Os05g0581300

From RiceWiki
Revision as of 20:15, 22 July 2012 by 124.16.129.48 (talk)
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Function

Please input function information here.

Expression

Please input expression information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this gene

Please input related labs here.

References

Please input cited references here.

Structured Information

Gene Name

Os05g0581300

Description

Protein prenyltransferase domain containing protein

Version

NM_001062965.2 GI:297604971 GeneID:4339725

Length

5334 bp

Definition

Oryza sativa Japonica Group Os05g0581300, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 5

Location

Chromosome 5:29005552..29010885

Sequence Coding Region

29005552..29007604,29010824..29010885

Expression

GEO Profiles:Os05g0581300

Genome Context

<gbrowseImage1> name=NC_008398:29005552..29010885 source=RiceChromosome05 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008398:29005552..29010885 source=RiceChromosome05 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgctcgaccacctggctcgcctgaagcagctagcccgatcgagcaggctcgcggacgcgcaccgcctgttcgatggaatgccacgccgcgacgaggttgcctacgccaccctcctcgccggccatgccgccgcgggggacttccccggcgcgatggcgctcttctcccgcctccgcgcctcttctccgccgctcgcgcccgcggaccctttcgtcctcagcctcgtcttcaagtcctgcgccgcggcggccgacgcgaggttcctcccgcacgcggcgtcgctgcacgcgttcgcggtccgctcctcggccgtctcctccgtcttcgtcgccacggccctggccgacgtctacgccaaggctggatgcctcggcctcgcgcttaaggtgttcgacgaaatgccgcacaagaacgtggtctcttggaccacgctggttgcctcgctgacgagggccggccggcgccacgaagcgctccgccgcttctccgagatgcgcgcctctggcgtgcactgcgattcgtacgcctacgcggccgcgctcacagcgtgcgccgacgccggattgctgtctcgcgggcgcgaggtgcacgccttctgcgccaagctcggccttgactcgacgccctacgtcgccaacacgctcgccactctgtacgcgcgctgcagcgacgtcgaccgtgcgctggctgctgtcagccgcatgggcacgcgcgacgtcgccgcttggacgacggtgatctctgcctatgtgcagaccggccgtgcaaaggaggccatcgaggcgtttgtccgaatgcttcgtgaggaatcatcagtggctgcatcgccgaatgaatacacatatgctgcagttattgctgcgtgtgcagatattgcttgggtctgtcttggggagcagttgcatgctcaagctgcaaggaaaggcttcgcctgtgcccgctcggtggccaattctcttgtcacactctacacacgcgccgcgggctgtctgtcggctgctgatgctgttttccgggagagtgtagtcaaggatgttgtctcttggagtgccatcatatcaggctatgcacaggaaggcctagctgaggatgcattcgctctgttcagagaaatgaggcatcacagcggctgtcctcgtccgaacgaattcactcttgccagtctcctaagtgtttgtgcaactgctgcgtcactggatgctggacggcaactccacacacttgctgttgctgctggacttgaacatcatgcaatgatcaggagtgcgctcattgacatgtatggaaagagtggtagcatgttagatgctgatatagtattctcccatcgtgtgaaagatgatgttgtttcgtggactgcaatgatcgttggatatgctgagcatgggcacagcaagaaggcacttgaattgttccaggaaatgtgtcatgttggactaaagccagaccatgtcacattcataggtgtgctcaatgcttgctgtcatgctggggaagtcgagcttggattgagatacctcaatgaaatgaaccaaatttatggcctgtatcctgccaaggagcactatggctgtgtggtggatttgttgggcagagctggtagaataaacgaagctgaggaactgattggaaagatagctgccaacgaaagagatggtgttgtttggacatctttgcttagggcgtgtgcagcccgaggagaagaggaaactggaaagaaagctgcagagagggcaatggaggcagaaccatggggcgcaggagcacatgtggcaatggcgaatctttatgccagcaagggacaatggcacgaggctgcacaagaacggcatatgatgaagcagaaaggggttgtgaaaggggcaggctggtcatcaatcacggttggaggggagggcaggagagtaggggtgtttgtggccagtgatcgcacacatccccaggacagtgcaatctacaggatgcttgagttgatatatttcggaactggaatggctcgctatgtacctgatcagttggatttaggatctgaagtggatatgatgattagcaagcagcaaactatccgggagcttttgcagcctagagtcaaggccacggaaactgtgctttga</cdnaseq>

