Os05g0346400

From RiceWiki
Revision as of 10:17, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os05g0346400| Description = Protein of unknown function DUF538 family protein| Version = NM_001061797.1 GI:115463324 GeneID:4338486| Length = 39...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Gene Name

Os05g0346400

Description

Protein of unknown function DUF538 family protein

Version

NM_001061797.1 GI:115463324 GeneID:4338486

Length

3956 bp

Definition

Oryza sativa Japonica Group Os05g0346400, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 5

Location

Chromosome 5:16284322..16288277

Sequence Coding Region

16284422..16284508,16287076..16287130,16287661..16288031

Expression

GEO Profiles:Os05g0346400

Genome Context

<gbrowseImage1> name=NC_008398:16284322..16288277 source=RiceChromosome05 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008398:16284322..16288277 source=RiceChromosome05 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggaccaggtgctgaacaaggtggggagctactggttcagcaagagggcgagcaaggagatcgactccatcggcgacgacatcagctcaatctctacaagcattggaacaggagctaaatggatggtgaacaagatcaaagggaagatgcagaaagcattgccagaccttctcaaggaatatgacatgccggcgggcctcttcccaagggatgctactaactatgagttcaatgaggagacaaagaagctaaccgtgtacattccttcagcttgtgatgtcgggtacaaggattcgtctgttctgcgattctttacctgtgtgactggctacctggagaagggaaagctctctgatatcgaaggcttgaagacgaaagtgcttgtttggaccaaggtgactgccatcaagactgagggatcgaaggttcatttcactgctggtgtgaagaagacccgcagccgtgacgcatatgaggtagtcagagatggtatccccatagacaagttctga</cdnaseq>

Protein Sequence

<aaseq>MDQVLNKVGSYWFSKRASKEIDSIGDDISSISTSIGTGAKWMVN KIKGKMQKALPDLLKEYDMPAGLFPRDATNYEFNEETKKLTVYIPSACDVGYKDSSVL RFFTCVTGYLEKGKLSDIEGLKTKVLVWTKVTAIKTEGSKVHFTAGVKKTRSRDAYEV VRDGIPIDKF</aaseq>

