Os05g0279400

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Revision as of 10:14, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os05g0279400| Description = Zinc finger, RING-type domain containing protein| Version = NM_001061619.1 GI:115462968 GeneID:4338285| Length = 581...")
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Gene Name

Os05g0279400

Description

Zinc finger, RING-type domain containing protein

Version

NM_001061619.1 GI:115462968 GeneID:4338285

Length

5819 bp

Definition

Oryza sativa Japonica Group Os05g0279400, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 5

Location

Chromosome 5:11671617..11677435

Sequence Coding Region

11671825..11671992,11672796..11673104,11674389..11674597,11674684..11674732,11674848..11674935
,11675032..11675096,11675222..11676895

Expression

GEO Profiles:Os05g0279400

Genome Context

<gbrowseImage1> name=NC_008398:11671617..11677435 source=RiceChromosome05 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008398:11671617..11677435 source=RiceChromosome05 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggacgacagctgcgcggtgtgcgcggacgcgctggagtgggtggcctacggggcctgcggccaccgcgaggtttgctcgacctgcgtcgttcgcctccgcttcgtgatgggcgacaagcactgctgcatctgcaagaccgagtgctcctccgtattcgtcaccaaggctatgggcgattacacaaaagtgataaatgatttcaatattttcccccctgtggcaactgagggaaaggtgggggagtactggtaccatgaggatagccaggcattttttgacgatgctgagcactacaagatgatacgagcaatgtgtcggctttcttgtagtgtgtgtgacaaagctgaagatcaggctggccaggcagcacaagtaaggcgcaaaagcaagttcaggagcattgaacagctgaagggacatttgttccatcaacataggttatacatgtgcagtctttgcttggaggggagaaaggtgttcatttgtgaacagaagctttatacaaggacacagttaaatcagcatgtaaaaactggtgactctgaggtggatggctctgaggttgagcgcagtggttttgcaggacatcctatgtgcgagttctgcagaagttcattttatggagataacgagctttacacacatatgtcccgagaacactattcatgtcacatatgtcaaaggcaacatcctgggcagtatgattatttccggaattatgatgacttggagttgcatttccgtaaagatcatttcctctgtgaagatgaagcatgtttggcgaagaagtttgtagtcttccagagcgaagcagagctcaagagacataatgctatggagcatggtgggcggatgtctcgtgctcagaggaatgccgcacttcagataccaaccagctttatatatcgaagaaacgagcaagatgaaaggcgtggtagaggtaggggacggaattctcaccgtgatggatctgaccgggataccccctctatgcaaaatggcagtgcaattataggcaacggttttccaagtcgagttgataatgttacagggtctgtgagtgtcagttctagttctgggcgaggagaatctggccaaagctcaggcaatggacgtgtgtttgaacacttgtcctttcctcctcttcaagaccaggatattcctgatgcaaggatggactctgctcctgatgaaacctcattcccttccctctcagagcagcaaaccagatatgctcatgctcttagtcagagttcccttgctgccaagcttggggatgagttattattccctccactacctgggtcaagtagcaacaggggttctacttcaactcaacaggggctacaaagtctagcgaagaacacacttgcatcaaggcttcagcagcgtagcaagggcagtgtgaaagtacttcattctgcccggcctcgcccatctgaaaatcctgaatcagtccctcctgtttctagttccccacagatgtggcctacacctgatcaggggctgcttcattctagttcttcccagcttcgaattgtaagagaaaatgggattatgtcatctgccgactcggcatggaatcctggaggtggagcttcaaacaggatgaagcactctgtttctactcctaatcttatgtctggtgggtcctctgttcaggcactaagtacatctaacggtggcaataaaaaacaacagccaccacaaagcagccaaacattgcctgctgctgatgatgttcgtgctgccaataagaccctggttgaaagaatgcgcagtgctttaggcatggatgaagataggtactctgcatttaaagaaatcgctggtgaataccgtcaaggcatcattggtacttcagaatatctttcatatgttgagcaatttggtctgtcacaccttgtgcctgaaatggctaggctgttacctgatcctcagaagcagaaagaacttgctgatgcctatcacaccaatatacgcttcagaagcctccaagagaacagtgatggtttaaccattacctcaaaggagggtggccgcaagaaaaagggcaagggaaaatctcatgatgttacagaaactagtgctgctcctgctaaggatatgaaggattcactagcagatagcttcctggacactgtaaggaagcttcagttaaacaagactcaggaaggagaggctgaggtgctgtcaagggatgggtatcgatcttccaagggaaaggcccaactaataactggaggttcatcatctagtacaccatgtctagatggtgatcatggtgccatttcaatggcttcttgtgccaaagatgatgtaggcaagggaggaggtagcagcaacagcaacatcaacaaacaatcaaagaagacatcaaagtttctcagagcccgattaggtgataactccttagctacacttgatttgagtcgtcctaccatgagccctgaacgaccagaaagggaatcgcaaggcccacaggtagggttgcctatgcgaggtgtttggaaaaatggagggggccagaagctctttacgggcaatggaaggaagtaa</cdnaseq>

