Os05g0301500

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Revision as of 10:15, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os05g0301500| Description = Similar to Ribophorin I (Fragment)| Version = NM_001061669.1 GI:115463068 GeneID:4338348| Length = 4742 bp| Definit...")
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Gene Name

Os05g0301500

Description

Similar to Ribophorin I (Fragment)

Version

NM_001061669.1 GI:115463068 GeneID:4338348

Length

4742 bp

Definition

Oryza sativa Japonica Group Os05g0301500, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 5

Location

Chromosome 5:13507364..13512105

Sequence Coding Region

13507426..13507539,13507658..13507702,13508272..13508900,13508995..13509142,13509239..13509415
,13509795..13509863,13509967..13510056,13510268..13510426,13511277..13511501
,13511662..13511853

Expression

GEO Profiles:Os05g0301500

Genome Context

<gbrowseImage1> name=NC_008398:13507364..13512105 source=RiceChromosome05 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008398:13507364..13512105 source=RiceChromosome05 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggcgacgccaccgccgctccgccgcgtcgccgccctcctcctcctcctcgtcgccgccgcctccacccccaccgcacgggccgatctcgtcgtcaccagggcggatcggaaggttgacctgacttcgcacatcgttcgtgtcctcacttcgctcaaggttgagaatagtggaccggaggctgtttctcaatttctactggcgtttcccaatgtccaagcaaagaacttagcagctataagagcatttggtactgaggaaaaggtgaaaggtccaagtatggtccttccgattgaagttgttcagccttctggagtgcccccagaacttacattcttttcggcatctttatccaaacctttggagaaggggaagactcttcacttagatgtcctgaccgtatttacgcactctgtccagccattccccgaagaaatcacacaagctgaatcgcagcttgttgtctatcaggacagtgctcagtatctgtcaccttaccctgttaaggtacagacacttagtatcagattgcctggtggaagagttgagtcctacacaaagtacccaaacacaaaacttgcagagtcagaactaaaatatggaccatatgaagatcttccaccgttttcctactcccctatggttgtgcactatgagaacaataacccttttgcagttgcaaaggaagttataagggagatagagatatctcactgggggaatgtacagattacagaacattacaacattgctcatggtggtgccaaactcaagggtgaattttccaggattgattaccaatctagaccgtacataagaggggtctcatcttttaggcatcttattgctagactgcctccaagggcacattctatatactacagagatgagattggtaacatttcaacatcacatttatggagtgattccaagaagactcaacttgaagttgagccaaggtttcctttgtttggtggttggcaaacgacctttaccattggttatggtttacctcttcaagactttgttttcaattctgatggaaagagattcctcaatatcacatttggttctccagtggaggagattctcatagaaaagcttattgtgaaggttgttctgcctgaaggttcaaaggatattgatatttcagttccatttccaacaaagcaagagcaagaggtgaagtattcacaccttgatatttctggaaggccagtggttgtcttggagaagcttgatgttattccagagcataatctatatttccaggtttactacaggttcaacaacatctctctactcagagaaccgatgatgttgataactggcttctttctcctcttcatggcctgtattgtttacatgcgcactgacatgtcaatctctaagaattctccttcttatctggcaaaggtgcagtgggatgaggtacagagcatcatccagcaaatccaggctatcttcaaccaatgtctagcagctcatgataaactggagacctcattacacgagttatctaggtcaggagatgttaaatcatgcaaagtggctcgtaagacagctgatgcacagtttaaggaattagcaaaagagttgaagccattgttgacatccctgcagtcatcctctcagtcttaccagatatggccaaaggtagaggaattggttgccaaggagagagagttgcaggataagctcatgacaaggcattccactgtggttgacagctttgaaaagaagttgcgagggcaagatgtggagaacaggattgctgcccagcagcagaaagttgctgccctgaggcaagaggtcgaatctcttttagagtacatcagtgagatctga</cdnaseq>

