Os05g0243300

From RiceWiki
Revision as of 10:12, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os05g0243300| Description = Similar to 50S ribosomal protein L13| Version = NM_001061544.1 GI:115462818 GeneID:4338199| Length = 6443 bp| Defin...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Gene Name

Os05g0243300

Description

Similar to 50S ribosomal protein L13

Version

NM_001061544.1 GI:115462818 GeneID:4338199

Length

6443 bp

Definition

Oryza sativa Japonica Group Os05g0243300, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 5

Location

Chromosome 5:8708626..8715068

Sequence Coding Region

8708757..8708978,8710837..8710948,8711031..8711197,8711281..8711352,8714994..8714996

Expression

GEO Profiles:Os05g0243300

Genome Context

<gbrowseImage1> name=NC_008398:8708626..8715068 source=RiceChromosome05 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008398:8708626..8715068 source=RiceChromosome05 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgaaagcacttgcaggtttgagaagaatcaatttagatggattgagatggcgtgtatttgacgcaaagggccaggtccttggacggttggcatcccaaatagctgttgtgcttcagggaaaggataagccaacttatgcaccacatgtggaaaatggagacatgtgcgttgtgcttaatgcaaaagatatcagtgttacaggaagaaaaatgaccgataaaatctactactggcacacagggtatattggccatttgaaggaaagaagactcaaggaccagatggaaaaagacccaactgaagcaattcgcaaagctgtcatgcgcatgcttcctcgcaatagattgcgtgatgacagggatcgtaaactgaggatattttctggaaatgagcacccattccatgatcgccctcttgaaccttttatgatgccacgacgccaagtgcgcgagatgcgtccccgggcaagacgcgcactgttaagggcgcagaagaaagagcaggacagagcagcagcggcatcaaccaaagatgaagaaaatgctaagaatgccaaatccgagatcactgcatag</cdnaseq>

Protein Sequence

<aaseq>MKALAGLRRINLDGLRWRVFDAKGQVLGRLASQIAVVLQGKDKP TYAPHVENGDMCVVLNAKDISVTGRKMTDKIYYWHTGYIGHLKERRLKDQMEKDPTEA IRKAVMRMLPRNRLRDDRDRKLRIFSGNEHPFHDRPLEPFMMPRRQVREMRPRARRAL LRAQKKEQDRAAAASTKDEENAKNAKSEITA</aaseq>

