Os05g0525000

From RiceWiki
Revision as of 20:13, 22 July 2012 by 124.16.129.48 (talk)
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Function

Please input function information here.

Expression

Please input expression information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this gene

Please input related labs here.

References

Please input cited references here.

Structured Information

Gene Name

Os05g0525000

Description

Protein kinase-like domain containing protein

Version

NM_001062629.2 GI:297604774 GeneID:4339374

Length

3403 bp

Definition

Oryza sativa Japonica Group Os05g0525000, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 5

Location

Chromosome 5:26197287..26200689

Sequence Coding Region

26197287..26197794,26197902..26198034,26198122..26198193,26198285..26198356,26198455..26198535
,26198642..26198805,26198895..26199160,26199250..26199376,26199734..26199802
,26199900..26200092,26200188..26200689

Expression

GEO Profiles:Os05g0525000

Genome Context

<gbrowseImage1> name=NC_008398:26197287..26200689 source=RiceChromosome05 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008398:26197287..26200689 source=RiceChromosome05 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgtccaggtaccccgacgatccacgcgacagagtatggacaccttgggactcgccatcaaattggaccgagatatcaacgacgaggccggtgcagcagacatacgacgacctgttcgaggtgccaacggcggtgatgcagacggctattgtcccaatgtttgccacagacaacatcgagctcgcatgggtagcctacacacagcccaaggacccgtcgccggggtacatcgccatcatgcacttctccgagctggagctcagcccccccagccgtgatgtgcgagaattctacatcaacctcaacggcaacatgatgtacagcaagggctacaagccagtgtatctctacgcccacgccatctacaacaccaaccccttcctacgatacccgcagtacaatatctccatcaacgccacctataactcgacgatgcgaccgttcatcaacgccatggaggtgtactccgttttctccaccaccaccattggcacatatggtcaggacgcttctgccatgatggtgatcaaggaaaagtatcaggtgaagaagaattggatgggtgatccgtgcattccgacagaatttacatgggaaagtttgacatgcagctatgaaaactccaaacacgtaataaaaataaacctgtcctccagtggtttgagtggtgagatatcatcttcttttggggatctcaaggctcttcaatacttggatttgtcaaacaacaatttgacaggttcgattccggatgcactttcacagttaccttcattgacagtattagatctgacaggaaatcaactcaatggttcaattccatctggacttctcaaaagaattcaagatggtaccctaaatataaaatatggaaataatccaaacctctgcaccaacgacaattcatgtcaggcagcaaaacacaagagcaagcttgccatctacatagtcgctcctgtagttctggttctggtgatagtatcagtcacaatactactcttttgccttctaggacaaaaaaagaagcaaggatcaatgaacacttctataaagccgcaaaatgaggcgaactatgtgccgacaaatgacagcgatgggcatggttcatcaatgcagcttgagaaccgacgatttacatataaagatctggaaaagataacgaacaactttcaacgagtgctcggccgaggagggtttgggaaggtctacgatggcttcttggaagaaggtactcaagtggcagtcaaattgaggtctgaatcttccaatcaaggtgataaggaatttctcgtagaggctcaaattttaactcggattcaccataagaaccttgtctccatgatcggttattgcaagaatgggaaatacatggcacttgtctatgagtatatgtcagaaggaacccttcaagaacacattgcgggtaaaagaaacaacgggagacatttaacctggagggagaggcttcgaatagcgttagaatccgctcaagggctagagtacctacacaagtggtgcaatccgcctcttattcatagagatgtgaaggctaccaacattctattgaatgcgaggctagaggctaagattgctgattttggcttgtccaagtcattcaatcttgagaatggcacccatgtatctacgaacacgcttgttggtactcccggatacgtggatccagagtaccaagcaacaatgcaaccatcgaccaagagtgatgtctatagctttggtgtcgtcctgctagaactggtaacaggaaagtcggctgtcctacgtgatccagagcccataagcattatccattgggcgcaacaacgcctagcacagggtaatatcgaagaagtggtggatgcatgtatgtgtggcgaccatgatgtaattggtgtatggaaggttgcggacatcgcattcaagtgtaccgcgcaggtatcagcgcgacggcccactatgactgacgtggttgcgcagttacaagagtgccttgagcttgaggaggagcattgtgccgtcaatgatgcaaacaacaacttctacaccagcaataacagcaaacctaactcaagttatgacacatacgccgctgaccactctatcgatgtgagtcagaacagtgttgcatttgagatggagaaaaattttggaaggatgccatcaacagcccccggtcccgccacacgataa</cdnaseq>

