Os05g0542900
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Contents
Annotated Information
Function
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Expression
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Evolution
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Structured Information
| Gene Name |
Os05g0542900 |
|---|---|
| Description |
Virulence factor, pectin lyase fold family protein |
| Version |
NM_001062734.1 GI:115465198 GeneID:4339484 |
| Length |
2407 bp |
| Definition |
Oryza sativa Japonica Group Os05g0542900, complete gene. |
| Source |
Oryza sativa Japonica Group ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
| Chromosome | |
| Location |
Chromosome 5:27004622..27007028 |
| Sequence Coding Region |
27004647..27004805,27004884..27005015,27005100..27005282,27005378..27005404,27005516..27005723 |
| Expression | |
| Genome Context |
<gbrowseImage1> name=NC_008398:27004622..27007028 source=RiceChromosome05 preset=GeneLocation </gbrowseImage1> |
| Gene Structure |
<gbrowseImage2> name=NC_008398:27004622..27007028 source=RiceChromosome05 preset=GeneLocation </gbrowseImage2> |
| Coding Sequence |
<cdnaseq>atgccacctagttcaaggatggcgccgccgccgctcgccggcgtggtggtggtcgccgccgcgctcctgctcctcctgccggaggccgccgagccccgcactctcctctcgctcgacgacttcggcgccgtcggcgacggcgtcgccaacgacacgcaggccttggtggacgcctggagcgccgcctgcgccaccggcgaccacaccttcctccacgtccccgccgccaagtcctacctcgtctggccggtcaccctcgccggaccttgcagggaggagatcaagctcttcatctccggcaacatcgtcgcgccggagagccccgacgagtggccggagggcggcggcggcggcggcgaatggctccacttcgtcggcgtcagcgacctgacgctgagcggcgggggcgtcatcgacggccgtggccaccggtggtgggcccggtcgtgcaaggcaaagcacaacgcgaccgagaattgcactacccaggctgctccaaaggcgctgcacttcgaggattgtcagggtatcagcgtgatggggatcacgctgcagaacagccaggagagccacctgacgttcacccggtgctcgcacgtcaaggccaactacctgaggataacctcgccggaggacagcccggacaccaccggagttcacgtcgtcagctcgcgcaatgttcacatcatggacgactcgatctccacaggtcatgattgtgtctcgattgtgggcaattctacggatgttcgtctaagagccatctcatgtggacctggccatggtatcagtattggaggattaggcgagaaccgaagttaccacagggtagaaaagatcaagatggacaccctgttcatttccaacactgaaaacggcgtacgcgtcaagaccttccagggcggctgcggcaccgcccggaaaatgaagttcggtgacatccttatgaagaacgtcaagaacccgatcgtcatcgatcagcagaactcctcgagcaacgaaattccctgcggatcaaagaacggaagcgcggtgacggtgggggagatcagctacacggacatcaccggcacgtcggcgtcggagcgggcggtgacgttcgcgtgcagcgaggcggcgccgtgcagcaagctgtcgctggagaacgtgaacatcaccatggccggcgggcagaacgcgtccgcctactgccaccacgcgttcgggaagagcgtcggcgtcgtcgtcccggactcgtgcctcgggaaggaggactacctccgccggcaagtccccgcctccgccgccgccgccggcggcggaacgcaggagaagggaggagaagatgacgatcggtga</cdnaseq> |
| Protein Sequence |
<aaseq>MPPSSRMAPPPLAGVVVVAAALLLLLPEAAEPRTLLSLDDFGAV GDGVANDTQALVDAWSAACATGDHTFLHVPAAKSYLVWPVTLAGPCREEIKLFISGNI VAPESPDEWPEGGGGGGEWLHFVGVSDLTLSGGGVIDGRGHRWWARSCKAKHNATENC TTQAAPKALHFEDCQGISVMGITLQNSQESHLTFTRCSHVKANYLRITSPEDSPDTTG VHVVSSRNVHIMDDSISTGHDCVSIVGNSTDVRLRAISCGPGHGISIGGLGENRSYHR VEKIKMDTLFISNTENGVRVKTFQGGCGTARKMKFGDILMKNVKNPIVIDQQNSSSNE IPCGSKNGSAVTVGEISYTDITGTSASERAVTFACSEAAPCSKLSLENVNITMAGGQN ASAYCHHAFGKSVGVVVPDSCLGKEDYLRRQVPASAAAAGGGTQEKGGEDDDR</aaseq> |
