Os05g0304900

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Revision as of 10:15, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os05g0304900| Description = Glycoside hydrolase, family 10 protein| Version = NM_001061680.1 GI:115463090 GeneID:4338360| Length = 2992 bp| Def...")
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Gene Name

Os05g0304900

Description

Glycoside hydrolase, family 10 protein

Version

NM_001061680.1 GI:115463090 GeneID:4338360

Length

2992 bp

Definition

Oryza sativa Japonica Group Os05g0304900, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 5

Location

Chromosome 5:13733403..13736394

Sequence Coding Region

13733509..13733859,13734106..13734744,13735299..13735445,13735632..13735733,13735877..13736052
,13736323..13736350

Expression

GEO Profiles:Os05g0304900

Genome Context

<gbrowseImage1> name=NC_008398:13733403..13736394 source=RiceChromosome05 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008398:13733403..13736394 source=RiceChromosome05 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgcatgctcccctgcttttttggcatggctgggtgaaaatcgatgggccaacaactgctcatgtgaaagccaagatattgacgctagcaaacgctgcatctcaatgccttggcacggctctggtgcgaaacgactgttggtccttcctcaagggtggtttcaccctcaactccgcttcagaaacctccgtcctctatttccagactgcaagcccaaatgcttcaacgatctcgatcagaagtgcctctttgcaaccattttcacctgaacaatggaatcagcacagggaggaccgtattcagctgaaccggaagcgctttgtcaatgtccacgtggcggacagcaacgggagtcgcgtggttggtgccaaggtcgcggtgcatcagatcaccagggatttcccattcggctctgccatcagcaggacaatccttgggaacaaactttatcaggaatggttcaacaagaggttcaatgcggcggtgttcgagaacgagctcaagtggtatgcaacggagccatacccggggaaggaggactatacggtggcggaccagctgttgcagtttgtgcaggccaacgacgcagtggcgcgcgggcataatatcttctgggaggacccaaagtacacgccagcatgggtgaagaatctgacggggtcacagctacgtgctgccgtctctggccgcatcgagagcctcctctctcggtacaagggcgactttgtgcattgggacgtcagcaacgagatgctgcacttcgacttctatgagaaccgccttggcggcaacgccaccgtcgacttcttcgacacagccaagcgcgccgacccgctagccacgctcttcctcaacgacttcaacgtcgtcgaggtctgcgatgacctcagctccagtgccgactcctacgtctcccgcctccgccaactcgccgatggcggcgtcaccttcgaaggcatcggccttgagggacacttcggcaagcccaacatcccctacgtccgcgccgtgctcgataagctcggcaccctgcgtctccccatttggcttaccgagatcgacatcagtagctccttcgaccccaaaacgcaggctgcatacttggaagaggtgctccgagaagggtttgcccatccatccgtggatggcataatgctgtggacggcaatggacaccaatgctagctgctaccagatgtgcctgaccaaccagaacttcaccaaccttcctgcgggagatgtggtggacaagctgctgggggagtggcaaaccaaggagaccctgggaaccaccaatgaccgcggctccttcaacttttctgccttcttgggagaatacaagctctcggtcacctatctcaacctcactgccgagggaaccttctcgctggcccatagcgacgacaccaagcatatcaacatccgtctatcaccatcatgttga</cdnaseq>

Protein Sequence

<aaseq>MHAPLLFWHGWVKIDGPTTAHVKAKILTLANAASQCLGTALVRN DCWSFLKGGFTLNSASETSVLYFQTASPNASTISIRSASLQPFSPEQWNQHREDRIQL NRKRFVNVHVADSNGSRVVGAKVAVHQITRDFPFGSAISRTILGNKLYQEWFNKRFNA AVFENELKWYATEPYPGKEDYTVADQLLQFVQANDAVARGHNIFWEDPKYTPAWVKNL TGSQLRAAVSGRIESLLSRYKGDFVHWDVSNEMLHFDFYENRLGGNATVDFFDTAKRA DPLATLFLNDFNVVEVCDDLSSSADSYVSRLRQLADGGVTFEGIGLEGHFGKPNIPYV RAVLDKLGTLRLPIWLTEIDISSSFDPKTQAAYLEEVLREGFAHPSVDGIMLWTAMDT NASCYQMCLTNQNFTNLPAGDVVDKLLGEWQTKETLGTTNDRGSFNFSAFLGEYKLSV TYLNLTAEGTFSLAHSDDTKHINIRLSPSC</aaseq>