Protein Sequence

<aaseq>MSRYPDDPRDRVWTPWDSPSNWTEISTTRPVQQTYDDLFEVPTA VMQTAIVPMFATDNIELAWVAYTQPKDPSPGYIAIMHFSELELSPPSRDVREFYINLN GNMMYSKGYKPVYLYAHAIYNTNPFLRYPQYNISINATYNSTMRPFINAMEVYSVFST TTIGTYGQDASAMMVIKEKYQVKKNWMGDPCIPTEFTWESLTCSYENSKHVIKINLSS SGLSGEISSSFGDLKALQYLDLSNNNLTGSIPDALSQLPSLTVLDLTGNQLNGSIPSG LLKRIQDGTLNIKYGNNPNLCTNDNSCQAAKHKSKLAIYIVAPVVLVLVIVSVTILLF CLLGQKKKQGSMNTSIKPQNEANYVPTNDSDGHGSSMQLENRRFTYKDLEKITNNFQR VLGRGGFGKVYDGFLEEGTQVAVKLRSESSNQGDKEFLVEAQILTRIHHKNLVSMIGY CKNGKYMALVYEYMSEGTLQEHIAGKRNNGRHLTWRERLRIALESAQGLEYLHKWCNP PLIHRDVKATNILLNARLEAKIADFGLSKSFNLENGTHVSTNTLVGTPGYVDPEYQAT MQPSTKSDVYSFGVVLLELVTGKSAVLRDPEPISIIHWAQQRLAQGNIEEVVDACMCG DHDVIGVWKVADIAFKCTAQVSARRPTMTDVVAQLQECLELEEEHCAVNDANNNFYTS NNSKPNSSYDTYAADHSIDVSQNSVAFEMEKNFGRMPSTAPGPATR</aaseq>

