Os05g0307400

From RiceWiki
Revision as of 10:15, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os05g0307400| Description = Similar to Regulatory associated protein of mTOR (Raptor) (P150 target of rapamycin (TOR)-scaffold protein)| Version ...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Gene Name

Os05g0307400

Description

Similar to Regulatory associated protein of mTOR (Raptor) (P150 target of rapamycin (TOR)-scaffold protein)

Version

NM_001061691.1 GI:115463112 GeneID:4338371

Length

6980 bp

Definition

Oryza sativa Japonica Group Os05g0307400, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 5

Location

Chromosome 5:13917506..13924485

Sequence Coding Region

13917757..13917801,13917878..13917960,13918546..13918648,13920159..13920682,13920820..13921033
,13923343..13923602,13923915..13923999

Expression

GEO Profiles:Os05g0307400

Genome Context

<gbrowseImage1> name=NC_008398:13917506..13924485 source=RiceChromosome05 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008398:13917506..13924485 source=RiceChromosome05 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgaagaaaaaaagtgctcccacaccccttccgccggagaccgccaacacctcgcccgctcccatcggcgccaccgccggaatccgggttgagaactgctacgtcttcaagagccggctgcaagagtatgcgcagaaagccggcctccagactccagagtatcatacctccaaggagggaccttcccatgagcctgtcttcaagtccacagtggtgattaataacaccagctatggctccctgcccggattctccaacagaaaggctgcagaacagtctgctgctgaagttgccctcatggaaattgtcaagtccataccagccaacgcaaacatcccagctgttcaagagactgggctgtgcaagaatcttcttcaggagtatgcacagaagatgaattatgccattccatcttatatttgcaccaaaccagcctcaggcttggctcctttcttatgcactgtagagattggtggaatacaatatattggtgctgcagccagaacaaagaaagatgcagagataaaagctgcccgaactgctcttctggcaatccaaggtcaatcagagggttctgcaaatggtgcgacaaaatatatcgtagttcctggtaaaagggtaggtaaggaggtagaaaaaaggccaattgaaacccccaaaccacttaaagcaaagaaaggtggtttcaagaagaaatggaacaagaggaaattcatgaagaaggatggtcaagctgttgatgttgaaaaggatgaagctagagtggctggagatgctcatgattctgatgtcctaatgcagccaacggtaataacacaggaggcatcttgtggcactttgttcctgcaaccttgtgaggaagctaaaagagtagaagatgagccacctagagatattgaaatggtacaacctgataaggagaaccaacacagtgacgctgcattggtgcaacctgatgatgaagctagagtagaacaggagccatccagagatatttcagtggtgcaacctaatgaggaagctataagtgctaagcaggaaccatccatcgatgctgcaaccctgcaacctaaagaggaagctatgaaaactggctgtgtggcacttgtcttgtgtttaaacattagtgttgatccgccggatgtgatcaaaatctccccttgtgtaagaaaggagtgctggatagatccattttctatggcagctccaaaagcccttgaaactattgggaaaacattacactcacaatatgagcgctggcagccaaaggctcgttacaagcttcagctggatccgacattagaggaagtttag</cdnaseq>

Protein Sequence

<aaseq>MKKKSAPTPLPPETANTSPAPIGATAGIRVENCYVFKSRLQEYA QKAGLQTPEYHTSKEGPSHEPVFKSTVVINNTSYGSLPGFSNRKAAEQSAAEVALMEI VKSIPANANIPAVQETGLCKNLLQEYAQKMNYAIPSYICTKPASGLAPFLCTVEIGGI QYIGAAARTKKDAEIKAARTALLAIQGQSEGSANGATKYIVVPGKRVGKEVEKRPIET PKPLKAKKGGFKKKWNKRKFMKKDGQAVDVEKDEARVAGDAHDSDVLMQPTVITQEAS CGTLFLQPCEEAKRVEDEPPRDIEMVQPDKENQHSDAALVQPDDEARVEQEPSRDISV VQPNEEAISAKQEPSIDAATLQPKEEAMKTGCVALVLCLNISVDPPDVIKISPCVRKE CWIDPFSMAAPKALETIGKTLHSQYERWQPKARYKLQLDPTLEEV</aaseq>

