Os06g0125000

From RiceWiki
Revision as of 20:16, 22 July 2012 by 124.16.129.48 (talk)
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Function

Please input function information here.

Expression

Please input expression information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this gene

Please input related labs here.

References

Please input cited references here.

Structured Information

Gene Name

Os06g0125000

Description

Similar to NBS-LRR disease resistance protein homologue

Version

NM_001063182.1 GI:115466095 GeneID:4339959

Length

3904 bp

Definition

Oryza sativa Japonica Group Os06g0125000, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 6

Location

Chromosome 6:1346281..1350184

Sequence Coding Region

1346281..1349188,1350069..1350184

Expression

GEO Profiles:Os06g0125000

Genome Context

<gbrowseImage1> name=NC_008399:1346281..1350184 source=RiceChromosome06 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008399:1346281..1350184 source=RiceChromosome06 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggcggagacggcgctgagcatggcgaggtccatgctggggggcgccatcagcgcggcttcggcggccgccggcgaagagatgagcttgctcatgggtgtgcagaaggagatatggttcatgaatgatgagctaaaaacaatgcaagcgttcctaatagctgctgaaacaatgaagaagaaggacctgctgttgaaggtgtgggctgagcaagtaaggagcttgtcctacgacattgaagattgtcttgaagagtttatggtccatgtcggaaaccaaagcctcttgcagcaattgacaaatctcaaagatcgccaccgaatagctgtcaagattcgcaacctcaaatcaagacttgaagaagtgagcagcagaaacacacgttacaactcgatcaagatggaggcgaacaacaccttcgatgagatcgagtccatggaggatgttcggaatcattctcgtagcaacatcgacgaagcaaagcttgtaggctttgacacccccaaaaaggagttacttgacaagataaacatggatgccaatgatgatgaccactgtcgggtgctttgtgtggttggcatgggaggattgggtaagactactctggtaaggaagatctttgaaagtaaggaagacatcataaataattttccacatcgtgcttggatcgttgtgtcacagtcattttcgatgatagagatgctcaaagatatgattagccaacttctaggtcatgaatcattgaaaagatttgaagggaagccgatccgagcacacgaccttggtacgcacctacgagatggactgaaagaattgaggtactttgttgtttttgatgacttgtggaacacagatcactgggaatggattagggaatttgctttgcctagtaaaaacaacaaaaggagtcgggtgattgtaacaaccagattagatggagtagctaatgcatgcaccactgaaccatttgtctaccgccttaagctcctagagacggaatgtgccatagatttgctactaaggaagatgggggaaagtaaagaagatatgaagaatgataacaacctgaagagcatagttacacaattagtaaaaaagtgtggttgtttaccactagccatagtaacgataggagcaatgtttgctaataaaccttcgtcgaagtgggaagaaatgtgcagacaacttccttcagagcttgagaacaacccaagccctggagtcgaagcaataaggagggtggtgaccctaagctatggccatttgccatctcatcttaaaccatgctatctatatctaagcatttttcctgaggatattgaaattaaaaggaggcatttggtaaacagatgggtagcggaggggttggttagagctagagttggaatgaccattagtgatgtcggagaaagctactttgatgagctaattagccgaagtatgattcaaccatcaagggtgaatatggaaggacatgttaagagctgccgggtccatgatataatgcgtgatattatagtctcaatttctaaagaggagaattttgtttactcaacaggagataatgtatctacagtaatagtggagaagttccgtcatctgtcatgccatggcggcaactacccaatagttggaatggatttcagtcgtgtccgatcgttaactgtatttggtgagtttgatcagagacccatgttggtgggctcttcaatttgttcagctcaattcacgatgctaagagtcttggatctagagaatgcagtattttcagtgacacaaaaagacataaacaaaattgggttgttgcggcacttgagatatttgaatacgcatactagaagacggtccactatttatgcacttccaagctctatcgggaaattacagaacttacaagttttggacataagagagagtgaaatttctacactaccaactgatatcagtaagctccttatgcttcgtatcctccgttgtagcaagggaccgtggtacttctacttctattttgatccagatgaaccaataaaatgcttgaagcatacgttgcgcatgcccttgatgttgacaccattagttggttctgcagcacgcaattatactattgctgagctacacagggcctactctagccattggtcagagacaccaggcgtgagggttccaacaggaatcagcaaactaaaggagttgcaggtcttagaggttgtagaccttaaactaactaaaagcaaagcaattgaagagctgggtgaacttcgctggctacaaaaattacgggtgtcaacaaagggggcccaggacaagaagcgcaagacactttgtgaagccatcgagaagctatcatccctccaatctctctgtgtttatgagggttactacttcataactgggacacttgagtggctgggtccttgcaatttctcccctcctcccctgctgagaaagctagagttgcatggacgtattcgcgtgatgcccgactcttttaggaaccttaagcagctgcggaagatttttttgcggctaagcgaactagatggtagagccatagagatacttggaacactacccaacctcatgctcctgaatctcgatggcagagcatatgttgggaatgaattagcattcaaaaagcacgagttcccaaatctcaaggagcttcgtatcagtatgctgtccgaactaagagggataagatttgagaaggacgccttgccccacatggaaagaatggaaatcgaatgttgccagttgagatcagggattgttggcatcaagcacctcgaacagctcaacgagatttcacttgggtgtgatgtggcggggcttgatctgctggaacaggaagtaaaggcgcaccccaagacacccgcattgcggctgcttcaagaccgaagcaaaatcgacttggggctccctgtagtcctgacgaaagacgaaggctccaatgttgaagaggaagcaaaggaatccgtccatgacgatgccggggagagctcgcaagtgatctcatcaccgtga</cdnaseq>

