Os05g0269800

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Revision as of 10:13, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os05g0269800| Description = Transposase, IS4 domain containing protein| Version = NM_001061590.2 GI:297604177 GeneID:4338256| Length = 2664 bp| ...")
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Gene Name

Os05g0269800

Description

Transposase, IS4 domain containing protein

Version

NM_001061590.2 GI:297604177 GeneID:4338256

Length

2664 bp

Definition

Oryza sativa Japonica Group Os05g0269800, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 5

Location

Chromosome 5:10872558..10875221

Sequence Coding Region

10872558..10873067,10873154..10873486,10874208..10874443,10874528..10874753,10874841..10875096
,10875193..10875221

Expression

GEO Profiles:Os05g0269800

Genome Context

<gbrowseImage1> name=NC_008398:10872558..10875221 source=RiceChromosome05 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008398:10872558..10875221 source=RiceChromosome05 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggctgaaagggataggataagaattgaggatcgtggtttacttgaagataccatccacatgtgtattgaggaacaagtggctatgtttctgcatacggtgggacataaccttagaaataggttagtccgcactaattatagtaggtctggagaaacagtaagtcgttatttcaacaaagtccttcatgcaattggtgagctacgagatgaacttatcagacccccctcattggacactccaactaaaatagcaggaaatcctagatgggatccttactttaaggattgtattggagctattgatggcacacatattagagcctctgttcgtaagaatgtggagtcctcttttcgtggtaggaagtcccatgccactcaaaatgtaatggcggccgtagattttgatcttcggtttacttatgtcctggctggttgggaggggacagcacatgatgctgtagttttaagagatgctttggaacgtgaaaatggccttcatgtcccacaaggaaaattctatctagttgatgctggatatggagccaaacaaggattcttgcctccttttcgtgctgtccggtaccacttgaaagagtgggggaataatccggttcaaaatgagaaggagttgttcaaccttagacactcatccctccgtataacggttgaacgtgcatttgggtcactaaagaggaggttcaaagttctagatgatgccactccattcttcccatttcgaactcaagaaatggataacaacagtggcaagggaggaagcacccatgcttcatggacctcagctatgtcctctttcatgctttctcacctagctaatgttgttgctggtggcacaaggacctcatctggtttcaaggcagtccatctcaatgcatgtgctagggcggtcaatgaaaggttcaatagtactctcacgggtgagcaaattaagaaccatttgaagacatggcaaagaaagttctcgaagataaataggcttaggaaagtgagtgctgctggttgggatgagaaaaacttcattattactcttgatgatgagcactataatggttatactgaggatcacaaggctgatgcggattattttaacaaacctcttgcacactatggtgagatgcttacaatatttggtagcaccatggctacaggaaagtatgcaaaggactcaagttcagtcctaggaacagaggatgtccaagatgacaatgatgaagaaaatgatggtcctgccactactgatgatcgtgcggaggcatcatctgcaagtaagccaaagaaagcaaaaacacaagagaatgaagatgacgggctgattggtgcattcactagtgttggtgacaagcttgcctctgctatactaaaggtcgccgagccggacaataagcttccagaaggtttatttgacacattgaaaacccttcctggttttgaggaggtccatagattattttactatgctcatttggttgccaaccctcatattgctagagcattcgatggactttcatttgaaaacaagatgcattggtttgctatgttcattagtgaaaagttccctggatcaacatag</cdnaseq>

Protein Sequence

<aaseq>MAERDRIRIEDRGLLEDTIHMCIEEQVAMFLHTVGHNLRNRLVR TNYSRSGETVSRYFNKVLHAIGELRDELIRPPSLDTPTKIAGNPRWDPYFKDCIGAID GTHIRASVRKNVESSFRGRKSHATQNVMAAVDFDLRFTYVLAGWEGTAHDAVVLRDAL ERENGLHVPQGKFYLVDAGYGAKQGFLPPFRAVRYHLKEWGNNPVQNEKELFNLRHSS LRITVERAFGSLKRRFKVLDDATPFFPFRTQEMDNNSGKGGSTHASWTSAMSSFMLSH LANVVAGGTRTSSGFKAVHLNACARAVNERFNSTLTGEQIKNHLKTWQRKFSKINRLR KVSAAGWDEKNFIITLDDEHYNGYTEDHKADADYFNKPLAHYGEMLTIFGSTMATGKY AKDSSSVLGTEDVQDDNDEENDGPATTDDRAEASSASKPKKAKTQENEDDGLIGAFTS VGDKLASAILKVAEPDNKLPEGLFDTLKTLPGFEEVHRLFYYAHLVANPHIARAFDGL SFENKMHWFAMFISEKFPGST</aaseq>