Protein Sequence

<aaseq>MLDHLARLKQLARSSRLADAHRLFDGMPRRDEVAYATLLAGHAA AGDFPGAMALFSRLRASSPPLAPADPFVLSLVFKSCAAAADARFLPHAASLHAFAVRS SAVSSVFVATALADVYAKAGCLGLALKVFDEMPHKNVVSWTTLVASLTRAGRRHEALR RFSEMRASGVHCDSYAYAAALTACADAGLLSRGREVHAFCAKLGLDSTPYVANTLATL YARCSDVDRALAAVSRMGTRDVAAWTTVISAYVQTGRAKEAIEAFVRMLREESSVAAS PNEYTYAAVIAACADIAWVCLGEQLHAQAARKGFACARSVANSLVTLYTRAAGCLSAA DAVFRESVVKDVVSWSAIISGYAQEGLAEDAFALFREMRHHSGCPRPNEFTLASLLSV CATAASLDAGRQLHTLAVAAGLEHHAMIRSALIDMYGKSGSMLDADIVFSHRVKDDVV SWTAMIVGYAEHGHSKKALELFQEMCHVGLKPDHVTFIGVLNACCHAGEVELGLRYLN EMNQIYGLYPAKEHYGCVVDLLGRAGRINEAEELIGKIAANERDGVVWTSLLRACAAR GEEETGKKAAERAMEAEPWGAGAHVAMANLYASKGQWHEAAQERHMMKQKGVVKGAGW SSITVGGEGRRVGVFVASDRTHPQDSAIYRMLELIYFGTGMARYVPDQLDLGSEVDMM ISKQQTIRELLQPRVKATETVL</aaseq>