Protein Sequence

<aaseq>MDDSCAVCADALEWVAYGACGHREVCSTCVVRLRFVMGDKHCCI CKTECSSVFVTKAMGDYTKVINDFNIFPPVATEGKVGEYWYHEDSQAFFDDAEHYKMI RAMCRLSCSVCDKAEDQAGQAAQVRRKSKFRSIEQLKGHLFHQHRLYMCSLCLEGRKV FICEQKLYTRTQLNQHVKTGDSEVDGSEVERSGFAGHPMCEFCRSSFYGDNELYTHMS REHYSCHICQRQHPGQYDYFRNYDDLELHFRKDHFLCEDEACLAKKFVVFQSEAELKR HNAMEHGGRMSRAQRNAALQIPTSFIYRRNEQDERRGRGRGRNSHRDGSDRDTPSMQN GSAIIGNGFPSRVDNVTGSVSVSSSSGRGESGQSSGNGRVFEHLSFPPLQDQDIPDAR MDSAPDETSFPSLSEQQTRYAHALSQSSLAAKLGDELLFPPLPGSSSNRGSTSTQQGL QSLAKNTLASRLQQRSKGSVKVLHSARPRPSENPESVPPVSSSPQMWPTPDQGLLHSS SSQLRIVRENGIMSSADSAWNPGGGASNRMKHSVSTPNLMSGGSSVQALSTSNGGNKK QQPPQSSQTLPAADDVRAANKTLVERMRSALGMDEDRYSAFKEIAGEYRQGIIGTSEY LSYVEQFGLSHLVPEMARLLPDPQKQKELADAYHTNIRFRSLQENSDGLTITSKEGGR KKKGKGKSHDVTETSAAPAKDMKDSLADSFLDTVRKLQLNKTQEGEAEVLSRDGYRSS KGKAQLITGGSSSSTPCLDGDHGAISMASCAKDDVGKGGGSSNSNINKQSKKTSKFLR ARLGDNSLATLDLSRPTMSPERPERESQGPQVGLPMRGVWKNGGGQKLFTGNGRK</aaseq>

