Os05g0168700

From RiceWiki
Revision as of 20:05, 22 July 2012 by 124.16.129.48 (talk)
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Function

Please input function information here.

Expression

Please input expression information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this gene

Please input related labs here.

References

Please input cited references here.

Structured Information

Gene Name

Os05g0168700

Description

Protein of unknown function DUF250 domain containing protein

Version

NM_001061291.1 GI:115462312 GeneID:4337925

Length

3452 bp

Definition

Oryza sativa Japonica Group Os05g0168700, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 5

Location

Chromosome 5:4097196..4100647

Sequence Coding Region

4097625..4097750,4097862..4098128,4098209..4098370,4098730..4098862,4098936..4099003
,4099348..4099532,4100225..4100348

Expression

GEO Profiles:Os05g0168700

Genome Context

<gbrowseImage1> name=NC_008398:4097196..4100647 source=RiceChromosome05 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008398:4097196..4100647 source=RiceChromosome05 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgggtgtcggcggggagaagttccagctggggacggtgggggcgctgagcctctccgtggtgtcatccgtctccattgtcatctgcaacaaggcgctcatgagctccctcggcttcaactttgccactaccttgacgagttggcatcttcttgtcacattttgctccctccatgtagcattatggatgaagttcttcgagcacaagcctttcgactcgagaactgtcatgggatttggagtgctcaatggcatctccattggcctcctcaacttgagtcttggttttaattctgttggattttaccagatgacaaagctggctatcatcccatgcactgttattttggagactcttttcttcaggaagaagttcagccggagtatccaactgtccctttcagtgctcctctttggtgtcggtgttgcaacagtgactgatctgcaactcaatgctgtgggatccgtattgtccttgctggcaattattacaacctgcatcgcgcaaattatgacaaacactatccagaagaagttcaaggtttcttcaacccaattattataccaatcttgcccctatcaatcactgaccctcttccttattggtccattccttgatggatttttgactaaccaaaatgtatttgcattcgactacacatcccaagttgtgtttttcattgtattatcgtgcttgatatctgtctcagtgaacttcagcactttccttgtgatcggaaagacttctcctgtcacttaccaagtcctgggccatcttaaaacatgcctagtactgacctttggttatgttttgcttcatgacccatttagctggagaaacatactcggcatcctaattgcagtagttggaatggtcttatactcatacttctgcacattggagggccagcaaaaaaacgccgaagtctccccacaacaggcgaaagaaggcgattcggctcctttgatctcagactctctgagcaaagttgagaatggaggtggagtggttgatgatgagcctctcaaggtaccgatgtggagctcaaagtactcaagggcgtga</cdnaseq>

Protein Sequence

<aaseq>MGVGGEKFQLGTVGALSLSVVSSVSIVICNKALMSSLGFNFATT LTSWHLLVTFCSLHVALWMKFFEHKPFDSRTVMGFGVLNGISIGLLNLSLGFNSVGFY QMTKLAIIPCTVILETLFFRKKFSRSIQLSLSVLLFGVGVATVTDLQLNAVGSVLSLL AIITTCIAQIMTNTIQKKFKVSSTQLLYQSCPYQSLTLFLIGPFLDGFLTNQNVFAFD YTSQVVFFIVLSCLISVSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLTFGYVLLHDPF SWRNILGILIAVVGMVLYSYFCTLEGQQKNAEVSPQQAKEGDSAPLISDSLSKVENGG GVVDDEPLKVPMWSSKYSRA</aaseq>