Gene Sequence

<dnaseqindica>1..2053#5273..5334#atgctcgaccacctggctcgcctgaagcagctagcccgatcgagcaggctcgcggacgcgcaccgcctgttcgatggaatgccacgccgcgacgaggttgcctacgccaccctcctcgccggccatgccgccgcgggggacttccccggcgcgatggcgctcttctcccgcctccgcgcctcttctccgccgctcgcgcccgcggaccctttcgtcctcagcctcgtcttcaagtcctgcgccgcggcggccgacgcgaggttcctcccgcacgcggcgtcgctgcacgcgttcgcggtccgctcctcggccgtctcctccgtcttcgtcgccacggccctggccgacgtctacgccaaggctggatgcctcggcctcgcgcttaaggtgttcgacgaaatgccgcacaagaacgtggtctcttggaccacgctggttgcctcgctgacgagggccggccggcgccacgaagcgctccgccgcttctccgagatgcgcgcctctggcgtgcactgcgattcgtacgcctacgcggccgcgctcacagcgtgcgccgacgccggattgctgtctcgcgggcgcgaggtgcacgccttctgcgccaagctcggccttgactcgacgccctacgtcgccaacacgctcgccactctgtacgcgcgctgcagcgacgtcgaccgtgcgctggctgctgtcagccgcatgggcacgcgcgacgtcgccgcttggacgacggtgatctctgcctatgtgcagaccggccgtgcaaaggaggccatcgaggcgtttgtccgaatgcttcgtgaggaatcatcagtggctgcatcgccgaatgaatacacatatgctgcagttattgctgcgtgtgcagatattgcttgggtctgtcttggggagcagttgcatgctcaagctgcaaggaaaggcttcgcctgtgcccgctcggtggccaattctcttgtcacactctacacacgcgccgcgggctgtctgtcggctgctgatgctgttttccgggagagtgtagtcaaggatgttgtctcttggagtgccatcatatcaggctatgcacaggaaggcctagctgaggatgcattcgctctgttcagagaaatgaggcatcacagcggctgtcctcgtccgaacgaattcactcttgccagtctcctaagtgtttgtgcaactgctgcgtcactggatgctggacggcaactccacacacttgctgttgctgctggacttgaacatcatgcaatgatcaggagtgcgctcattgacatgtatggaaagagtggtagcatgttagatgctgatatagtattctcccatcgtgtgaaagatgatgttgtttcgtggactgcaatgatcgttggatatgctgagcatgggcacagcaagaaggcacttgaattgttccaggaaatgtgtcatgttggactaaagccagaccatgtcacattcataggtgtgctcaatgcttgctgtcatgctggggaagtcgagcttggattgagatacctcaatgaaatgaaccaaatttatggcctgtatcctgccaaggagcactatggctgtgtggtggatttgttgggcagagctggtagaataaacgaagctgaggaactgattggaaagatagctgccaacgaaagagatggtgttgtttggacatctttgcttagggcgtgtgcagcccgaggagaagaggaaactggaaagaaagctgcagagagggcaatggaggcagaaccatggggcgcaggagcacatgtggcaatggcgaatctttatgccagcaagggacaatggcacgaggctgcacaagaacggcatatgatgaagcagaaaggggttgtgaaaggggcaggctggtcatcaatcacggttggaggggagggcaggagagtaggggtgtttgtggccagtgatcgcacacatccccaggacagtgcaatctacaggatgcttgagttgatatatttcggaactggaatggctcgctatgtacctgatcagttggatttaggatctgaagtggatatgatgattagcagttaactgaataagaagcattggctacgaatgagtgctatgatgagcatttgttgccagtcagtgcagcttaggatggtctggtcatccaatcatttctgctactgcactaaagcactgattgaatagttcatataccaatgctaagctcgtttgagagacaactctcgataagatgggcacaactatgaggcaaccatgctgcatgctctgatccaggcttcagcattgcagcttgtagtagcagacatgccttttttttttcttttaagataatggatagaaatccagcctctatatccacaagtggatatacacagccagtagcagacatgtcttacaagaatggatttcaattcaatgagatacccactgcaggtttcatatcctaaatcgtaaatatgtcaacttgattcctgcatcagatgtacagtgaagaactgaagaagttcatttcttgctcttaaccaatacaagttggaagcattttatgcacactgatttggagcagacaggaatgtggcagaccgcgtgatgttgatcttattcatcagttctttagaagggagccggacggcagtagagatattcatagcagcattgacgctttggtggcacccaagttgcatcaatatgtctgacatgctgcttgctaataacttgattcttgaccaagatattattgcttggtgtcttggtgatgattcttcttttatatacaatgttaatgtcaatccttgtactatagtagagttgttagtaccatattctttctgacaactgctcctaggatattcttccttttgacattttgattatgtaacggtgaatcatgtctatcagtatgtagacttttgaccttctttgtacatatgctcattatttactatcttttctgacaatttgcacttgcctgatctgattttggaataatttgcaattgcatgatgacaaagttatatgcttgttttcagtcatacagatgcttttagatggagtgcatacttgtgctgaatggtggttataaatcgaaccgaattgaacggatcatagatattcgtagctttcatggaatcggcagaacaagaattctaatttcagtggatctgtccttggacaaagcaggtgagtcccttccatgactcaaactgatcataaacaatcaagatagagcaccactacaccagtagaaagaaacacaaaaatcaccatgacagtgagggagttgtagtaatgatgctgctttggtgatggagcttaggctttggaacgctttaactaacttagcctactcaatgctcaatagccatttgctcttgcttagctttatccggttgtgacttcgaggtaccaaaccaaatagggtcctacttagaaccacaagtcattaatatgtctaaaaagaaccacgagtattattactctaatctccgcaatgatgggtttagggatgattgatcaacttctccaaaatgcactactggtaccagtaagaaaatcacaaatcaatgatcaagactaaagcaaagctatagtagctctcctcctaaccttctagagaaggcacctttcaattcctaagctccaatgctagtgaaaggggcctattactgacgtgttgagcccagaataaacgcctccaaaggcaagacagctcgaataaaccaagtataaagctgcatttctttctctctctctctctctccctcatctgaatttcaagtggtcagaagttgagaaccgggtattatcatcgaatcctggaacatttagctggtcgataattgcgtggcgatgcgaaagaacatggatgcagctgggaatcgcgaatctggaaccaattaagcatatgttttgcgtcgaggcaatgacaaggagaattaggaggataagatcgcctccatgggagcatttggaattggaaaggtgctttggggcaagtggttcagtaaagcggcgcaaataagagaagaagtgatgcttttagttgcggtatctgattctattcgctgttttggaaggtacatatccatttcttaacacggttctgggttgaatttgttgagctgatttcatgtgagcagcaaactgctggacaccacgtagcttgcagggcgaataattcaatgtgcttatatggaaaaagcagaataatctagatggatcagtatgtctgtcaatgagtcagttgctatttgtgtgtttctttgtggacacatgtcctacttgattatttatatgttcatttggttgtataaggcgcctgtagctcagtggatagagcgtctgtttcctaagcagaaggccgtaggttcgacccctacctggcgcgtgttttttgattttgagattttgattttgcttagaacctgaacatgaattcaggttgccctcaacttctcgtccctcgcttttaaccatgccatgttttcgttttcctcacaatctggttttgcttagaacctgaacatgaattcagaactaaaagttttttttattcagattttggttttgcttacaacctaaacatgaattcataactagtacctccgtttcagattataaaactttctagcatgttcctagattcattaacatctatatgaatgtggtcaatgctgaaaattcttataatataaaacggagggagtaaaatgttgtcctcaacttctcatccctcgcttttaaccatgccatgttttcgttttcctgacaatctggacatgaattcatgaaaactttgttaataatagtagacttgtcctatgaaaactttgtttttttacatgctacccctatgaaaacttgccatggttagaagaactactccacttatttttcccaacacttcacttgtcatatgaaaactccaccatagtccatatatgtttctgaatgtaagtataatactatatacgtccttggttagtaaaaacaataatagccaaaaatccaaaaggatataaaaaacgataaaacgattcatacttcgaaagagaggcagagactataatatttcaccacaatcctattcctatacaaaaccttaaacatcaatcagcaagctaattaaggttgtgttgattgtttaattaaaccttgcatagtactagccatatcacctggttgcccgacatgattagtgtaatccaacacaatcgtaatagttaatcattgccctcactattctaaagtagtactcctacgtgcactatgctagagcagcaaactatccgggagcttttgcagcctagagtcaaggccacggaaactgtgctttga</dnaseqindica>

External Link(s)

NCBI Gene:Os05g0581300, RefSeq:Os05g0581300