Gene Sequence

<dnaseqindica>1..508#616..748#836..907#999..1070#1169..1249#1356..1519#1609..1874#1964..2090#2448..2516#2614..2806#2902..3403#atgtccaggtaccccgacgatccacgcgacagagtatggacaccttgggactcgccatcaaattggaccgagatatcaacgacgaggccggtgcagcagacatacgacgacctgttcgaggtgccaacggcggtgatgcagacggctattgtcccaatgtttgccacagacaacatcgagctcgcatgggtagcctacacacagcccaaggacccgtcgccggggtacatcgccatcatgcacttctccgagctggagctcagcccccccagccgtgatgtgcgagaattctacatcaacctcaacggcaacatgatgtacagcaagggctacaagccagtgtatctctacgcccacgccatctacaacaccaaccccttcctacgatacccgcagtacaatatctccatcaacgccacctataactcgacgatgcgaccgttcatcaacgccatggaggtgtactccgttttctccaccaccaccattggcacatatggtcaggacggtatgtacatagacgatagagaacacacacacacacacacacacaagtgaaatggcctaattgttttggcgcgtgttactgatcgaaatcatctttgcacttgacagcttctgccatgatggtgatcaaggaaaagtatcaggtgaagaagaattggatgggtgatccgtgcattccgacagaatttacatgggaaagtttgacatgcagctatgaaaactccaaacacgtaataaaaatgtaagtaattgagtccacacgtactgaatattggagttgcataacggaagtatgaaacagggtcatctgatcacattctctttgcagaaacctgtcctccagtggtttgagtggtgagatatcatcttcttttggggatctcaaggctcttcaatacttgtacgttctgagttgaataatgttaatttgttaaccttgtttgtaagaattttgcattaaaatttgcaaagtcttgcttcatatcttctagggatttgtcaaacaacaatttgacaggttcgattccggatgcactttcacagttaccttcattgacagtattgtaagtttcgcaacttctgtcaaattttactttattgcctagcatcatttgtattaacaaacatctacatataccttatgggcatatggcttctttagagatctgacaggaaatcaactcaatggttcaattccatctggacttctcaaaagaattcaagatggtaccctaaatataaagtaattaagtacaccacgttcttctcacagcaatctttgaatgtctaaactcaaccattttgagaaaatagattgatttgactaggcgtcttcattccatcaacagatatggaaataatccaaacctctgcaccaacgacaattcatgtcaggcagcaaaacacaagagcaagcttgccatctacatagtcgctcctgtagttctggttctggtgatagtatcagtcacaatactactcttttgccttctaggacaaaaaaagaagcaaggtgagggttacaaccatagcaactatctgctctatttctctgttcttgaacattactgatgctagttgctccattcttcgcttatgaaggatcaatgaacacttctataaagccgcaaaatgaggcgaactatgtgccgacaaatgacagcgatgggcatggttcatcaatgcagcttgagaaccgacgatttacatataaagatctggaaaagataacgaacaactttcaacgagtgctcggccgaggagggtttgggaaggtctacgatggcttcttggaagaaggtactcaagtggcagtcaaattgaggtctgaatcttccaatcaaggtgataaggaatttctcgtagaggtagaatttcgtcagttgaatttgatcttgctacatagagatttctactaagaaaagtccaagtaattagttaacatttgcttgtttaggctcaaattttaactcggattcaccataagaaccttgtctccatgatcggttattgcaagaatgggaaatacatggcacttgtctatgagtatatgtcagaaggaacccttcaagaacacattgcgggtacgtatttatgtttttgttcccgatcaagttgcagagtactccttccattttatattttaagttgtttgacttttttttcttagacaaacttctttaaatttgatcaagtttatagaaaaatatagtagtattttcaatacaatacaaacttattatcaaaatatattcaatgttagatttaaagaatctaatttgatattttagattgctaaatttttctataaacttgatcaaaaagtaaaagtcaaacgacttataatatgaaacagagggagtacactgtaaaacatcatgtagtggatcattttatagtcctcatggtctcacccctctttgttctctacctatttgtaggtaaaagaaacaacgggagacatttaacctggagggagaggcttcgaatagcgttagaatccgctcaaggtaactactttaaatttgtagtagtgctacttgaggtttgattttacattttctctaaaaggttggctagtagttaaattctttggttaatggtcagggctagagtacctacacaagtggtgcaatccgcctcttattcatagagatgtgaaggctaccaacattctattgaatgcgaggctagaggctaagattgctgattttggcttgtccaagtcattcaatcttgagaatggcacccatgtatctacgaacacgcttgttggtactcccggatacgtggatccagagtatgctaatttatatgtatttcttgatgttgttctttagtattttctatgaggaacacaaagtttaaggtttgtggtactgattgaatgtgcaggtaccaagcaacaatgcaaccatcgaccaagagtgatgtctatagctttggtgtcgtcctgctagaactggtaacaggaaagtcggctgtcctacgtgatccagagcccataagcattatccattgggcgcaacaacgcctagcacagggtaatatcgaagaagtggtggatgcatgtatgtgtggcgaccatgatgtaattggtgtatggaaggttgcggacatcgcattcaagtgtaccgcgcaggtatcagcgcgacggcccactatgactgacgtggttgcgcagttacaagagtgccttgagcttgaggaggagcattgtgccgtcaatgatgcaaacaacaacttctacaccagcaataacagcaaacctaactcaagttatgacacatacgccgctgaccactctatcgatgtgagtcagaacagtgttgcatttgagatggagaaaaattttggaaggatgccatcaacagcccccggtcccgccacacgataa</dnaseqindica>

External Link(s)

NCBI Gene:Os05g0525000, RefSeq:Os05g0525000