Protein Sequence

<aaseq>MAETALSMARSMLGGAISAASAAAGEEMSLLMGVQKEIWFMNDE LKTMQAFLIAAETMKKKDLLLKVWAEQVRSLSYDIEDCLEEFMVHVGNQSLLQQLTNL KDRHRIAVKIRNLKSRLEEVSSRNTRYNSIKMEANNTFDEIESMEDVRNHSRSNIDEA KLVGFDTPKKELLDKINMDANDDDHCRVLCVVGMGGLGKTTLVRKIFESKEDIINNFP HRAWIVVSQSFSMIEMLKDMISQLLGHESLKRFEGKPIRAHDLGTHLRDGLKELRYFV VFDDLWNTDHWEWIREFALPSKNNKRSRVIVTTRLDGVANACTTEPFVYRLKLLETEC AIDLLLRKMGESKEDMKNDNNLKSIVTQLVKKCGCLPLAIVTIGAMFANKPSSKWEEM CRQLPSELENNPSPGVEAIRRVVTLSYGHLPSHLKPCYLYLSIFPEDIEIKRRHLVNR WVAEGLVRARVGMTISDVGESYFDELISRSMIQPSRVNMEGHVKSCRVHDIMRDIIVS ISKEENFVYSTGDNVSTVIVEKFRHLSCHGGNYPIVGMDFSRVRSLTVFGEFDQRPML VGSSICSAQFTMLRVLDLENAVFSVTQKDINKIGLLRHLRYLNTHTRRRSTIYALPSS IGKLQNLQVLDIRESEISTLPTDISKLLMLRILRCSKGPWYFYFYFDPDEPIKCLKHT LRMPLMLTPLVGSAARNYTIAELHRAYSSHWSETPGVRVPTGISKLKELQVLEVVDLK LTKSKAIEELGELRWLQKLRVSTKGAQDKKRKTLCEAIEKLSSLQSLCVYEGYYFITG TLEWLGPCNFSPPPLLRKLELHGRIRVMPDSFRNLKQLRKIFLRLSELDGRAIEILGT LPNLMLLNLDGRAYVGNELAFKKHEFPNLKELRISMLSELRGIRFEKDALPHMERMEI ECCQLRSGIVGIKHLEQLNEISLGCDVAGLDLLEQEVKAHPKTPALRLLQDRSKIDLG LPVVLTKDEGSNVEEEAKESVHDDAGESSQVISSP</aaseq>

