL LALGLSSRKNLCVHPQASAAAARDSVDTACRRLTASWVRDRAASDPDSTPLCDFFESF DRAAAAGDLASYMPPGVYTLADLRALGRDRGICPYFLARQMVKYANVVVYSYQYLIDP KVASIVSREMQKECVVVFDEAHNIDNVCIEALSVSIRKQTLEGAERNLRRISQEIDRF KATDANRLRAEYNRLVDGLAQRGNLPISDAWLANPALPEDILKEAVPGNIRRAEHFLA VLRRLVRFLDGRLETENVENEMPVAFVASIHSQAGIDQKMLRFCYDRLHSLMLTLEIT DTDEFMHIQTICDFATLIGTYTRGFSIIIEPYDERMPDIRDPVIQLSCHDASLAIQPV FERFQTVVITSGTLSPIDLYPRLLNFNPVISRSFTMSLTRDCICPMVLTRGSDQLPVS TKFDMRSDPGVVRNYGRLLLEMASAVPDGIVCFFVSYSYMDGIVNSWNEMGILQDIMQ HKLVFIETPDVVETTLALDNYRKACDCGRGAIFFSVARGKVAEGIDFDRHYGRLVIMF GVPFQYTLSRILLARLEYLRETFQIKEGDFLTFDALRQAAQCVGRVIRSKADYGMMIF ADKRYSRHDKRSKLPGWILSHLHDAHLNLSTDMALHIAREFLRRMAQPYDKTGSGGNK TLLTEEDLQNMAQDAMEM</aaseq> |
| Gene Sequence |
<dnaseqindica>4912..5022#4539..4647#4039..4115#3849..3927#3575..3664#2819..2943#2254..2434#1817..2010#1311..1714#1121..1203#140..963#acgggcacggcattgtaacgaacacctcacgcgcacaccctcccctccccacggcggcggcggcggcggcgcgtgcagccggcgattccgcctctcctccaaactccggcggcccaccggccccgacctcgccgccgcgatgaagttcgacctggagggcctgacggtgcacttcccgtacgcggcgatctacccggagcagcacgcgtacatgggcgagctgaagcgcgccctcgacgcgcgcggccacgcgctgctcgagatgccgacgggcaccggcaagacgtcggcgctcatctccctcatcacctcctactccctcgccagcccgtcccgcccgctccgcctcatctactgcacccgcaccgtccacgagatggagaagaccctcgccgagctccgcctcctcttcgcccacctccccgccgccgcctcccgctccctcctcgccctcggcctctcctcccgcaagaacctctgcgtccacccccaggcctccgccgccgccgcccgcgactccgtcgacaccgcctgccgccgcctcaccgcgtcctgggtgcgcgacagggccgcctccgacccggactccaccccgctctgcgacttcttcgagtccttcgaccgcgccgccgccgccggtgacctcgcctcctacatgccccccggcgtctacaccctcgccgacctccgcgccctcggccgcgaccgcgggatctgcccctacttcctcgcgaggcagatggtcaagtacgccaatgtcgtggtctacagctaccagtacctgattgatcccaaggtggccagcattgtgtccagggagatgcagaaggagtgcgtcgtcgtcttcgacgaggcgcacaacatcgataatgtctgcattgaggctctcagtgtcagcatccgcaagcagacgctcgaaggtgccgagcgaaacttgcggcgcatctcgcaagagatcgataggtacctggtgttgaagaagcttgcagctactaatatgcataaaaaaacatgaattctttgtttccaggattgcttttatgatttccttaagagcatccaactttgtgataaatagttgaagcttgcttgctcactaattgccttatctgggaggaaggttcaaggccactgatgccaataggcttcgtgctgaatacaacaggctggttgatggattggcacagaggggaaacctgccaagtgagtaccattttttctttcactaattctgtgtcttagactgctcattgtggttggtctttctgggtcagttaatagtttacgataaaatatttcttgttatgtagtatcggatgcttggctcgcgaacccggccttgcctgaggacattctgaaggaggctgtaccaggaaacatcaggagggctgagcattttcttgctgttttgcggaggcttgtcaggttcctagatggacgcctggaaacagagaatgttgagaatgaaatgcctgttgcctttgttgcttcaatccattcccaggctggaattgaccagaaaatgttaaggttttgttatgatcggctacactctctaatgcttaccttggagataaccgatacagatgagttcatgcacatccagacaatttgtgactttgccacattgattggaacttatacacggggcttttctataataatagaaccctatgatgagagaatgcctgatatccgtgatcctgtgattcaggtactcattcttctctatatgacaataatctctaatcttaactgtcatcaaaagtcgtcaaagtgcattattgatatcctaatcaatttctatgtgttgcagctcagttgccatgatgcatcgcttgcaatacagcctgtttttgagcgttttcaaacagtagtcataacttctggtactctcagcccaatagacctctaccctcgccttttgaactttaatcctgttataagcaggagcttcacaatgtctttaacaagggattgcatatgtcccatggtcttgacaagaggaaggtatggaccgggccttcaaaatttcatgtggcatatattattttgaaagcaagcaactaatttatccattgcatgttttaaatactagcatagcatctattgaatctttcttcatcctttagagcatcatcgcatgaacttagtttagtttttgtattgggttttggctctcaaaattctagtcttactggtgatattgcaaaatcttgatgtataacttcaaatattccatcacattttcagtgaccagctacctgtcagtacaaagtttgatatgcgtagcgatcctggcgttgtaaggaattatggtcggctcttgctggagatggcttctgctgtgccagatggcatagtttgtttttttgtcagttactcttatatggatggcattgtcaacagctggaatgagatgggtattttgcaggttagtttctttaccagtacattattctggtatcgagcagtctatagaatataaatctagtgcaaaactcttcatggattatgacattgaatctcgttatgtcaccatataaagtctaacaattgcacaaatgcattgtttcagttggaaaaacttgtagtactgctctggaacagtcacttgtagtactatatatggtgtctaagcctctaatgttcttattacatgtgcagtttattgtactgctaaaaagtgcattgtctgagctgatttcacatgattaatgcttttactgttctcatgaatacagcattcttggcaaagccttgataacacgcaatgcattagcacctaatatgaaaatcttatgacttcaatttgcaggacatcatgcagcataagttggtattcattgaaacaccagatgttgttgagacaacattggctcttgataattacagaaaggcatgtgattgtggaagaggtgctatattcttttccgttgccaggttggttcactttatattggttttgtcggaaagcacccttcaaatttagtgtcagtgttcagcttcgcaattgattggattgcttgagactattacagctattttaacatcgacccaagtaggtgataattatgtcaaaggtgatatataattactggttggccaatggtttctttattcctagtatatccgaaacaacgaagacagtattagtcaaaaataggtgtaattatgtgttaaccaaaataaatgaatgtcctagttggtacagcaattcagtaagtaatttcagaaaatgcttcaatcaggcatccaccaatatttcattgatgtgtaaacatgaggaactcatacgttgagtttttaagtttatttcttgcaaaaaaaattatcttgtccctgaatgctcaaataaattgctgccattagctcatcatctggctgatcaataggctacaataagcataacccagtaggcaccacgagctaatttaccatcattacagtatattgtagattggctacttctgttcaagtgttattattataaatgtttaagtggtcttgactcatggctacataatatgatggacatatgactcatagctaactaccactatgctcaatccaggggcaaagtagccgaaggtattgattttgatcgacactatggcagacttgtgatcatgtttggtgttcctttccagtacacactcagcaggtgaggacttattgtctgaacttaagatccatttttttgtgcaacccttgatctctatacctgagcattacttctgtgcctacgaatggttcatcatattataaaacattatctactcaatagcaacatccatggatacttactggcataatgacagcttcttttgtgtctacactgtttgcaggatattacttgctaggttggagtacctaagagaaacttttcaaataaaggagggtgacttcctgaccttcgatgctttggtaataatactacttctgccaggggaaagtagggctggatgatttgtagctttatttttctagagacatccaacaaagttttcttgacattttggattctgttaatgccagaggcaagctgcgcaatgtgttggccgtgtgatccgttctaaagcagattatggaatgatgatatttgctgacaagaggtacttgatcactgccttgacttttaactcagaaaattagaacctcgccaatcatcaagaaagcctcgttatagttagctgcctatggttgacaagaaagctccaattcttgtgctgcgtagattagcaacctgattttcgacctgcatatgctgaacaaataggctcccggtttcttgtattgagcatgtggccttggatatcacatcctactttatgacaaacgacagttacttaaatatatcttgcaaatttgttttgggtattttggtcctgaggtcttctatgtttccatttgattctgtcaaaaaaaaaaaaagcaattctaatttgtcacacgcatcctgtccatttccctgccttactggtgaccaagctttcatactccaggattgttaatatcatggtatttctcacctgcagatacagtcgccatgataaacggtctaaactgcctgggtggatactgtcacacttacatgatgcgcacctaaatctgagcactgatatggctttgcatatagctcgtgaggtatgttccataacatttatttttctttgactggtgctatgtagtttgaattgcttcaagtactgtaacttgtaatcatttaaagagcaagtttatctctaaccgataatgaagctatgcttgcccgtgttattattttccaacacaagcacaatttgcatgataaacattcttgcataacaacctgtgcaagaaattgttcagacttgtcgcattctgtgctgaatatattctaacatctggtattaccatcttgtataacagttcctacggaggatggcgcagccttacgataagacggggagcggcggcaacaagactctcttaaccgaagaggatttgcagaatatggcgcaggacgccatggagatgtgaaaccatgaaagaaattgaaagagagggagggggagagagagttttctgctgtacaatacattcaaaattgaggtagaagtcactaatgtacaaaaaaattttggctactcatgtgaaccagcatgaattcgagctgcacggttcatgctaaattgctaacaaattggtccttccaagcacatgtgatattactctgcatctgatataggtatgtacaccttaaagtccttccggatacttatatctgaatatgatggcggcctctgaatttcagacgtgtcgttacattgcct</dnaseqindica> 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| External Link(s) |