Gene Sequence

<dnaseqindica>2155..2664#1736..2068#779..1014#469..694#126..381#1..29#atggctgaaagggataggataagaattgagtacctagaaacgaaaatttggttcaatgatacaacttgtattgacatgcttagacttagaaaaggaagtttttttcgtttttgtaagctatttagggatcgtggtttacttgaagataccatccacatgtgtattgaggaacaagtggctatgtttctgcatacggtgggacataaccttagaaataggttagtccgcactaattatagtaggtctggagaaacagtaagtcgttatttcaacaaagtccttcatgcaattggtgagctacgagatgaacttatcagacccccctcattggacactccaactaaaatagcaggaaatcctagatgggatccttactttaaggtgtgagattcattcctatctcattttatatttatgtgaacattgatgtattgtccctaatttttaatgttgttgaacacaaaataggattgtattggagctattgatggcacacatattagagcctctgttcgtaagaatgtggagtcctcttttcgtggtaggaagtcccatgccactcaaaatgtaatggcggccgtagattttgatcttcggtttacttatgtcctggctggttgggaggggacagcacatgatgctgtagttttaagagatgctttggaacgtgaaaatggccttcatgtcccacaaggtaatagattactatagtttatcaaattctccatgacaaatgttgatatttaggaatgtgaccaacttatcgatcatatgataggaaaattctatctagttgatgctggatatggagccaaacaaggattcttgcctccttttcgtgctgtccggtaccacttgaaagagtgggggaataatccggttcaaaatgagaaggagttgttcaaccttagacactcatccctccgtataacggttgaacgtgcatttgggtcactaaagaggaggttcaaagttctagatgatgccactccattcttcccatttcgaactcaagtagatattgttgtagcttgtgtattattcataactgggtcataaatgacggaattgatgagcttgtagctccgtctgattggtcaagtgaggacattgatgaatcgtcaacttggcaagcgaatgaccatgcattgatggttcagttcaggcagggtttagctgatcagatgtgggctgaccgtaataaccatcatggagtgtaatatgtagctatgcaacttgtatttctaccttatttgctacatttcatttgtattatgaacttctttatttatttatttcgtgtggacagcttgttgtagtccatttgccaaatctcagttgtatggataaatgtattgttgtatgctgaatttctggtttgatgaattgatgaatgttgaatttcttggttaatatgttgctggatgctaatattctaggttgatatgttggtgaaaggtaattttttgggttgatatattgctgaatgctcatattcccggttgatatgttgtgaatgctaattttttgggttgatatgttgctgaatggtcattttctgggttgatatgttggtgaatggtaattttttgggttgatatgttgctgaatggtcatttttttattagatatattgctgaatagttattttctgagttcatatattgttgcatgcataatttattgatatatatattactgaatggacatttttgtttcattttatgataggtaggaaatggataacaacagtggcaagggaggaagcacccatgcttcatggacctcagctatgtcctctttcatgctttctcacctagctaatgttgttgctggtggcacaaggacctcatctggtttcaaggcagtccatctcaatgcatgtgctagggcggtcaatgaaaggttcaatagtactctcacgggtgagcaaattaagaaccatttgaagacatggcaaagaaagttctcgaagataaataggcttaggaaagtgagtgctgctggttgggatgagaaaaacttcattattactcttgatgatgagcactataatggttatactgaggtatatgtcttattttctgggttctttgctttatttttataactttttattgcatttgcttatacattaacttttgtttcatgaaggatcacaaggctgatgcggattattttaacaaacctcttgcacactatggtgagatgcttacaatatttggtagcaccatggctacaggaaagtatgcaaaggactcaagttcagtcctaggaacagaggatgtccaagatgacaatgatgaagaaaatgatggtcctgccactactgatgatcgtgcggaggcatcatctgcaagtaagccaaagaaagcaaaaacacaagagaatgaagatgacgggctgattggtgcattcactagtgttggtgacaagcttgcctctgctatactaaaggtcgccgagccggacaataagcttccagaaggtttatttgacacattgaaaacccttcctggttttgaggaggtccatagattattttactatgctcatttggttgccaaccctcatattgctagagcattcgatggactttcatttgaaaacaagatgcattggtttgctatgttcattagtgaaaagttccctggatcaacatag</dnaseqindica>

External Link(s)

NCBI Gene:Os05g0269800, RefSeq:Os05g0269800