Gene Sequence

<dnaseqindica>6091..6312#4121..4232#3872..4038#3717..3788#73..75#ctctcctctcatcgctcctccaccgtcgccgccgccgccaccgcagcggagcaaccacagcaggcgagcgacatggtaagatcctctcactctccatcctctctacctcgttacggcccgtgctcgcatcggtcgctgcgtgctgtgctgtttcgttcttgattcgctgcctcgcggtttggtttgtgggggttatatgtggtggtagctcagtgggtgattagtagtgcggctgcgaggctatttgcctttgtggtgatggatatgatgctgggttcttgggatacatttcgatccggtagggatctatggcgtcatgtagatttcctgcttgaacgatgatgtattgtgccatttcggtcatcgtgcttcccatttatgatggttgctagcatctcttctctttgatgtagcattttgcagtagttcgtgccatccatcttgattgttttgttcagtagatccatttaggtgggttgccacatcccagtactggtagtacactagttgtcacaaacactatctagttgctacaaccagtacaaatctcatatgcttgtctagttctatcagttatactcctacgcatgagagattgaggtttctggatattggattttagatggttcagtcgtctagttgctgcaatacatttgctatcctaactgactacttgataaaatttcagtgttttgatatgcgtttaggaagttctcaaatttaagtctagttcacatgtttgctagcctgcaagtgctttttgctcagttcaaacaatagcactatcagtaccagtacttcaaatttagtaggttgaagctcaaaaatcttattaatgtaattccaaactaagagacagaaacaataggctagatgtagaacaggattcatattggatagctatctagatatttcaattatagactccattccttttcaaggggaaacaaatgtatacagcatactttgctcagtgcaatatgaacacagataagcagcttgaatgaaataatcagaataacttaagttttgaccattcaatcagcatgccactacagattttgtatgccctatattttttggggtattatgaggaatcattggcaggatgaatacactagcaaaatcccaattcatagcaaaggcatatacatctactattgtataattgtattccatcgtcaatacgccatcttaatccatcagcacgccactgtttattaggtattacaactgtagaatttcacaactcatgaagttagtccacatcaaggactgctgtgaatctctctataccgaacttaactggcctaactggctctaccgtgaacggatgtactacacgtttgtgaaaagccaacagctcgtccactgcccgtggtatcccacccgctacaaatgacctcctgcacgccatgctacaaatgaccacctacatgccatactatctctaggattagactctcatttcatctgctagagcctaaaggcaagacaaatacgcatgtcgctctggtatctgacggtttcaaccagctgcaatatgcacactctcaatcaacagacaaccaaacagaccccatctcggcgatcacccactccggctgctgctacaccaacactgggacaccacctgtgaacaaaagctcacgcccacgagaacctcatgggtgatggctcccctgaaacccaaaacaccacacatccctcacccctcctggtgctttgcggagagcacacacgcacaagctcctattccacggggcaccacgcccacgccgctgccatggatctaggttacgttaggtttcagcgccaaccgaaatgtgagagaacgacaccactcgctctacggagacctcgatgccatcgactggagagtaggtaactgaccttgaggttgccagtgaaggccggcggagccacagccatgtcgagcagcggcggtagactggtggctagagacgagaggggaagaggcggcggtaacggcaggggaaaggagcgatgcatcgtttgaagtagacgaaggtgttgtgtgcgcgagcctcttgcctccactcctagtgcttagtgggcccctcaggcccatctcattatctatgggcctgattttattgggctagttttgtttctgacgactctggagaaatatgataatttaacatttttcaatttactttaattaacagttataagcatgatacgtggaacctatgggccagaaagagtaaattaacacatatcatgcttataagtgctaattaaagtaaattgatatccaaaaaaactgttaaattatcaaatttctctagagtcgtcagaaacgaaactagcccaatctaacggaggcctaacttgggctgaaatcaggcccatagataatgagatgggcctgaggggcccactaagcactaggagcagaggcaagaggctagcgcacacgacgccttcgtttgcttcggacgatgcattgctcctttcccccgccattgccgccgccgccacctcttcccctctcatctccggccaccagtccaccgcgggggatcgacatggctatggcgccgccggccttcactggcaacctcaaggtcaattaactcctctctgatagatggtatcgaggtctccgtagagtgaaccgcatttgtcttcctctcacgtttcgcctggcgttgagacctaatgtaacctggattgacagcggcgacgtgagcgcagttgcccggtggcgtaggaggttgtgctggcgtgctctctccgcgaagcaccggatggtgtgaagggatgtgtgatgttttagggactggtaagccgtcgcccatcaggttctcctcgtggacatgagctctcattcacaggtgggtgttggtgttggtgtagccgcaggggaggtgagtgatcgctgaggcgggggtctgtttgggtgtctgctaattgagagtgttcgtagtgcagctggttgaatccgtcaggtaccagagcgagatgtgtgctgctttgcctttagcagtggatactaacgaaaggagtgattgatcctagatatagcatggccagcgggaggtctgttctagcggtgggataccgcgcttagtggacgagctgttggcttctggcatatgttcacggtagagccagttaggttcagtatagagtgattcccagcagtccttgatgttaactaacttcgtgaatttcatgtgaaattcaagagttgtactttgtaataaacaaaggtgtgctgatgtattaagatcgtgtattgatgatatatatatattttttaaaggaaaggccataaggcccagattagtaggcatatattttgatttgcctttgctatgaattgtgattctgctagtgcattcatcctgccaatgattcctcataataccccccaaaagtattaggcatacataatctgctgtgacatgctgatggaatagtgcacattcaagttcctctgattgtttcattaatgcagcaagcaatttttatataattattggataaaaccatgttctctgtgttcatattgcattgagtgaaggaagctttatatacttttttcaatataaatccatttctacacgcctataattttggtcccttagtttggaattgcattaatacaatttttgaacgtgaatgcactagtctactacatgtgaagcaccagcactgacacttctatcatttgaactgtgcagaaagcacttgcaggtttgagaagaatcaatttagatggattgagatggcgtgtatttgacgcaaagggccaggttaccattcttctgctggttccaatggttaagctaatgttcatgggaaatgttttgaccaagctactttgtttgtgcgataggtccttggacggttggcatcccaaatagctgttgtgcttcagggaaaggataagccaacttatgcaccacatgtggaaaatggagacatgtgcgttgtgcttaatgcaaaagatatcagtgttacaggaagaaaaatgaccgataaaatctactactggcacacagggtttgtatgtttctagctaatactgttgaataccttttggttttattatttacaattgtgtcttatgtgttttttcaaataggtatattggccatttgaaggaaagaagactcaaggaccagatggaaaaagacccaactgaagcaattcgcaaagctgtcatgcgcatgcttcctcgcaatagattgcgtgatgtaagtgaaacttcatttctctttgtttctgcttggaaatatgatgctaaatttatttggtgctatctatgcactgcttagttgtcttaaatgtaacacagcaatactaattactagatgataccccgtgtgttgctacgggatattatggaatatatgtgtatggatcagttatacctcgtactacagcaccgtacacttatattggccaacagacagctggttttttcccctaacaaagcttttatattttttacatttttagtgaactaaagtaaaaatattatgtttggtggataattttagaaagaaaggagaaaccaattcgtagctaaatataagtaaaggagaacaatatcaatataaacttaccagatggagtttagttaaaaaaactgagatcaataagtaggtgagtaagttttggatcggggtaattgaattccagcgcatcactgcaaatggcaattcgtggcccttttgttttgtacttgaccaaatcatttgatgcaattacatcattgtaccatattaaaatgagttaacggtattacggtggataaaatgtaaaaaaaaagggggaatattacggactccaaacttttgaaaagaaaaacctacttaatagggaatgaacaactgaattctcgttttttaagataatgaactgaattctcataagggaaaagcaaatgaaatttgcaacttgaagataaaaaaaatagaggagataacataacctcctcattagagaagagaagcagccaggtagatagaagaagatcaatcacttgagccagctgcgctgcctgtcatcaacataaacaaagaagaatgagaaaagaaaagaaaagaattggctgcttgcgaaagaataacgacaacaggcgatagaactcatggagcgatcctctgattttcagaagacgaattagctatttggagctctcgaacagatgcaccatcaattgatgagaggtgaggatcaaatagctagagaagctctgagttgctgctaatgaatgtaggattcccaacgtatatcaaagacaaactgatcacaggctcttcaaagcatgcgtcggtttcgcttttgcatgcatcacctaatgaagaaggtgaccaggcacgcatgacgtgagtggggaggggactgggctattcaatggtccggggatccaatggtgtatatgtgatatacatattaatctaacggttgatataatgttgataacgtggcgaattgaggagacagctttgggtcttaattttatagaaagaagggatttctgtgcgcatctttacaatggtgcttctttgtcttaattgtagcaacatcagttatgttttcacactagacggtatgtcttctcgttgatgagcaagttataatgctacttttcgttttattcattgtttgatgagatacacgtatattagcaaacacttgtatgactgtatcttttcgtgaactataaggatggctgtgaacttctaggatatggtttttctgcagtgtcttgctgaactaattgatctgcttctatatcttacaattcttctatgtggtggggattttcactagaactgtgtacaatgaatagcaagttcaacataccataaaggcgtaaaatccaatcatctcttttttgttcgtgttccataagaaagttgtatactgatctgtcgtggtgtttcttgttatatagtttaactctattttgtctaagaaatcaagtcttttcttctctggtgtgtggcgaaagatccatattttcctacaattctcgtcttcaaattgttaaagcttcatataatgctgtttttgcttattaagcatgtactgttctgatcacaggacagggatcgtaaactgaggatattttctggaaatgagcacccattccatgatcgccctcttgaaccttttatgatgccacgacgccaagtgcgcgagatgcgtccccgggcaagacgcgcactgttaagggcgcagaagaaagagcaggacagagcagcagcggcatcaaccaaagatgaagaaaatgctaagaatgccaaatccgagatcactgcatagatgcgcattcagattgtgttgtgtgggtggagattgctacaaatctacctgttgatgtttttttaaaggatccatgtatcttttatttctttgacatgtagcctgctggattcagtagacggtagaatcat</dnaseqindica>

External Link(s)

NCBI Gene:Os05g0243300, RefSeq:Os05g0243300