Os05g0419200

From RiceWiki
Revision as of 20:10, 22 July 2012 by 124.16.129.48 (talk)
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Function

Please input function information here.

Expression

Please input expression information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this gene

Please input related labs here.

References

Please input cited references here.

Structured Information

Gene Name

Os05g0419200

Description

Protein of unknown function DUF647 family protein

Version

NM_001062106.1 GI:115463942 GeneID:4338817

Length

4783 bp

Definition

Oryza sativa Japonica Group Os05g0419200, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 5

Location

Chromosome 5:20555212..20559994

Sequence Coding Region

20555759..20555827,20555964..20556149,20556247..20556348,20556456..20556520,20556607..20556687
,20557039..20557111,20557203..20557304,20557493..20557612,20557746..20557856
,20557945..20558016,20558284..20558397,20558479..20558577,20559528..20559581

Expression

GEO Profiles:Os05g0419200

Genome Context

<gbrowseImage1> name=NC_008398:20555212..20559994 source=RiceChromosome05 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008398:20555212..20559994 source=RiceChromosome05 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgggtgtcaccttcaaggccgtgccgctccagtcgccgctgccgcccgtcgaggaaataatgtccttcattaggtcatatgttgtacctgaaggctttccggatagtgtcactccttcatatgtcccatacatgacatggagagcattgaagcatttctttggtggagcaatgggtgtattcacgacaagaaccttgctaaactctgttggagttgcccaaagtagggcaacatctggagctgtggctatcaactggatactcaaggatggagctggccgagttggaaaaatgctttttgcccgccaagggaagaaatttgactacgacctaaagcagcttcgcttttctggcgatctcttgatggagttaggagctgggatagagttagctacggcagctttccctcaacttttcctacctatggcttgcatcgcaaatgttgttaagaatgttgctgctgttacatcaacctcgacccgtacaccaatctacaaggcatatgcaaaaggagaaaatattggagatgtcactgccaaaggagaaagtgttgggaacattgctgatctgttgggaactggtttgagcattttaatttctaagaggaatccatcattggtgacttcatttgccttcttgtcttgtggctatctccttagttcataccatgaggtgagatctgttgtgctgaacactctaaacacggcaagatttactgtggcagttgattccttcattaagagcggacatgttccctcattgaaggaaggaaactcacaggagactatatttaatccaccatggcggcatcagccagttgcaataggatcaagatttggagaggcatttcaggaacctgcttcttttgttgccataaggcctttgtttgaggatgagaggtacattgttacatataacccaacaaaggacaaggtatatgctttgctcaaggaccaagcaaagccagatgatattctcaaagccgctttccatgcacatgtattactacattttattaatgcatcacatgctaacttgaatgcacggaagcggatgaactccaatcggtcataccaaaatgcaaacccactgaacatggactttataccacacattgctgaatcttgcaagattgtcacttcatcatatggagttttcaagaagaaagcgagggaacagggatggataatgtcagaatcattgcttaaccctggacgagctcggttgtgtggaatagtacctcaatga</cdnaseq>

Protein Sequence

<aaseq>MGVTFKAVPLQSPLPPVEEIMSFIRSYVVPEGFPDSVTPSYVPY MTWRALKHFFGGAMGVFTTRTLLNSVGVAQSRATSGAVAINWILKDGAGRVGKMLFAR QGKKFDYDLKQLRFSGDLLMELGAGIELATAAFPQLFLPMACIANVVKNVAAVTSTST RTPIYKAYAKGENIGDVTAKGESVGNIADLLGTGLSILISKRNPSLVTSFAFLSCGYL LSSYHEVRSVVLNTLNTARFTVAVDSFIKSGHVPSLKEGNSQETIFNPPWRHQPVAIG SRFGEAFQEPASFVAIRPLFEDERYIVTYNPTKDKVYALLKDQAKPDDILKAAFHAHV LLHFINASHANLNARKRMNSNRSYQNANPLNMDFIPHIAESCKIVTSSYGVFKKKARE QGWIMSESLLNPGRARLCGIVPQ</aaseq>