Gene Sequence

<dnaseqindica>6685..6729#6526..6608#5838..5940#3804..4327#3453..3666#884..1143#487..571#aaaaaaaaaaaaaaaaaaaacactattctaaccctacctcctcccattggatccattcccgactcccgagtagcgaccgaggaggcgaggagcgacgcgccggcgccgtcgtcggtcgccctgccccccgccgccgcccgccgcccgcccggcgcatcccccgcgtccggcgcactcacgcgctaaccgccagcggccagccgggcgccgccgcgccggcagcagccagcagcgcgcccggccgcggcctcccctccagcagagcagcacggcagggcagcaggctcccactccagtccacacctccacggctccaccggccgacgaaggtaactcttcccttcatggctaatacaggatttaattcatagttgaatctagcctgtaggatattgttcgtggttgaatatttttgatttacaatttgaatccaggaatgattcagggttgaatatatagtatattgttgttttgtaggtttgaaacatgaagaaaaaaagtgctcccacaccccttccgccggagaccgccaacacctcgcccgctcccatcggcgccaccgccggaatccgtatgtttctctctccccttttctcccctcccgccctctcactctcaggactcttctttggtctgaacaagaaccatggactgttcattccagcgcgctaaccacaggttttggttcctctccactttttaaatggagattgcttaacgtatttactttactggagagcattcaccatcatacatgatgcattgatgcgcctgggatatagctaattactacttctactacatttgttgccaaaacattacttgcattatgccatcttggtaatgctattttctgagttatggtttgcttgatttggcccaggggttgagaactgctacgtcttcaagagccggctgcaagagtatgcgcagaaagccggcctccagactccagagtatcatacctccaaggagggaccttcccatgagcctgtcttcaagtccacagtggtgattaataacaccagctatggctccctgcccggattctccaacagaaaggctgcagaacagtctgctgctgaagttgccctcatggaaattgtcaagtccataccagccaacgcaaacatcccagctgttgtaagtcactctctgctctacttgtgttctcttttgtttaactctcaacacgatggaatacctggggcctgtgggacctgctagtgtagtacaagataagtaaaagtgttgggatattcaacttatttcaataaaatccctgcttttcaatttgcgcgaatctgaagaatgagatagtcactcagctgattactccagaacgaatcagggctttcgagtttggatagagttaggtcctagagagcaagaagaggctggtattttcatagaagggattgtgaaagctttgatgtcagtcagcacggtcttattgttgtctaccatcatgatttgtttgtatcttttcaagctcataattctactaaagtattgtatgaatatgaccagaaattggttgttaaagagcttccaaactcaatcttcccccgtttgagaaccatgaacaattcaaacatcaaagtacacgtattaagttttgtagtcctttccaaggccaagacttagataaattggatgcgcttttagttttgagtcctttggaaatagcctgattgagaaacgcccaggggtcttctggctaactccacaaagtggtgggctagccggcctgggttcgaagcctcaccccttctatttatttgatattaggtccttccctaatattcacgtttttgaattagcctgactaaattagcaaagtgttataatctcttacctggatttctatgttcttaatgcatcttaatatgttttccagcaagagactggcttgtgcaacataggaagtcagcaactaaaccagagggaaatgcaccgagaagctgaccaccaccactgccttctggcaacccttgcacgtcaccgccgtcttgctgccgctgccaccctcttctcctccactctccgcactgctcgcgccctcaactccctcctcgctgctatctgctcttccccggcgttcctccgcttcgcccccaaagtcctcctgcttgctgccccgtcagtctcccctaacgccaccagcttccacatcctcacctccacgctctgccaggcccaccgccccaccgccgccgccgacctcctttgctgcatgccctcgcttctacttgaccctgacccggccagttgtcgtgctgtcctttcctccctgtgccagtatgcttccgctcaggatgcagtagcattcttggacaagatgtgccattggggcatttccccaagcagatctgactaccacgccgtcttcgacgcacttctgcaggagggaaaggtagcggaggcatatgaggtcatgaagaataagatgggatctaacggtgtggcacctgcacttgcgtacttcaagttaataatgcaagctttcagtgagaccccggagttcgattctgtggaggaggggttcgatgaaatgctcctgagagggctggtgccggacgtggatgtgtacaatgtgtacatcagtgcgctatgcaggaaaggtgaccttgctggagcacggcggatgatgacctgcatggagcacgccgggtgcccaccggatataaggacatttggcgtggtagtctccgggtgcatgtctgctggggacatgggcacagtgagggagttggtgcaggaggcaataaggcgtggcctgcggtgggatccaacggcattgtcggagctgataggcctgcggcaggcaggtggtggtgccacacaggcacatgagttactgttggagccactatttgtgcacgatgcactagtgttggggcagctgattggagcattgtgcaagcaagggctattgggacctgctgctgtaatagataattattagaaagcattggaatggtctttttgtttcatacagttattggtcttgaattctcggaaatctgaagaacggcataagaatcataaaaacagagacagaaaaggcaaaccatggactataactccaggaatacttggagctttcgggtttgtagatcactagattgttggctatagttaggacccagtgagcaagaagggagcgtatttgtatagatgggccaggtaggaggagattgcagacagtctttattgttgtcttctgtcatgatttatttgtattttctcaagctcacaactctactaagttattcccatgaatacaataggaaattagtcgtttaatagctactgaactcatactgccaggctttagataattcggatgttctttagtccttaggaatcaggctgactaaaattagcagtgttattatctctttcctggatcactgtgcatttttttacacatattaatatgttttcagcaagagactgggctgtgcaagaatcttcttcaggagtatgcacagaagatgaattatgccattccatcttatatttgcaccaaaccagcctcaggcttggctcctttcttatgcactgtagagattggtggaatacaatatattggtgctgcagccagaacaaagaaagatgcagagataaaagctgcccgaactgctcttctggcaatccaaggtattgtgctgttcttcttcaagggtcttttttttttaatcttatccaggctattcactgttgaaattaatattgctatgttcttttttgtgtgttatggtgaacattgggtcatgcatgggcattgcttggtgcaggtcaatcagagggttctgcaaatggtgcgacaaaatatatcgtagttcctggtaaaagggtaggtaaggaggtagaaaaaaggccaattgaaacccccaaaccacttaaagcaaagaaaggtggtttcaagaagaaatggaacaagaggaaattcatgaagaaggatggtcaagctgttgatgttgaaaaggatgaagctagagtggctggagatgctcatgattctgatgtcctaatgcagccaacggtaataacacaggaggcatcttgtggcactttgttcctgcaaccttgtgaggaagctaaaagagtagaagatgagccacctagagatattgaaatggtacaacctgataaggagaaccaacacagtgacgctgcattggtgcaacctgatgatgaagctagagtagaacaggagccatccagagatatttcagtggtgcaacctaatgaggaagctataagtgctaagcaggaaccatccatcgatgctgcaaccctgcaacctaaagaggaagctgtaagtgtaaagccagaaggttttagtttatcaacacctgaggtagcctgaacaaatagaacatgaaaattaggggcagctattgattgggttaagagggtggcgtactagtaaatatcttttatccattttgttccacatattattgttactaatttgattgattatgacgacactttcagttgtaattggggttctcaagtcatgcaatggttgatgttaccttatctagtagtgctatgtaagcaggacactcaactttatcaacgaggggctcaggtgcggggctaaaaaatgcgtcattttattgaatttatcatatgttaatctatacagatggggcatagtagtagtgttgctatgttgttgcaccattttgctgcatggttaaaagcagcatggcgatccccgactctcgtatatgcatgtttcagataacaagtccatctcatctttcttatcagagccagcctgttgttgggatggtccttgaatctttaatctagtagggtggatttatccatgtgacagtatttgctaattactgattggcagtttggcaccatgttggcagagagacttagtttcaggcgagtttggctcagaagttaatagaaagagaaacatagtttcaggagtttggcagcgaagttaatagaaagagaaaatatagtttcagccgaggttggcgggcaagttgatatgtgaaaatggtgagtgggggcaatggacaaaaccagcattacggtagtatagtcataatattacagtttttggttatccaaggtaatgctatcattataggcatatcagatttccacccacatgttgctctagcatgtgagcatgcggtagtttaagggctgtaattctgcaatggaattatgatgatggatgggaagcagtgcatactggaaacaaatgacaattaggaaccttgagaccccatctgggatagttttgtgagttgtaattgctttcgggcaaaacaaatcacttgtacaatgcagatgtttggctgccccatatatccttttggacatcgtggaaatgcttggttccaacaatagaacactcatgttgaataaactatttctttcctctttaggtgactgatgtccctagtgggatttgcatcttattttttatttttatttatctagggtggaccattgtgttgaactttagtaaaccagtttgtggcatgtgcttcataaaaaaaaagagaatattctaaattaatatgacatgatggagagcccatgtaccaattaattgttccatggttgtggtcagttttatctagaagtagcagatcagcaaatagctttgcttttcagatgactgtctacgttggtcagaaatctgtcccaataccttttcttttcttctggatgcttcttttggatattctatacttctatttgtatttctattctttttattttctggtgtactgttggatgttattgcttttatgctatttactaatagtgttttggtagtgcagatgaaaactggctgtgtggcacttgtcttgtgtttaaacattagtgttgatccgccggatgtgatcaaaatctccccttgtgtaagaaaggagtgctggataggtaaacatttggtcatatgtatatgcttgaattttagtcagctgaaaaatatacgtctgcctgcagttgacagttttatttcatgtttatgggatgcaactccagtattgttgtatttcttatctccacatgcaaatgttagttagaactcatttaagctatatcttttgttgactgctctaaatgccaaacaagggtgattattttgtaatcagaggttattgcagcaaagactggtctgacacatgctattctgtaaaattactgttaattttctgtttgattataaccaaatgagtattaatttttctgtgttctgtagttgattatatgcatataaaaacgttgatctgtgaaagcttgaggattggttgaggattaaaatttttgggtctgctttataagatgctgtacctttaagttgtggaggatagggacttgatcaataaaatttattatttgttgattgttctagagtgagaaagcttatctaaaataaacatggtgattcatctttgtgctcctaatgcatttgtacagttgctttgagtttttctcatagctctttcatttatttatcttcagatccattttctatggcagctccaaaagcccttgaaactattgggaaaacattacactcacaatatgagcgctggcagccaaaggtgaggcacttcttttgctgtttatagactttattatgatgacattacttacgtcatgcccgaatgatgcttgcaggctcgttacaagcttcagctggatccgacattagaggaagtttagaagctgtgtaatacttgccgtaaatttgcttgaacagagagagtcctttttaattacaatggtcatggtgtaccaaagcctacagctaaaggggagatttgggtatttaacaaggtgaatgttgcaaagacactgcataagctgctgcattgtttatccttgtgtgtttttgacgaagtgccctttttactttttggtccagagtgatagtactagatagttgaagttgaaagtgataatgatgatttcct</dnaseqindica>

External Link(s)

NCBI Gene:Os05g0307400, RefSeq:Os05g0307400