Protein Sequence

<aaseq>MATPPPLRRVAALLLLLVAAASTPTARADLVVTRADRKVDLTSH IVRVLTSLKVENSGPEAVSQFLLAFPNVQAKNLAAIRAFGTEEKVKGPSMVLPIEVVQ PSGVPPELTFFSASLSKPLEKGKTLHLDVLTVFTHSVQPFPEEITQAESQLVVYQDSA QYLSPYPVKVQTLSIRLPGGRVESYTKYPNTKLAESELKYGPYEDLPPFSYSPMVVHY ENNNPFAVAKEVIREIEISHWGNVQITEHYNIAHGGAKLKGEFSRIDYQSRPYIRGVS SFRHLIARLPPRAHSIYYRDEIGNISTSHLWSDSKKTQLEVEPRFPLFGGWQTTFTIG YGLPLQDFVFNSDGKRFLNITFGSPVEEILIEKLIVKVVLPEGSKDIDISVPFPTKQE QEVKYSHLDISGRPVVVLEKLDVIPEHNLYFQVYYRFNNISLLREPMMLITGFFLLFM ACIVYMRTDMSISKNSPSYLAKVQWDEVQSIIQQIQAIFNQCLAAHDKLETSLHELSR SGDVKSCKVARKTADAQFKELAKELKPLLTSLQSSSQSYQIWPKVEELVAKERELQDK LMTRHSTVVDSFEKKLRGQDVENRIAAQQQKVAALRQEVESLLEYISEI</aaseq>

