Os09g0538800

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Revision as of 07:33, 21 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os09g0538800| Description = Similar to Synaptotagmin C| Version = NM_001070335.1 GI:115480412 GeneID:4347715| Length = 9597 bp| Definition = Or...")
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Gene Name

Os09g0538800

Description

Similar to Synaptotagmin C

Version

NM_001070335.1 GI:115480412 GeneID:4347715

Length

9597 bp

Definition

Oryza sativa Japonica Group Os09g0538800, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 9

Location

Chromosome 9:22044982..22054578

Sequence Coding Region

22045271..22045399,22045505..22045636,22045753..22046106,22046196..22046442,22046524..22046600
,22047006..22047080,22047153..22047254,22047364..22047482,22047896..22048019
,22048116..22048166,22048282..22048380,22048874..22048984

Expression

GEO Profiles:Os09g0538800

Genome Context

<gbrowseImage1> name=NC_008402:22044982..22054578 source=RiceChromosome09 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008402:22044982..22054578 source=RiceChromosome09 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgggtgtgattagtacggtgcttggtttctctgggtttggctttggattctccgctggtattgtcatcggatactacttcttcatctacttccagccaactgatgtcaaggacgtcaaagttcgcccacttgtcgaatatgactcaatatcgttggacggtatccttcctgaaattcctttgtgggtcaagaatcctgactatgatagaattgattggctgaatagatttttggagatgatgtggccttacctcaacaaggcgatctgcagaactgcactggatattgcaaagccaatcattgaagagaacaggaagacgtataaactagaatctattgagtttgaatcacttacattgggtagcttaccacccacctttcaaggaatgaaagtgtatgtcacagaagaacaagaattgataatggaaccatctcttaagtgggctgcaaatcccaatgtcactgttgttgtaaaggcttatgggttgaaagcaactgtccagattgtggatctgcaagtctttgcttcacctcgtattactctgaagccattggtccctacatttccttgcttcgcaaaaatccttgtttctctcatggagaagccacacgttgacttcgggctgaaacttttcggagcagatttaatggctatccctggtctttacagatttgttcaggagaccataaaaaagcaagttgcgagcatgtatttgtggccaaagacattggaagttcccataatggatccctcaaaagcttctaagaagcctgttggaattctacttgtgaaagttttaagagctcaaaacctgcgaaagaaggatctgttgggtaaatcggacccatatgtgaaacttaagatgtcagatgacaagcttccgtccaagaaaacaacagtgaagcgtagcaatctcaatccagagtggaatgaggatttcaaatttgttgtgacagaccctgaaactcaggcactggaaattaatgtctttgattgggaacaggttggcaagcatgagaaaatgggcatgaacaacattctgttgaaagaacttcccgcagatgagactaaagtcatgactgttaacttgcttaagacgatggatcctaatgatgtacaaaatgagaagtcccgtggtcagcttactctggaggtgacatataagcctttcaaggaagaggatatggagaaagaaggcatcgataatgctgatgtggtggagaaagctcctgatggtactccagctggtggaggactgctttatgttgttgttcatgaagctcaagatcttgaaggaaagcatcacacaaacccatatgcaaagataattttcaaaggagaagagaagaaaacaaaggtaatcaagaaaaacagggatccacggtgggaggacgaattcgagtttgtatgcgaggaaccccctgtaaatgataaactgcatattgaagttctaagtaaagcttcaaagaaaggattgatacacggcaaggaaaccttaggctacattgatataagcctcgcagatgtgatcagcaacaagcggatcaatgagaagtaccacctcattgattccaaaaatggtcagattcagatagagatgcagtggagaacttcatag</cdnaseq>

