Os05g0461000

From RiceWiki
Revision as of 20:11, 22 July 2012 by 124.16.129.48 (talk)
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Function

Please input function information here.

Expression

Please input expression information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this gene

Please input related labs here.

References

Please input cited references here.

Structured Information

Gene Name

Os05g0461000

Description

Clathrin adaptor complex, small chain family protein

Version

NM_001062295.1 GI:115464320 GeneID:4339020

Length

2686 bp

Definition

Oryza sativa Japonica Group Os05g0461000, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 5

Location

Chromosome 5:22687506..22690191

Sequence Coding Region

22687791..22687850,22687930..22688014,22688424..22688501,22688612..22688759,22689568..22689727
,22690012..22690014

Expression

GEO Profiles:Os05g0461000

Genome Context

<gbrowseImage1> name=NC_008398:22687506..22690191 source=RiceChromosome05 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008398:22687506..22690191 source=RiceChromosome05 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggaatcctgcccttcggtgaagaacatccttctgctggattccgaggggaagcgcgtcgccgtcaagtactacacggatgattggcctactctctcggcgaagctggccttcgagaagtcggtgttcgtcaagacccagaaagccactgccggagcagaagctgagattgtaatgtttgatggccacattgtggtgtataagttcatccaagacctccatttttttgttactggaggagaggaggagaatgagcttattttagcatcggtccttcaaggattcactgatgcagttgacattattctcagaaataacgtcgacaaaagaacagcactcgaaaatctggatctcatcctattgtgcctcgatgaaattgttgatggagggattgtcctggaaacagaaggaagtgtgatagctgaaaaggtgtcagcacatggaatagaaggtgctacttcactcgctgagcagactatagttcaagccctaacaacagcaagagagcacttgaccaaatctcttcttatgtga</cdnaseq>

Protein Sequence

<aaseq>MESCPSVKNILLLDSEGKRVAVKYYTDDWPTLSAKLAFEKSVFV KTQKATAGAEAEIVMFDGHIVVYKFIQDLHFFVTGGEEENELILASVLQGFTDAVDII LRNNVDKRTALENLDLILLCLDEIVDGGIVLETEGSVIAEKVSAHGIEGATSLAEQTI VQALTTAREHLTKSLLM</aaseq>

Gene Sequence

<dnaseqindica>2342..2401#2178..2262#1691..1768#1433..1580#465..624#178..180#ggcggatccgtgaagcccaacaacgaatgaagactagtagctgtgctcttcgtccacctcgactcgtcggctcgcctcggcttccttcgttggtccgcaccttctcccctcacccgccgccggggatccgctccgccgtctcgcctcccgccccgtggatccaccttgccgctccagatggtacgcgtccctgccccccccggctctcctcctcctcctctcccgattccatcgcgcgtgccgctacatgtgttggtgtttccggtttcttgattcgccccgatccgtcgcgttcgtccccggtttcgagtccgccggcgccgtcgtacggggcgtgtgtgtgctctctgtttgggtttgggaggctgggctccccgtttcttggttttcacggcaggtgcaaatcgggatctcgtttgttgttagttagttgatggcgttgctttgatggtttgctcgtacaggaatcctgcccttcggtgaagaacatccttctgctggattccgaggggaagcgcgtcgccgtcaagtactacacggatgattggcctactctctcggcgaagctggccttcgagaagtcggtgttcgtcaagacccagaaagccactgccggagcagaaggtaatgcgcatctgccccccctttcggcttgtgatagtgagtgacaacttagaagatgacttgtatctgatgattagtactatctcctagtatcccaatgtatgcatagtactgcttgtctcaaaccgtaatttttttgaagcatttgtataatctagttgcatcttttccatatgcatttagacaactctttatgatgtccaagaacgcaagttatctgcataccgtgcctaattgcctatgtttacacttgtctgtttatttttattacataaatgaaacgtgttgatgtgaataaggggctgtgtattctaggtatcttgatatcaagcataatttctgatcagtctttcaaaggtgctaaccatgcacctcttttttttgtttttctataggacttcttagaagagtttgtgaatcttaaaagagaagttgctaaaatatgcggtcagacaaatacattccatcacgtaaaacgcaatttgatttgatttcatgttaggttaatgtgatttgccccaacctaatattagttaatttgcttttagagttcatagactttttctaaaagaggtgtactgaagcacacccaaacataatacgattttttcagctttcgcttagttaaagttgtactatgttacacgatatcaaccaattattatgagcttggagagatgtatttgcattagttttccttataacaagtagtattgacagcgtcttatttgtgacttgtgagtgaaaaattacataccgtatgtctagttcaagtaattcactttatgtatatgtttccccctttcagctgagattgtaatgtttgatggccacattgtggtgtataagttcatccaagacctccatttttttgttactggaggagaggaggagaatgagcttattttagcatcggtccttcaaggattcactgatgcagttgacattattctcaggttatactcaacctatttaatgtatctttgtttttctaccttttattttgttttacatttatgtccctacctgattgcatgtattctgtttcccgtgtcatcggtttcagaaataacgtcgacaaaagaacagcactcgaaaatctggatctcatcctattgtgcctcgatgaaattgttgatggagggtaaatcctagtctcactggatgtcaaatgttcttattcctttcgtttgtatgtttggctttcatggcacgctttataatcggttgtctgctctagtaatgaacatgtatatttttgattggaggacaaatgaattctcttagcacatttactttgttaagaatcaaaattctgtaccttgaacaatcctagtttgaggtggcaaaatttgataaattagacaataaatgggaatgatattgaggtggcaaacttttgattaggccatgaacatatatgcctgtcaatctgatagtctattaatattttaatatttcaaagtgtttcaaaaagtttttgccagtctcctgatgtgtggtactgcaaactgtaataagctcaatagtacttgatctgaatgattatacaggattgtcctggaaacagaaggaagtgtgatagctgaaaaggtgtcagcacatggaatagaaggtgctacttcactcgctgagcaggtaagttttagccatgatcttactaaaggaagctgttcggtttaaccaaacataacgagttattgctctctgaatgcagactatagttcaagccctaacaacagcaagagagcacttgaccaaatctcttcttatgtgatgtgctctgcttttggagctgaagatggagtagcatcccgttgttacatctctaggactgatacgttcattgcaatagaaacgacggaacagaatatctgaatccatttgcgtgtagagtggcacgttcccttcattgacactatctggttcagttttgcgagtatttaaaaaactgcacaaacaagattgtgaacggtgattgtttcaattttgattgttctttgttttgtagatttatatatatgttgttgtgcagtggatcaatatattgcttatggagatg</dnaseqindica>

External Link(s)

NCBI Gene:Os05g0461000, RefSeq:Os05g0461000