| Gene Sequence |
<dnaseqindica>26..184#263..394#479..661#757..783#895..1102#1276..1357#1510..1618#1737..1856#1980..2297#agaaagtcgaagctgctgatcttggatgccacctagttcaaggatggcgccgccgccgctcgccggcgtggtggtggtcgccgccgcgctcctgctcctcctgccggaggccgccgagccccgcactctcctctcgctcgacgacttcggcgccgtcggcgacggcgtcgccaacgacacgcaggtgagcagcagctagccactccagcttcactagctcagctcacaatggcgtcttcactctttctgccgcctcgtccaggccttggtggacgcctggagcgccgcctgcgccaccggcgaccacaccttcctccacgtccccgccgccaagtcctacctcgtctggccggtcaccctcgccggaccttgcagggaggagatcaagctcttcgtacgcacacaccaccacacactatctccgcctcttccatttcttgtgccttatccacttcgttaatcgcgtccggttcctcagatctccggcaacatcgtcgcgccggagagccccgacgagtggccggagggcggcggcggcggcggcgaatggctccacttcgtcggcgtcagcgacctgacgctgagcggcgggggcgtcatcgacggccgtggccaccggtggtgggcccggtcgtgcaaggcaaagcacaacgcgaccgaggtaaccaatggtctcctccatgaccatgatgttgccaattgcaacacagaaatatctgaattattctgaagttctgaacaatcttgtctctgcagaattgcactacccaggctgctccaaaggtgagattttcgctttaatttgatcagagatcttggctagctcgagaggatttggaccaaaaagatggagaattcatgcatggattgcattttcgcggtgttaatttgcaggcgctgcacttcgaggattgtcagggtatcagcgtgatggggatcacgctgcagaacagccaggagagccacctgacgttcacccggtgctcgcacgtcaaggccaactacctgaggataacctcgccggaggacagcccggacaccaccggagttcacgtcgtcagctcgcgcaatgttcacatcatggacgactcgatctccacaggtactacacatttttttttcttctgaagaaatggagctttgctctgaatttctgaatgatgtctgttgctgaaacagatgtctcgtttgaaattagttgatcagatatgttttgcaggacagtaaaaaggctcacaaagaacattttcttccccttctttttgcctttttaaggtcatgattgtgtctcgattgtgggcaattctacggatgttcgtctaagagccatctcatgtggacctggccatggtatcaggttagcatttttttctccatcttttcagtggaatttgcatcagattttgaactaaattcagacaatgactccacccaaacacactccacatgaccacatccatttatagtagcagttcgtaacagagctaattaacagtttgtgcttgtcagtattggaggattaggcgagaaccgaagttaccacagggtagaaaagatcaagatggacaccctgttcatttccaacactgaaaacggcgtacgcgtcaagaccttccaggttaaccgtaaacccaacgcccacttctcacatgaatcttcgtcagaaacacccaagattacactgaactctgaactcaaaactgcctagctagctaacttctgctgttgttcttcagggcggctgcggcaccgcccggaaaatgaagttcggtgacatccttatgaagaacgtcaagaacccgatcgtcatcgatcagcagaactcctcgagcaacgaaattccctgcggatcaaaggtacagtgagctcatgatcagcatctgatctgatcagcacatagtagaagatcaacatctctgaacattttgcctaacatctctgaacattgagttttttggggtggattggatggtgtgcagaacggaagcgcggtgacggtgggggagatcagctacacggacatcaccggcacgtcggcgtcggagcgggcggtgacgttcgcgtgcagcgaggcggcgccgtgcagcaagctgtcgctggagaacgtgaacatcaccatggccggcgggcagaacgcgtccgcctactgccaccacgcgttcgggaagagcgtcggcgtcgtcgtcccggactcgtgcctcgggaaggaggactacctccgccggcaagtccccgcctccgccgccgccgccggcggcggaacgcaggagaagggaggagaagatgacgatcggtgaaaccgtggcaggttaagtcagcgtgtgtagtggacgtgttcacatcctttaccataataacgctattattacatgtactaacgtgtgaggataataaaagtttagaaccc</dnaseqindica> |
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