Gene Sequence

<dnaseqindica>4168..4236#3846..4031#3647..3748#3475..3539#3308..3388#2884..2956#2691..2792#2383..2502#2139..2249#1979..2050#1598..1711#1418..1516#414..467#gagtgcctcgctgtttcgccgcacccatcgaaatctcacccgctctctctctctcgcgcgcgcgccgcccacccaccgccgcaccggagatggcgccggcgatggggatgaagcggccgccggcggcggcggcggcgacggccacgcagaccgtcacgcttcctgcgccggacgcgcgggcggcggtgcgggacgcggtgcgcgtcgccgtgcgggaggccgagccgccgcaggccccggcgctgccgccgagggcgcccgcgccggcggtcgcggtggacggggtgctgtgcctggaggaggtggacgggaggaagtggagctacgtggtggaggggggcgcgtcccccgggaaggccgggagggtcagcgggagcgggagggggagggggaggggtggggccgcgtcgccgatgggtgtcaccttcaaggccgtgccgctccagtcgccgctgccgcccgtcgaggtgagggcggggtgaggcccgtagggatctatggggattggtggcattcgtggtgttttttggtgttgggatttcgattccatggttgcgacccacccgtagggagatctgatttggagtgaaatgatgcgttctttcgtcctttttttttatggctatgttgttgtttcggcgattggttcgttcctcggtgataaattgaatgtttcgtgggcggtaacatctcctgatttgtagttagtttggtttgatgggatgcggaaaaagcatggtttaagcggattttctctcgttaacagttgtagtgtttgatgggggtgagatttgcagctctgttggtcctgactcctgagtgcaaaattggatccagaattgttggctctgacccttcaatgcaaaattggatccagaattgtaggctgtggtgttgatttgttaacaaacaacccgggaattaaaagttatgccgtttgcttttgcctgtttttggctgtgtggaggcaattagtgaaattcagggggatgttttcatgtattttttcccaggttcacaagctgttcacccacgatttaatttttttttcagttcagcgattaaaattcttatcatgggtctgcaggtttaatttgtctcagtttgggaactgcaggtgttgtagttttgcgctactccatgtttgatttatggctattagttgaggtcctttgctgttgaagctaagttgcaatttttttagaaaagtgatgcttgtgactctttagagctacttgttcgttggatggttcttaatagcacttgtttcttttgtttacattctcttggtgccaactgttatgttcttcccctagtttgttctactaaaatattaggtgcatctgctatgatcttctggaatgacatggcaatgagtgatgaactacgaaatgatttttaaacttttctgttgcaggaaataatgtccttcattaggtcatatgttgtacctgaaggctttccggatagtgtcactccttcatatgtcccatacatgacatggagagcattgaaggtgtattttctggacatgacttggattattatcactgttgactgtattatcttgctaaatccctactatttctctttttagcatttctttggtggagcaatgggtgtattcacgacaagaaccttgctaaactctgttggagttgcccaaagtagggcaacatctggagctgtggctatcaactggatactcaaggtaaaaatggtttttggctagaacaacatagagaataagaatggcctttcttcaacctgcctagcttgctatctagcttgactaatagttgatgtggcactaaacattatcagtacccactgactagatatcaccctgctacctgcctagcgcgtagtgccttagtgataccagtgacctactcagtatgatttagtttctaagtgctgatgtgttcatattaaccttttgtgattgtgctattctctgatagtttcattcctacaggatggagctggccgagttggaaaaatgctttttgcccgccaagggaagaaatttgactacgacctaaagcaggtgcaatatttggaatccatgttttgcaattattttgagctttattttgctctatgcaaaaaactgatcgaaaacactttcacttcagcttcgcttttctggcgatctcttgatggagttaggagctgggatagagttagctacggcagctttccctcaacttttcctacctatggcttgcatcgcaaatgttgttaaggtttgacctagcggtttactgtgacgagtcctaacattaatatggcttgtttgataaagttactgtaatgaaccctttttgtacctgcaaatgtactgaagattgttctacttgatgaaattgttacattcagaatgttgctgctgttacatcaacctcgacccgtacaccaatctacaaggcatatgcaaaaggagaaaatattggagatgtcactgccaaaggagaaagtgttgggaacattgctgatctggtaatcattcatcttttgcattttgtttcttgttggtctggttaccatacatgtagcttatatattctgctggcatcatttatgttaatagtatgctggctactaaaatttgtcttattcagtactgcacttatatgaaaatttgcattcaatagttcactgatatttctgtctttttatgtgtgaagttgggaactggtttgagcattttaatttctaagaggaatccatcattggtgacttcatttgccttcttgtcttgtggctatctccttagttcataccatgaggtttgcttttgaactttcttgatgctcttataattaaatcattctgataaaagttattggttaaccaatcaaatattatatgtattctcaggtgagatctgttgtgctgaacactctaaacacggcaagatttactgtggcagttgattccttcattaagagcggtatgcaactttgacttctagagtcattcagactttgtaatttgcaataggagaaaagtttgtagttgtgtatactgctgcaccttgaaatacaatgtgaagcatcatccttaagaagttcagatggcgcaactaaatgttctggatgccacagatagatttaagaatgaatggcagacatagttgaagacatttatcaatattcaatctgcacatattgtttgaataaaatgtggaatgtggaattgcttgagcaacatatcgcaaagaactgtattcattttaaaagaagtccatgaaaagttgcagtattcagtctaatatttggattctccatatctattgatgcaggacatgttccctcattgaaggaaggaaactcacaggagactatatttaatccaccatggcggcatcagccagttgcaataggtttgcatctataattaaagatttttatgtattttttcattcatgcagattttagagcctttttataatcaattttgatcttataggatcaagatttggagaggcatttcaggaacctgcttcttttgttgccataaggcctttgtttgaggtactatctcgatgatgttattagtatttgtccttagactgttcttttccttcattagcacaatagagcattggcatgtgtgaagttgtgatatattttaattgtaggatgagaggtacattgttacatataacccaacaaaggacaaggtatatgctttgctcaaggaccaagcaaagccagatgatattctcaaagccgctttccatgtaagtattgataacaaggttaacaactttggcaatgccatactggtcaaatttgtttgcattatatcatcctaatcaaatgtgttttggtttacaggcacatgtattactacattttattaatgcatcacatgctaacttgaatgcacggaagcggatgaactccaatcggtcataccaaaatgcaaacccactgaacatggactttataccacacattgctgaatcttgcaagattgtcacttcatcatatggagttttcaagaagaaagcgagggaacaggtgaaaccgcaccacctttatcatttacattttgtacctggtttgggctgaactactagtgaataacaattccgacaaaaacatggcatgattctcgttgtatggcataactaacgactcattttctgattcgcagggatggataatgtcagaatcattgcttaaccctggacgagctcggttgtgtggaatagtacctcaatgacccaataatattcgtttgttatagttgaatggatggtacaattttttttcatacatcgaattcgggccctatgtgagtcagcgaacttctttaactaaatcaaccatatcgaagtgaagtacctggcatgcaccgcgcgagacaggatggatgggtacttcaactttggttagtgctctcttgatgtgaaactatgaacattgttaccgaaccgttaagcatatttttcttactcgttttatttatacctgttctgcaggagcgatgtgcaacatcatggggtatgctgactcatggaaagacggggaaggaaggagaaactaaccaaaaaaaatactggactaacaagcttcttgtatatctatctcactatctgtatttagtactctgtataatgagacgggtatccgccatatagtcgtcggtgtatgtattgaccgacctagtttttgtttcgactctactttcattgtttcggctaacttcgcgaatctgttggtgtttgtaaatgccagtttttccataaagaagagctctgtttgtttcc</dnaseqindica>

External Link(s)

NCBI Gene:Os05g0419200, RefSeq:Os05g0419200