Protein Sequence

<aaseq>MGVISTVLGFSGFGFGFSAGIVIGYYFFIYFQPTDVKDVKVRPL VEYDSISLDGILPEIPLWVKNPDYDRIDWLNRFLEMMWPYLNKAICRTALDIAKPIIE ENRKTYKLESIEFESLTLGSLPPTFQGMKVYVTEEQELIMEPSLKWAANPNVTVVVKA YGLKATVQIVDLQVFASPRITLKPLVPTFPCFAKILVSLMEKPHVDFGLKLFGADLMA IPGLYRFVQETIKKQVASMYLWPKTLEVPIMDPSKASKKPVGILLVKVLRAQNLRKKD LLGKSDPYVKLKMSDDKLPSKKTTVKRSNLNPEWNEDFKFVVTDPETQALEINVFDWE QVGKHEKMGMNNILLKELPADETKVMTVNLLKTMDPNDVQNEKSRGQLTLEVTYKPFK EEDMEKEGIDNADVVEKAPDGTPAGGGLLYVVVHEAQDLEGKHHTNPYAKIIFKGEEK KTKVIKKNRDPRWEDEFEFVCEEPPVNDKLHIEVLSKASKKGLIHGKETLGYIDISLA DVISNKRINEKYHLIDSKNGQIQIEMQWRTS</aaseq>