Gene Sequence

<dnaseqindica>63..176#295..339#909..1537#1632..1779#1876..2052#2432..2500#2604..2693#2905..3063#3914..4138#4299..4490#aaagcgcttcttcactcgatctcgccgcgagagacccaccgatctgccctccgccccccaacatggcgacgccaccgccgctccgccgcgtcgccgccctcctcctcctcctcgtcgccgccgcctccacccccaccgcacgggccgatctcgtcgtcaccagggcggatcggaaggtgagctcccgcctcgcttctttgtctctctgcgcgccctccagatctcccgacgagcacgccgcgccttctgcccccggatctgaggcctctttgcccttccttttcttttttgcaggttgacctgacttcgcacatcgttcgtgtcctcacttcgctcaaggtacacgcggttgttgttgctgtgttctctcgaattttgtttgtctagttggggggagattcagccgttccccggttcgttcgtccgatctgttaagggagcttctcatttcatcgtgatatagttctggatgggtagatgtttgtctcttcatcgctgataatatgataagagcgctgtaatgtgtggatggatcatggatggagttagcgtttcatcattaatggtgtcctgtataggttcatcgcctcgacgtgtgctcacgagtgctccaaattcttaacgtctcaatttgggatgttcaattccatgtctcgcatgatttggcctgcagattctttgggttgcaagctctcttctggttgatttgaagttggggtttaactggcaataggggttctgtgtttgtcagtgccaccaccaattctaaaatctccgagtaactctttttgaattacactttgtctgatgccagtcctcactagtagatagagtaatatatggggttttgtctatgcacatgtgatatgctgaggttttgcttttgttgtaatctctgttttttttaggttgagaatagtggaccggaggctgtttctcaatttctactggcgtttcccaatgtccaagcaaagaacttagcagctataagagcatttggtactgaggaaaaggtgaaaggtccaagtatggtccttccgattgaagttgttcagccttctggagtgcccccagaacttacattcttttcggcatctttatccaaacctttggagaaggggaagactcttcacttagatgtcctgaccgtatttacgcactctgtccagccattccccgaagaaatcacacaagctgaatcgcagcttgttgtctatcaggacagtgctcagtatctgtcaccttaccctgttaaggtacagacacttagtatcagattgcctggtggaagagttgagtcctacacaaagtacccaaacacaaaacttgcagagtcagaactaaaatatggaccatatgaagatcttccaccgttttcctactcccctatggttgtgcactatgagaacaataacccttttgcagttgcaaaggaagttataagggagatagagatatctcactgggggaatgtacagattacagaacattacaacattgctcatggtggtgccaaactcaagggtgaattttccaggttcttctcccttctaacttgtgctttaaatagctcacctttagctggatagaaaaaatttgtccagagataactgatgtgttcaaatttgcaggattgattaccaatctagaccgtacataagaggggtctcatcttttaggcatcttattgctagactgcctccaagggcacattctatatactacagagatgagattggtaacatttcaacatcacatttatggagtgattccaagaaggtacacttgctttttattatctcagtttcaaggctataatattcccagcaaaattgcaaaagtgagtgcatatgctgaatatttatcctattgcagactcaacttgaagttgagccaaggtttcctttgtttggtggttggcaaacgacctttaccattggttatggtttacctcttcaagactttgttttcaattctgatggaaagagattcctcaatatcacatttggttctccagtggaggagattctcatagaaaagcttattgtgaaggtatgttctcctgtacccatctggcacgcacggtaaaatctttcattttttacccttgtgttccatgttttgttcttaattgcactgatatagaattttagacaccaaacataattccttgtgttgcctatttctttgatattgaaattagatcttcatttattgctgggaacctgcaactaacatacccttttgttgtcttggctatcttctggtgtattgtccttcacttagttatttttattttatgtttctaaaaaaatgtagatgacatgtcatggttagataatcaataagaaatacatttgcacatatttccatgaacgtgatgttacatattaatttccctccctgcataaaaacctttctttttgaacaggttgttctgcctgaaggttcaaaggatattgatatttcagttccatttccaacaaagcaagagcaagaggtgacttcttgttggatgatacacacacacacacacacacatatattctgaacaactagctgatcctgttcttttgttgtaatgacaatgatttgtggtgcaggtgaagtattcacaccttgatatttctggaaggccagtggttgtcttggagaagcttgatgttattccagagcataatctatatttccaggtttgtcttcagacttaatttgttgtgcaactaattttacccctccatgaaaagttgagcgttgctaaattattaacctgactgaagagtatgtaaaatctgctatgcaaaaggcttactgcaccatgaatactttctgtgagttgtctatctcatggtgttttatgtgaaccatagcaaacttatggtgttaatgccctacaatatgcaggtttactacaggttcaacaacatctctctactcagagaaccgatgatgttgataactggcttctttctcctcttcatggcctgtattgtttacatgcgcactgacatgtcaatctctaagaattctccttcttatctggcaaaggtgcagtgggatgaggtatggtcgttttagtcaaatctcccctttgaggattggattttgatgatttacgagaaatgtttaaatctatcttgccataacctttcttctagtgaactacagtttgttactatactgctgctatgtttaggatgagcactaattacagtgaaataaacttatgaatcataattcgaattggtttgctagctcatacggagtactatgtagcggtgttatttttatgggagaaaaaaaatgcaatgataaaaacttgaactagtaaatatcagatgacaaacatattagggcctgagcaaatagctaggaaaggtctcaaaatgtgcagggttgaatggtggccttaaattttggggagggcttgtttactagtaattttagttggataagtgacaagtttactatcagaatcatgtgagaacttttagttggataagtgacaagtttactatcagaatcatgtgagaacgctgtcctttctgttaaagattggcttttgagagctttggtccaaaaatggacaagttacaagtgaagggtcttaaccacggtggaatagaatctgcaaaacaagctctaaatgaatctggaggtaaagagcagtccatgctgtgttaaaagcgagcttcataattgacagggaaaaaaatgttacttgaaaagtcctaaatcttcaatccaaacttcaaagttaagaagataataattgcgtatcattggtttaagcagttaagctggatcaacattaattgtagtgtttctggaattgaagaatgctttaaacttgtggagacctcttactttctgcagactaacctctacaatctatttcatactttttgtacaggtacagagcatcatccagcaaatccaggctatcttcaaccaatgtctagcagctcatgataaactggagacctcattacacgagttatctaggtcaggagatgttaaatcatgcaaagtggctcgtaagacagctgatgcacagtttaaggaattagcaaaagagttgaagccattgttgacatccctgcagtcatcctctcagtcttaccagatatggccaaaggtttgctcaacgtcttgtgcatagaccacctagaagagagagatacttactagtgcatctttattcaccatttaatttgaatttgagttctttgcccacattctctaattaagtatatgcgccatagtggttacagttggcctttttttctttaatgcaggtagaggaattggttgccaaggagagagagttgcaggataagctcatgacaaggcattccactgtggttgacagctttgaaaagaagttgcgagggcaagatgtggagaacaggattgctgcccagcagcagaaagttgctgccctgaggcaagaggtcgaatctcttttagagtacatcagtgagatctgagcgaatccggcgctgcatggtatgtcaatttagcaattagactggagaatggatcacctggtttctcattgtgcgaatttgatatgctcgaattcgaatcaaatactcgtagatttcctgttgataacctgtctcagtcattcaggctgggagtttcaaaggaccttgtaacatgataagcacttgtgaccgcctgaaactgattgaaattttgcacttaatagcaaatcacgcgacctttcaccttgtttc</dnaseqindica>

External Link(s)

NCBI Gene:Os05g0301500, RefSeq:Os05g0301500