Gene Sequence

<dnaseqindica>209..376#1180..1488#2773..2981#3068..3116#3232..3319#3416..3480#3606..5279#gccgtgcgggccgccaacacaaggacgcgacgacaagggtggggggataagcggagagagagagaaaaaggaaaaactgtctcgtcgtctcgaaccttctcgcctccctcaccgccctaacccttcctcttctcctccgccgccgccaccgccgctccgccccctccgtcccttcgccgctaccgatctcccccgcccgcccgcggagatggacgacagctgcgcggtgtgcgcggacgcgctggagtgggtggcctacggggcctgcggccaccgcgaggtttgctcgacctgcgtcgttcgcctccgcttcgtgatgggcgacaagcactgctgcatctgcaagaccgagtgctcctccgtattcgtcaccaaggttcgtatcgtcgctagggtttcctccgccccggccaggttgtttgatctgtgccgtcgggagcgtcggtggatcttgggtcgtcggctggttagggtttcgatgggcttgaaatatggggctcttgctcgtgaaattgtatggttttatggtggtgaaaatttgttcgatttcacgaactaatgttgttggctaattatgtgaacttagcttattgtatgaattggttcctagggagttgggatttcagctaaaaacctaatgctactgagaagaagacaatgagtttaatcagcacaaatttatttaatcagaaatttgttttgtcaagcgattaggggtcggcaatttgagttcaggtgttaataatgggatgccatggttcctgtacttccttttttgatacatggcattgcaagctactattattcttacacttagtgtgaccgattatgatatttaggcttatgactgagctagaaatttttttatcgagctttattaatgtgagtttgttaggcttccctatctgagttatcagcattttttctgttgtgttttattagtgcaaagacaagcagaaaaaaaatgtgcaagtgttcctttaatgttttatgttttcactatgaatttcctttgctatttaatcgatggctgattgtgtaactcattggttactttctctgtttttttttataataaaattagactgaagtcattgtatagctaaaggattgcatgtgcagtcttcatatgaatttaaaattttaattatggctcattcatctttgatcattcaacaggctatgggcgattacacaaaagtgataaatgatttcaatattttcccccctgtggcaactgagggaaaggtgggggagtactggtaccatgaggatagccaggcattttttgacgatgctgagcactacaagatgatacgagcaatgtgtcggctttcttgtagtgtgtgtgacaaagctgaagatcaggctggccaggcagcacaagtaaggcgcaaaagcaagttcaggagcattgaacagctgaagggacatttgttccatcaacataggttatacatgtgcagtctttgcttggaggggagaaaggtgacattcttgacaacaatgtgctcttttctccttaaatagtcactgttggtttgattgtttcctgcattttaaaaataaaatcagcatgaagtcttaagagactgtcatggggaatgatctagctacttatgtggacatgctttgctcattgtgtgagcctagtaggtactacctctgtccctaaataagtgcacttctagcacccaaattttataccaaaataagtgcacccctagagtaagcttatcccatccatcacttcccattcaattttctacctattttacccccaactaccctcccacttctaaccatgactcatttaattgggggcttatatgtcatttatcttcctagtgatttgtctgccatgtgctaaatgcacttatttaggatgatggtagtagtaattaagtaatcttgactattgttgatatcactgcttttactatgtatgccatatgtaaatatgtaaaagatcggagaaatctataagtacttggtgaaagatcttttgctttccataaagtgttgcttttgctttgtgtgatgagttgactttttttggggggaaatggaattgaaattcttgcaaactaaagaaattgaagcagagatactttctcatgaggatggtaacatttagagtagttagtctatgtttaattgtggctacatgctacatagcccagtgccagttccccatcgtcacagttactgcatattctcattgctttaaaatgtaatgtgcttatggaattgtatgcatgacctcatagactggtggccagcttttgtcaactcggctagtccaccagggtgctgaccgatctcagtggtgtctaggttgtgctcggaactgatttcttgaatactggtccaatgcaaaccattccacttgagcattttttatctgtatgaataatttggtttactaacctagaagtatttaattaaaaccaatttatatcagttatgttggatacagtattaatgtagtaatataatattggggacacagaccatgctatttgaagtgaaagtaactgaagctgatgtctgtatgtttgaagctgagattgattttgtaatgtgcattttcaacccactgggaaggtagaaatgaaaagctttacgttaacaccctccaactataataaattatctattttgcccacacgcatattgttatcttgataacataggggctattttactacacttttaactaactgagacttgatggtagtttgtttgactagttgatgtgttgttggccaggtgttcatttgtgaacagaagctttatacaaggacacagttaaatcagcatgtaaaaactggtgactctgaggtggatggctctgaggttgagcgcagtggttttgcaggacatcctatgtgcgagttctgcagaagttcattttatggagataacgagctttacacacatatgtcccgagaacactattcatgtcacatatgtcaaaggtatcatcatgtacctcattacccttagctaaattgtactaacacgctatgtgatattctaacttacgattggtcattggttgcaggcaacatcctgggcagtatgattatttccggaattatgatgacttggaggtttgttggcacaaatggatatgttgcctttgttcgaagatgttttttttttcatttactctgttctgcaagcttttggtagcatcctaatgtatgttttattaattcaattcagttgcatttccgtaaagatcatttcctctgtgaagatgaagcatgtttggcgaagaagtttgtagtcttccagagcgaagcagagctcaaggcaagtatatttcagttagttgtattagctgctctgttactgcattagatgctaggttacttattttcatatttcttggcttgtttatttctccagagacataatgctatggagcatggtgggcggatgtctcgtgctcagaggaatgccgcacttcaggtatgtattagtcttagaatttctcattcttgtgcctaaggtttcccttttatcctgctcacctgtcttgtttgtactaatactggaattttctttgagctaatttttctgtttggctttgtcagataccaaccagctttatatatcgaagaaacgagcaagatgaaaggcgtggtagaggtaggggacggaattctcaccgtgatggatctgaccgggataccccctctatgcaaaatggcagtgcaattataggcaacggttttccaagtcgagttgataatgttacagggtctgtgagtgtcagttctagttctgggcgaggagaatctggccaaagctcaggcaatggacgtgtgtttgaacacttgtcctttcctcctcttcaagaccaggatattcctgatgcaaggatggactctgctcctgatgaaacctcattcccttccctctcagagcagcaaaccagatatgctcatgctcttagtcagagttcccttgctgccaagcttggggatgagttattattccctccactacctgggtcaagtagcaacaggggttctacttcaactcaacaggggctacaaagtctagcgaagaacacacttgcatcaaggcttcagcagcgtagcaagggcagtgtgaaagtacttcattctgcccggcctcgcccatctgaaaatcctgaatcagtccctcctgtttctagttccccacagatgtggcctacacctgatcaggggctgcttcattctagttcttcccagcttcgaattgtaagagaaaatgggattatgtcatctgccgactcggcatggaatcctggaggtggagcttcaaacaggatgaagcactctgtttctactcctaatcttatgtctggtgggtcctctgttcaggcactaagtacatctaacggtggcaataaaaaacaacagccaccacaaagcagccaaacattgcctgctgctgatgatgttcgtgctgccaataagaccctggttgaaagaatgcgcagtgctttaggcatggatgaagataggtactctgcatttaaagaaatcgctggtgaataccgtcaaggcatcattggtacttcagaatatctttcatatgttgagcaatttggtctgtcacaccttgtgcctgaaatggctaggctgttacctgatcctcagaagcagaaagaacttgctgatgcctatcacaccaatatacgcttcagaagcctccaagagaacagtgatggtttaaccattacctcaaaggagggtggccgcaagaaaaagggcaagggaaaatctcatgatgttacagaaactagtgctgctcctgctaaggatatgaaggattcactagcagatagcttcctggacactgtaaggaagcttcagttaaacaagactcaggaaggagaggctgaggtgctgtcaagggatgggtatcgatcttccaagggaaaggcccaactaataactggaggttcatcatctagtacaccatgtctagatggtgatcatggtgccatttcaatggcttcttgtgccaaagatgatgtaggcaagggaggaggtagcagcaacagcaacatcaacaaacaatcaaagaagacatcaaagtttctcagagcccgattaggtgataactccttagctacacttgatttgagtcgtcctaccatgagccctgaacgaccagaaagggaatcgcaaggcccacaggtagggttgcctatgcgaggtgtttggaaaaatggagggggccagaagctctttacgggcaatggaaggaagtaaaatcattttgcagatgcagtttgacttttgaaacgagctggtcaatggtacaagcagattctgttgccaagtgtgcatattttgtgatcagttggttagctggtcgtgggagagctttattgctcctttgaagatcatcgcctttgaattacacctcactttcttgttttctttgccaaaacatcaactgaggctgaaacttgaaacagtaatggcgtgatattacgttactggccagttagtggaatccattggtagatggtattttacatgagctctgccaaatattatagttactttatcactttgtttgtgctggattgcagtcaaagacatgtatttagtgtgtctgtgatcaggccgaccctaactgaattcgtgaaagttgaaatctcaatgttcttcgtgttatttaaacggaattgctagaaaactctttcgtaagttttttgctcccaaaacttttagatttgtgaccataggatcaccttgagatttgtgcatgaagggggaaaaatactataaagaaaatttcacagt</dnaseqindica>

External Link(s)

NCBI Gene:Os05g0279400, RefSeq:Os05g0279400