Gene Sequence

<dnaseqindica>997..3904#1..116#atggcggagacggcgctgagcatggcgaggtccatgctggggggcgccatcagcgcggcttcggcggccgccggcgaagagatgagcttgctcatgggtgtgcagaaggagatatggtgagtgcgtgtgtactgtgtccccatttgattagtactggtttcttacttccttctgtttaattagttcccttaaagaaagaggcgtttcaaagaaagctaattgcatggttattctcgaacagcgatatttcgttcttgctgaccatgcagtgacggagctgcttttcgagtctgggataaacttaaatttattacagtttgctacaagatttttaattttaattaattctttttttttaaaaaaaaataaatcaatcatgtatttgacggtgagcctaggcgatggctctgccccttttacatgtgaatttggacatgtataaagtacagatattgatccatttattgatctatttaaaacctaacgcatcatataatgtgaaaatgcatggggaaagtataatatttcatttatcactgtgatcaaatccatctctccgcaaaaaaaaaagataattaattcatcagatttcatccgtgagcaatccatttagatctcattctactttatttgttataattaaagagatgtgatatgagtccacatggtaagggtatcaatgggaaatatactccctgatgtacatggcatgttttgtcatctccgttgtcattgctccatgatttgagaaaattcgtttgaagtttgtactcttaaaatttcaaacatcatctttttgagatatttttacatgcatatataggacctaggcatgtagaggtagaaaaatacgctgagtcacaatacctttaataattcttctaatctgaattaataaaacaagaatttagacttccagagcaaaatcagttattcggaattccatatactcaagagtgctaaattttgttttaccactgtttttttttttggcaggttcatgaatgatgagctaaaaacaatgcaagcgttcctaatagctgctgaaacaatgaagaagaaggacctgctgttgaaggtgtgggctgagcaagtaaggagcttgtcctacgacattgaagattgtcttgaagagtttatggtccatgtcggaaaccaaagcctcttgcagcaattgacaaatctcaaagatcgccaccgaatagctgtcaagattcgcaacctcaaatcaagacttgaagaagtgagcagcagaaacacacgttacaactcgatcaagatggaggcgaacaacaccttcgatgagatcgagtccatggaggatgttcggaatcattctcgtagcaacatcgacgaagcaaagcttgtaggctttgacacccccaaaaaggagttacttgacaagataaacatggatgccaatgatgatgaccactgtcgggtgctttgtgtggttggcatgggaggattgggtaagactactctggtaaggaagatctttgaaagtaaggaagacatcataaataattttccacatcgtgcttggatcgttgtgtcacagtcattttcgatgatagagatgctcaaagatatgattagccaacttctaggtcatgaatcattgaaaagatttgaagggaagccgatccgagcacacgaccttggtacgcacctacgagatggactgaaagaattgaggtactttgttgtttttgatgacttgtggaacacagatcactgggaatggattagggaatttgctttgcctagtaaaaacaacaaaaggagtcgggtgattgtaacaaccagattagatggagtagctaatgcatgcaccactgaaccatttgtctaccgccttaagctcctagagacggaatgtgccatagatttgctactaaggaagatgggggaaagtaaagaagatatgaagaatgataacaacctgaagagcatagttacacaattagtaaaaaagtgtggttgtttaccactagccatagtaacgataggagcaatgtttgctaataaaccttcgtcgaagtgggaagaaatgtgcagacaacttccttcagagcttgagaacaacccaagccctggagtcgaagcaataaggagggtggtgaccctaagctatggccatttgccatctcatcttaaaccatgctatctatatctaagcatttttcctgaggatattgaaattaaaaggaggcatttggtaaacagatgggtagcggaggggttggttagagctagagttggaatgaccattagtgatgtcggagaaagctactttgatgagctaattagccgaagtatgattcaaccatcaagggtgaatatggaaggacatgttaagagctgccgggtccatgatataatgcgtgatattatagtctcaatttctaaagaggagaattttgtttactcaacaggagataatgtatctacagtaatagtggagaagttccgtcatctgtcatgccatggcggcaactacccaatagttggaatggatttcagtcgtgtccgatcgttaactgtatttggtgagtttgatcagagacccatgttggtgggctcttcaatttgttcagctcaattcacgatgctaagagtcttggatctagagaatgcagtattttcagtgacacaaaaagacataaacaaaattgggttgttgcggcacttgagatatttgaatacgcatactagaagacggtccactatttatgcacttccaagctctatcgggaaattacagaacttacaagttttggacataagagagagtgaaatttctacactaccaactgatatcagtaagctccttatgcttcgtatcctccgttgtagcaagggaccgtggtacttctacttctattttgatccagatgaaccaataaaatgcttgaagcatacgttgcgcatgcccttgatgttgacaccattagttggttctgcagcacgcaattatactattgctgagctacacagggcctactctagccattggtcagagacaccaggcgtgagggttccaacaggaatcagcaaactaaaggagttgcaggtcttagaggttgtagaccttaaactaactaaaagcaaagcaattgaagagctgggtgaacttcgctggctacaaaaattacgggtgtcaacaaagggggcccaggacaagaagcgcaagacactttgtgaagccatcgagaagctatcatccctccaatctctctgtgtttatgagggttactacttcataactgggacacttgagtggctgggtccttgcaatttctcccctcctcccctgctgagaaagctagagttgcatggacgtattcgcgtgatgcccgactcttttaggaaccttaagcagctgcggaagatttttttgcggctaagcgaactagatggtagagccatagagatacttggaacactacccaacctcatgctcctgaatctcgatggcagagcatatgttgggaatgaattagcattcaaaaagcacgagttcccaaatctcaaggagcttcgtatcagtatgctgtccgaactaagagggataagatttgagaaggacgccttgccccacatggaaagaatggaaatcgaatgttgccagttgagatcagggattgttggcatcaagcacctcgaacagctcaacgagatttcacttgggtgtgatgtggcggggcttgatctgctggaacaggaagtaaaggcgcaccccaagacacccgcattgcggctgcttcaagaccgaagcaaaatcgacttggggctccctgtagtcctgacgaaagacgaaggctccaatgttgaagaggaagcaaaggaatccgtccatgacgatgccggggagagctcgcaagtgatctcatcaccgtga</dnaseqindica>

External Link(s)

NCBI Gene:Os06g0125000, RefSeq:Os06g0125000