Gene Sequence

<dnaseqindica>2536..2886#1651..2289#950..1096#662..763#343..518#45..72#gaattttcctgccctgttttctactgtttggcacgcacattttcatgcatgctcccctgcttttttggcatggtactgattttatgactttactatttggtactggtctgttgagcattttcttgaaagttttcttcaagcaatcgttattttttaggtgaattaaaaattattggactagcaaatattcaagtgaaatagataattgtttcccttttcatttaatttgattttgttattggtattcagatttctgatggacctgcaattctactggcttaattttgtcatttcctgggagtaaaattaaccttgtggaattgcttgcttgattttctctaggctgggtgaaaatcgatgggccaacaactgctcatgtgaaagccaagatattgacgctagcaaacgctgcatctcaatgccttggcacggctctggtgcgaaacgactgttggtccttcctcaagggtggtttcaccctcaactccgcttcagaaacctccgtcctctatttccaggtgatatacttaatttaattcctcacggttaagtcacagagagcacagtaatatattggcatacaaatttagctgaacctagtttagatcttgacttggtgaattaattaatcgtcatgcagtttgcaatttattcactgcagactgcaagcccaaatgcttcaacgatctcgatcagaagtgcctctttgcaaccattttcacctgaacaatggaatcagcacagggaggaccgtattcagctggtaataaaatgtacttatactgtttcgtcgactcttaggctgtgtaactcttttgggtatagagaccggtttaatccattataaaaaaactgtcacacgatggataatttaaaaaaaatccaacttaattgtgaggaagtgtggagcaaatgatgatgccagcatgtaattctttttcacgaacagaaccggaagcgctttgtcaatgtccacgtggcggacagcaacgggagtcgcgtggttggtgccaaggtcgcggtgcatcagatcaccagggatttcccattcggctctgccatcagcaggacaatccttgggaacaaactttatcaggttattgttttcatgattctttccttaatttttttctgagatatatgacgaactttagcattgatttatgaaattaaaccgtgtgttaagcaacaaaacaaatagtggacagtaggttcgtagcggattgcaggtgtctatgtagcgaaccacggataactgaagctaagttccaataacgaaatttaataatcacacataaatttgagtatgtgtatcattaataatgattttataatacattaacaaagaaactgagaaataaattagtgatatttcgatacataacatagattaaagagtttataatgtgttgattcgtaattcgtggagcaagcgtcggagttggcaccatcgacgcctttagttgttatatcatacagtgactgctaccacggatcgctaactcagctcatatagcggctgctaggttacagctcgctatatccaatcggtagcgatagacattaaatgttatttagttgttttggtgttaagatatataatatatgacaatttagtaataataatgtacttaattaatgaatttgtaggaatggttcaacaagaggttcaatgcggcggtgttcgagaacgagctcaagtggtatgcaacggagccatacccggggaaggaggactatacggtggcggaccagctgttgcagtttgtgcaggccaacgacgcagtggcgcgcgggcataatatcttctgggaggacccaaagtacacgccagcatgggtgaagaatctgacggggtcacagctacgtgctgccgtctctggccgcatcgagagcctcctctctcggtacaagggcgactttgtgcattgggacgtcagcaacgagatgctgcacttcgacttctatgagaaccgccttggcggcaacgccaccgtcgacttcttcgacacagccaagcgcgccgacccgctagccacgctcttcctcaacgacttcaacgtcgtcgaggtctgcgatgacctcagctccagtgccgactcctacgtctcccgcctccgccaactcgccgatggcggcgtcaccttcgaaggcatcggccttgagggacacttcggcaagcccaacatcccctacgtccgcgccgtgctcgataagctcggcaccctgcgtctccccatttggcttaccgagatcgacatcagtagctccttcgaccccaaaacgcaggtacgtagttacatactcacaaatatatatctactagatgtaaaactcgagtgacagaccataagaaatactttctctatctcaaaacgtagctatctagtaccggatttaacactacctaaaactactaatctggacatgtgtagatagtgtcaaatccaatactaggtagctacatgagaaggaggtagtatataacctatatatctcattgttaatgtactatacgatgatatgatgttgcaggctgcatacttggaagaggtgctccgagaagggtttgcccatccatccgtggatggcataatgctgtggacggcaatggacaccaatgctagctgctaccagatgtgcctgaccaaccagaacttcaccaaccttcctgcgggagatgtggtggacaagctgctgggggagtggcaaaccaaggagaccctgggaaccaccaatgaccgcggctccttcaacttttctgccttcttgggagaatacaagctctcggtcacctatctcaacctcactgccgagggaaccttctcgctggcccatagcgacgacaccaagcatatcaacatccgtctatcaccatcatgttgaaattgaattgattcttgtgttatatagaaggatgtgatgatgaaaacttggtagtgtaccttaattagagggagactccatacgtttgtgttgatacaatggattc</dnaseqindica>

External Link(s)

NCBI Gene:Os05g0304900, RefSeq:Os05g0304900