Gene Sequence

<dnaseqindica>2898..3023#2520..2786#2278..2439#1786..1918#1645..1712#1116..1300#300..423#cccttccctcccatcccccgattcgccaccgcgaatcccaccaccacccgcagatctccgcctcggcgccattgcccaccctccacgcccccgccagattcgcccagatccacagccgggtaaggcctcgctcgatttcttgggtttcttgggcttcttgcctctccgatgatcgaaatgggatctcttcccgcgtgcaggtgcatccggcggcgtggctggggcgccctcgatcgggaagctttgatcttcgtaccctttttgcggtgggcgggcggcgggcggcggaggaggaggagatgggtgtcggcggggagaagttccagctggggacggtgggggcgctgagcctctccgtggtgtcatccgtctccattgtcatctgcaacaaggcgctcatgagctccctcggcttcaactttggtgggtgttgggagatctgggctcttttttttcctttgcttccccccaagcttcttgattggtcgcttgtgattcgcgtagatctgtgatgctctgcgaatttcgtaggggttgttttcagcgaggattgcttattgatttatgtgcttagatcaattgttagatttttttttgtagtgtttgatttttgtgaatttggccgtggtatttaatttagagatggggagagcatcattgtagagatagtggtaggataaaatgtttctcgaactcatgcagttctggtgaagcttttgaacaaaaaaaatttgctaagaggagtagtgaatatgaaactttgatggttttgatggtgtggattagattcacttgtttatactagtgcagtgaacaagctttagtagcacatctaccaggttgcttgacgcaggggagtaatatccttgtttgatctggtgctgcaatttgaattatgaactcatgcactgtatgtggaacttattgtcaagcttgacttgtgccttttttgtgcggaacataggttgacttgtgttgattgtagcctcctttttcacctaccattttctgttacttcttttctcaaatgcattgcaatgtattagtgtttgtagaatttacatgaatataaatgacaccaactgtttttccatacatggaattgtattttgcagccactaccttgacgagttggcatcttcttgtcacattttgctccctccatgtagcattatggatgaagttcttcgagcacaagcctttcgactcgagaactgtcatgggatttggagtgctcaatggcatctccattggcctcctcaacttgagtcttggttttaattctgttggattttaccaggtacaaggtttgcgatcttctttacgttgattcttgtaccggccagaatttcctagttaattcactgcagtcctgtgcttattgggtgtctggtacagtagtaaactagtagtgatacttatttttgacccttggtacaatgatagctagaggtacaggtaaagtaaatatcttcttgttgatgtgttgcagttttatctattgctgtttgtacaataaacttattacagaaggcttttattacagcacaacattttattgcaagcatttatttcaattgatgtgccctttcttccacactaatcaatccacctaacttatgccgaaatgtcctttatgtctagatgacaaagctggctatcatcccatgcactgttattttggagactcttttcttcaggaagaagttcaggtttgtgttttatacctttgtgcgcccgtgtgatgatgtcttgagctaacccttgtctggattgacactgtagccggagtatccaactgtccctttcagtgctcctctttggtgtcggtgttgcaacagtgactgatctgcaactcaatgctgtgggatccgtattgtccttgctggcaattattacaacctgcatcgcgcaaattgtatccttcaacttcagcccttattttcctcttcccaaaaaatgaaattttatgcataatcaccctgtagtgagaaagtagaattttcatacacggtcaggcttttattatcatctttggtcagtcacacttgattctggtttgagtattcaagtaggcaatacatcttgtttacatttgcaatgttagataactcgatatttgccaacagtatctcttgcgatgtcgctccctttctaaataaacagaagctactagtgtaactatttttttgttttccttttgatcactattatggatcacaattttgtagtactctattttgttgttggtttctgtcatccttaaccagctattagatgacaaacactatccagaagaagttcaaggtttcttcaacccaattattataccaatcttgcccctatcaatcactgaccctcttccttattggtccattccttgatggatttttgactaaccaaaatgtatttgcattcgactacacatcccaagttgtggtaagcagtgaaacaactttcgaagacttactttgaccttgttttatctgattctgattttgcccttgtttcttatgcagtttttcattgtattatcgtgcttgatatctgtctcagtgaacttcagcactttccttgtgatcggaaagacttctcctgtcacttaccaagtcctgggccatcttaaaacatgcctagtactgacctttggttatgttttgcttcatgacccatttagctggagaaacatactcggcatcctaattgcagtagttggaatggtcttatactcatacttctgcacattggagggccagcaaaaaaacgccgaagtctccccacaacaggtagcttccagtctgaattttattgcttgcaaatggttcaccattagttctggaatcgtttcaattgttcccacatatcttatcagctcttcaaaacgccatatattacaggcgaaagaaggcgattcggctcctttgatctcagactctctgagcaaagttgagaatggaggtggagtggttgatgatgagcctctcaaggtaccgatgtggagctcaaagtactcaagggcgtgaaaataccttccttttagaaggcggcattatacaggattcaatttggtaggcggatagtagggttggaagccaacccagattgtaatgaacattccagttacatttttgggtttatttaacattactatctagtatctactagcagtaaaagggttcttgggaggattttaccttcaagatagcagatctgccttgaaacttagacaacagatattgtatgattgtatctggatatgctccacatctttctcactgtaacttcctatgggaacatagatccacagatagacttcattcttttgtaccaaagatccagagaactagagatctgcaaggttcaagtttgtgactgtaagtttatgtttactttggacccagtgatggagcttttgtatatttaggaccaagtgcaaagaggggttcttttcc</dnaseqindica>

External Link(s)

NCBI Gene:Os05g0168700, RefSeq:Os05g0168700