Gene Sequence

<dnaseqindica>9180..9308#8943..9074#8473..8826#8137..8383#7979..8055#7499..7573#7325..7426#7097..7215#6560..6683#6413..6463#6199..6297#5595..5705#acttttctcagcacgtagtggtcggccgagagcctcgtcgaagagggcgctgccgccatcccgttcccggcgaccgccgccgccgcaggccagtagtcgttgagcagcatcttgatgccgtccaccagttgcattgcacccacgagcggcgcctgctgctgcacggctatcagctcggcgtcgctgaacaccttgcggcaagcggccgttgacctcgacgccgccaccgccgccgccgccgccgcacgtgctctctctgcagtctgcgctgcgtcagctctcgccgcgcgtcggctctccggcatcgaccctgccaaatccttccttctgctcgctccccaaggtacacccgttgcggctttctccgttctgcttgctgctcggctgcaccgcaaataggagcatttcacttcttctcttacttagaaagaaccaaacaatcaatatgcgaatcacatgctcactgatctctccgctaaatcaacacacacatatcaaagattttcaccatcggttgctatgctcctcccatcagattggatttgcatatgtttgtttcttgctgacactgtggcgccaccgcgccgccgacagcgcccctggaccctggtgagagagagaaagagcgagggggatctgagagtgggagtcgccgacagcgccgctcctccccggccgcccgcacgctgcttctctaccggccgcgcgccaccccttccccgcagcccgtctgcagctcctcccctcgctgccgcctcgtgggcggctgccggcgggtgagcccgcgcgccgtccctccccggccgcccgcccgcagctcctcccccaccgccgccgcgtcgccagtagccgccatcaccgccgtcgcgtcgccagtcgccggctgccgacgccctcctctcccgtcccgcctcgcactacggcctcgcagaggatggagagagagatgaggaagggagaggggagaggaaaagggagataatgatgatgtggccacgctgacatgtgggtccatatgagtttcacgctactcagcgccacgtcggacaaaaccgaaatcaaaaccaccaaaaaaaaatctcaaacgaaaccgttcggtttagttagttgagggacgttgtggttgggggacaattttgtaacccgatgacaagttaagttgaggtatcttcggtgtactttttcctttattagtagatcctgttcgaatccgacgtttgctttcacgagagaatgggcctgaaggaaggggagcaaggtcgttgtcgaacaattcgagggcctatccaatccgacgcaacgctgccgacacaggacagcttcaaaggtgtctgcagtctgcatgattatacacccccagtatgcgccattccaccgaggagatagcgagatgcattttgtcctgaaaacgaactatggcctgatggagacatacactgttcttaccacacacaagtattatatgagttccgaggaaattacgcatatcaagcagaattttggccctttctgcgtcaaggagagtagcgagtttttttctggctgggaaacgtctcacgacttggagcatccacgtcgtctttgctctgttgcacgacgcgacacgaccgatcaatccgttgtctgcatttggatcatgaaaataacgccctgatttgactggtcgggtgatgaaccggtggtacgtgcgtggctgctactgacctggttgctaggccatgcaaatgcctccgattttctgctgtcgaaattttaatttaaaattgtcgagagtagtttatttttcagtttaaaattgcttaggtataaatataaagttttccttagaaattagtttttattactaataaggtatttttacggcttatcagcttaaggccgccaaactaatggccaaaatgaaatgcagagacatgctctttatttgttcgttgccatttggcaacctcgcatgtaaccaaaattgatggtctacttgtttcaaaaaaattgatggtctacgtgaaaagcagattaagaaaacagatagataggaaaagcatacttcttccattttataatatacggagtaatagcctagcactagataaaatatatcatactacgaaactaaatagacttgctatctagattcattatactaatatatatcccatccaatactaatctttctctttcataaaaaaccaatcaaatacacagtgtggcatattctacttgaatatcgacaacctcatgtccacgtagtagtactatgatgtgtcacattatgtcctgattagtattttatagaacgaaagaattagacttttatattttgagacatgtgtactatgattttaatagaaatataagggtaaacagagaaccgcaaaaaaaaaaaacaagaatcaccgtttgaacggatcataggaaaaacacaagaaattgaaagaaaacaacttcgatggaaaaaaacatcaaatcaagttgtaaaattctgtagcgtcttataagctacatagaaatcgagaagagcatataactttagaccctgtttagatgggactaaaactttaagtccttatcacatcggatgtttggacactaattataaatattgaatgtagactattaataaaacccatccataatcttggactaattcgcgagacgaatctgttgagcctaattaatccataattagcctatgtgatgctacagtaaacattatctaattatggattaattaggcttaaaaaattgtctcgcgaattagctttgatttatgtaattagttttgtaagtagtctatatttaatattctaaattagtgtctaaatacagggactaaagttaaagttaagtgtctggatccaaacaccaccttagatagaaggaaaaaaacccatgtatagaatgtctcttcatacagactctatataaactaaaaaaaattggaataatctaatccgatgacacacgggaaaaaccctgagggcatgtacaaaggtagagtctaatatgagctctctatactaattaatatcactaaagacaatcctcctataatagtagaggtaataagatttctaaaccattaatgtatcaaataattttttattatacttatttccttttctccaccctcatgcaacaaattttccattatgctaagagtccactctgagctgttatcatgcgtagcaacgatatttctcatttcttccatctctttcttccacgtcaccaaatttacttgcataacagtgaagagagcccattattacataccattgtacatgcactgatggaatcatacatataaaaagaagaaaccatgactgtccattacctaaaaacgaggtaagatgcctgtttgttttcctctaaaatttctataagtggaggagattaatttcagaactaatataaattctggagggtgggattatccgaacacggttcatttcactttcagaactaatataaatcctcgagggagggattaaccgatggttcatttcacgggattttcaatgaaaatttcgaggaccaatcatttgctgcgaataactacatcggaattttatgattcaaatcctaaaaaaaaatcctttccctttcatacgttcgaaaggatcctttttaaaacacttcacgcaaatttcgctgatttttggtactgcacgacacaagacaagaaaaggtttgaactacaaaagttggggggggggggggggggcagatgagccagggaggaccatgaccatccccggtccccacacgtcggcgtccccgagatcactcatccgactccaccacagttcacacttcacacccatccagcagcaggcaggagaggagaggagaggaaacaaatcaaactcgcttcgcttctttaattaggcactcgtctccctcctccctcttccaccccccccccccccccccccccacacacacacaccttggatcgcggcctcacgcgcgtgaggcgccgcaacgcaacgtgcgaccccgacctctcctcctccacctcggcttccccccaaattccatctcctcgcctcggcgaatccgattccgagcactcacaaccggatcggagcgagttccatggcctgaatctcagggggggtgactggccgaggagcgggctctctctctcactggttcgtctcctcctcttcctcttccccgactgctcggatcggtcgtcgttctcgcgttggggggcgatctaggtttttgttcgttgcctggatttttgggctgttgtaggattggatgggagtttttgatttttgttgggtgttttctcgtctgtccggttgcggctaaagttggattcgtctagggttttttttttcccactgtaggatcgattttgaatttttgatccgtgcaatcgtaggggcggattgggttcaccatttttggggtacattttcgtgcgacttttttttatttgctggcgattaacgtcgatttgagacaattatcgaatcatgtcttatttaggagaaacatgcatgaagtgagtcagtgaattcggcaaaactaatttgcttccgtttggaattacctttcgtatgtgaacactgtgcgcggatgtgttgtttgagcaatattatgaataatgtaaatttgtgaatctagcatagataaactgtgcaattcatttcatgtttttggttgaattctatttaatcgaacaagagaaaatttcacactctgtaacaatattctctgtcctacctccaagcgaactttattctcttttttttcacaagcagatcccaccactatattttgttgaaatcttcagtttggtgtacagcggatttgctctaatacgaaacccaccccaaaagcaaagattaaagcgccaaccccacagccaagcaagaaaccatccgtaaagcacacctttgatgttcttttcttccaccacttgaatccaccttttgtcttctcgcttaattatttaattaaaacattgcaactttgggtggttccagcctatattattctgaaatctgcattatcatttttaaagtttacaagttttctcttcaccatatgactatatcttcttgttaccgaaccaattggcattagctgtgctaaactttgtttctatcagtctcctgcaggtcgttttcactattttttattaaaagaactttcaacatgtacttttttttttgggtgatatgcgggtgaaggttactttcatactgtcgtactaggggggaaatcttgattgatgggcccctccagtttctaatgttggaagttgctccatgttgctttctgcaatttgttcaaatctgtttgctctgaattttgcttatgccgggatattttgatgctctcacgcaaaaagctgaatagagtattttcaccaaaaaaaaaaaagaggaggtacgagctagtgatagggatctggctagaccacttgttgttctctcatgattcagctgaatgaagtgtttcaattgattaatttacctgagtgtaagcctttgtttcatcttccgacatgtttgatttttgcagccttaggctgaaatctgctataactttggaggtactaaaacgagtctgagatgggtgtgattagtacggtgcttggtttctctgggtttggctttggattctccgctggtattgtcatcggatactacttcttcatctacttccagccaactgatgtcaaggtgcacatctatatttcaatgattctcttcctttcatactgtataaaattttatcatattgtcatataatgaatacttgtgttgtggaatgtgtggtgctgcttattaacagatgtctacaccttacaaccaaaatggcctgggaacagtttggctcttgctgttacagaaaataatttgacgacggaggcattgatgaactcatttagttttttgtgaagtcctaattcagttagtctcaaccacatactgttaatatgccatatataagcatctattattttatttgggtgtttaaacgatatctttcatgattttcaaataaaggcaacctttcagttggtgtatgatgacctattacactatatatatgcatgtacatgtccattgataccatatgtactggaacggcacacatttgagtttttcttggtgtaatgcaccatattgttgtgctgcatgggggtaatttcttcctctgattgcctttcaggacgtcaaagttcgcccacttgtcgaatatgactcaatatcgttggacggtatccttcctgaaattcctttgtgggtcaagaatcctgactatgatagagtatgcttacccattctttaaactatcatctactcgctgaagaaaactcatgcacttgaacagcatcaatgctagcttatctcatatttctcatcttcctcttattctttgttagattgattggctgaatagatttttggagatgatgtggccttacctcaacaaggtacccttatcttgctgtagactacaccaagtcaccaagaatgaaatggatctctctgattgacaatagaaactttattgtgcatttatcctgtaggcgatctgcagaactgcactggatattgcaaagccaatcattgaagagaacaggaagacgtataaactagaatctattgagtttgaatcacttacattgggtagcttaccacccacctttcaaggttagtgcactttctcattatatacatgcatacatatgtagttcacatgtcttttccttagaagtggcccttgtttctgtatattgtgcaaacagttgtgttcatatcaacttgttttacgatcaactgtaatcaaatcagcatcagagtagttatggtttgcatcgctggagatatagaatatgaatgcattgctactactttgttcccactaagctgtcatactatgtttttatgaccaactctatgcattatagccataggtctgtacagcttgtttattacttattgtaagttaatgtcatatggacatcaccataaacatgtatggtggacaataatgttctatgtgctcagctctctttgtaccctggcattacactgaatctgttgtatgatatttgcttctccaggaatgaaagtgtatgtcacagaagaacaagaattgataatggaaccatctcttaagtgggctgcaaatcccaatgtcactgttgttgtaaaggcttatgggttgaaagcaactgtccaggttttttttttgtcatgggctgaagtagtaattggtgttctcattatgtgatatgatatagaattgagctaattaagttattcattgttcatgtgaaacaaaatttcagattgtggatctgcaagtctttgcttcacctcgtattactctgaagccattggtccctacatttccttgcttcgcaaaaatccttgtttctctcatggagaaggtctgatatctgatcgcttgtatgtttattaccctgctggcaaccttcttactagttatgttggtttggcagccacacgttgacttcgggctgaaacttttcggagcagatttaatggctatccctggtctttacagatttgttcaggtattcctgactcctactttgagccttcttatgcgaaagtttgttggtctatggtgttgagattttcattagtttgctagaaatacgtagagctaaagtgagccgtcatgaaagaactgctacagttcttttaacattcacagcaaacttgtaatgtggtactgtaacttgcttctgttattggtctacacgtgcttagacttagattcgtacacacattcttatgtagcaaaagcaagatatttcttgtttgctataatttcatatcctatagccttgagcccttgacttgatgttatttgatggtgtctatcttagccattacagtggatgtgccacagactgcctcactccattcagtacaagtagttcatattttgaccacttccatttgtgcatttgcaggagaccataaaaaagcaagttgcgagcatgtatttgtggccaaagacattggaagttcccataatggatccctcaaagtacattatctatcacttagtctattatttgtttgtatgcagtttttgagatgccacattaatggttccatctatttgcagagcttctaagaagcctgttggaattctacttgtgaaagttttaagagctcaaaacctgcgaaagaaggatctgttgggtaaatcggacccatatgtgaaacttaagatgtcagatgacaagcttccgtccaagaaaacaacagtgaagcgtagcaatctcaatccagagtggaatgaggatttcaaatttgttgtgacagaccctgaaactcaggcactggaaattaatgtctttgattgggaacaggtatggaccgcttcattaatgaaatccgctacttttttctgcattttttataccaaaaaagacatgattatttcttttgatgtatacaggttggcaagcatgagaaaatgggcatgaacaacattctgttgaaagaacttcccgcagatgagactaaagtcatgactgttaacttgcttaagacgatggatcctaatgatgtacaaaatgagaagtcccgtggtcagcttactctggaggtgacatataagcctttcaaggaagaggatatggagaaagaaggcatcgataatgctgatgtggtggagaaagctcctgatggtactccagctggtggaggactgctttatgttgttgttcatgaagctcaagatcttgaaggaaagcatcacacaaacccatatgcaaagataattttcaaaggagaagagaagaaaacaaaggtactaatatcttgcaaatattattcacttgaacatctgcactgaaattgtttgtggtatgatctcatgtgcccccccccccccccaacctataaaattctacctcaattttgtaggtaatcaagaaaaacagggatccacggtgggaggacgaattcgagtttgtatgcgaggaaccccctgtaaatgataaactgcatattgaagttctaagtaaagcttcaaagaaaggattgatacacggcaaggtatttgttttgtgcctggaagttctgtcccatgccaacattttactttctcgacttgtgcatgatgaatatcagaatcactgatgagtattttaatttattcaggaaaccttaggctacattgatataagcctcgcagatgtgatcagcaacaagcggatcaatgagaagtaccacctcattgattccaaaaatggtcagattcagatagagatgcagtggagaacttcatagcaaccgtgatgaagtaggtgaaatgcttgaacttcgtgagatacaggatgatacatatgaatgttgttgctacaaacagagtttggccaatacctgtgattgagttctgtagatatttacttctttgtgtccaggcatctgttttaccttgttgagatattttgttattttttcaaaattgtgttgagaacaacgtagaagcaaccatgctattggcatcggaagtggaattagatgtgagatgtaatgacccattatccttcaatgcagataaacatagaattctggc</dnaseqindica>

External Link(s)

NCBI Gene:Os09g0538800, RefSeq:Os09g0538800