Gene Sequence

<dnaseqindica>101..187#2755..2809#3340..3710#agcggctgcttcttcttcctcattccaatctccccccaatttcggttggattcgtggaggcggattggggatttggatttggattggagagaggggggagatggaccaggtgctgaacaaggtggggagctactggttcagcaagagggcgagcaaggagatcgactccatcggcgacgacatcagcgtaaaccactccccatcctactactcagatcttttctccttttccacccagaatcttttcttgttttcttgttaaattgaaattgtcggcttgcattggtcgtcgagtggttggttaatcttgcgcggtagatggtttcttcaggaagagtttagattgctgcggatttagcgtatggagtggttcggatggagtcacctgtataaggggttggtctccaatgtcaatgtgtggagaagattgatcgatccggtggcaaagattgccgaatgtgtttcgttgattgtgttggagcttttagttgaagcggatgccgctgatacagggaagggcatcgagtggaattcaaggcggcggttagtagaaattgtcaccgtccaggttgtgctgttagtagcagcatcttgctactaatgtggacgactgatgataatgaatgccgtgcgccgccctgtggcctgatcagcagcatcttgctgtgttggattaggtcttagttggttagtcatttcattaacaaaatgtccctcattcatttttggggagtaatgaatagttgttaattgaaaggttcatagtcaaagtccagtattatgtttttttccgataaaaacagtaatatgtgcataaaaatttgcagacaactttacatgaaatcaagagttgtacaagggccgagtttagttccaaaatttttcttcaaacttccaacttttccatcacgtcaaaacttttctacacacataaacttccaacttttccgtcacatcgtttcaatttcaaccaaacttccaattttggcgtgaactgtaccgcatcatgaagtatagtactggcttcaatagttgactacagtatctaaacatcgtttcctgtcagaatcaagggaaatagggtagaagcaacaagcaagaaacacgagattcactacctgatgcttcttcatgacattattattaaactggctaataatgtataaacgattcccaatatatcctcttatagatctatatgaactgaccttgctacgactatgatcaacataacaaacaaaaagcactaaatactttcttacatcacaactagaaaatattaaagagtgaagtgcatgggtggtccctaaacttgtgcaggtgtgtcatctaggtccccaaattctcaaaatgcattattagccccctaaactcgattcagcgtccatcagtagtccgaaacagccacgacacgctttgactgatgacgtggcatgccgacgcggaggtgctgacaccgttgcaagggcagttttgcaaagatccccttctattttactggccatcacaatgcaaatccctgcatcaaatcccctagctactttgtttccaagctctcgatgccacaatcttccctagccctcgtcggcacattaaatactttcttacattaaaatgtatttcacgtgtctagaactttgacacaatactgactttgactcagaatacagggaccatcttgaaactttgtatgtcagaagataaactaattactcatgaatcatcaataaataaatgaactaatccagtaaaggcatcacatttgaacatgttaagtgattctattttgattttagattcttttgtccctttgggctgcacttctgcatggtctcatcatgaaagcatacttaactagaaatctacttattccattagcatgggcatgggcattctaaaaaataaaacattgtttatacttaaaagttatcaatcatttctccaactgaccttccaatgcttggtagccagaagctataattgcatagttcctggtatattgagtatagattaacactatgacaaccggtcaggggctagaccatcaaataactacatggtatcaaatgaaaaggttgaatatgcagcaatgaaaggatcatgcctaagtccgtattgaatgaaggtgtgcagtggatatgatgatctgattatggttggcactgcgctgtaggtgtttgtgaagtagataattgcagttatatctacatgggaggaagtcagtgactggaggaagttggtttgactcctgagtccttgacttgtgaaaatacaagggtcattgctccatattagctggtagtgatggtggggataatatgtaggtcttagtcaattaagctgcaaattcttttgctagtctatttctgcttgttcgttataggatgaattgtacagttgacttgagagttgatgcgtaactggagtaccaagtttcttcgcttctattatagcacatcatgattcttgaatcttaccagagcatgcaaagtgaactaagctaaagcattgtaatcgtgctcactgtcatttctatatggcacttattagttatatgaagcatgtcaggattctatttttggaatactacattttaatagcttccttttgatattcgttaccatgattataaatgtagtgtataagacgtttttggtaagtatggcatttcactatctgagttccagattctgctaggataagccaaattatgcagtgtaagttctaacattactatttacatattgaatacagtcaatctctacaagcattggaacaggagctaaatggatggtgaacaagatcaaaggtatctatgtgtattctgtattattgaatttctaacaaaaatgtgatgtagcaaatagctgcaccattcaatatgctgtatggcacacataaacagatggacatcaatcaatatatgccatccattatctagctcaacaaaaataagatatagcaactagctgtaccgcccaatgtgcgtatccttagaaataacatatgaacaggatgaattatacgccgatatctagtttgtagagaaacagaaggaaacaaacacaacttacacttcttacttagttttgcattatttctctactcaaatggccgttgcatcccttcagctagagttaacaaattttatcacttatgaagcaactcaaataatattgctatgggcagcgatatatacaaaagttaaagatggcatccatgcatattacctacacattccacgttgaaggcatgtaggccattttttcttatgtttatgacatttttcccaagtagacttatatctgattgtgagtaataaacatgttttggtctcagggaagatgcagaaagcattgccagaccttctcaaggaatatgacatgccggcgggcctcttcccaagggatgctactaactatgagttcaatgaggagacaaagaagctaaccgtgtacattccttcagcttgtgatgtcgggtacaaggattcgtctgttctgcgattctttacctgtgtgactggctacctggagaagggaaagctctctgatatcgaaggcttgaagacgaaagtgcttgtttggaccaaggtgactgccatcaagactgagggatcgaaggttcatttcactgctggtgtgaagaagacccgcagccgtgacgcatatgaggtagtcagagatggtatccccatagacaagttctgagcttgtacctgccatgaaaatgtgatgtaattaattagttgacgccttctacaacaaatatcaattgtcatatctcgtgttatgacctatttaactgaactgtattgccataatattgattgtccggcccaagagtgtttctcagcaccttaaaaatttggtgcttatttggttgtgattgtgaatcttgtagacggttttatgtttacttagtttaaggccatgtttggcaccacttcaagtctc</dnaseqindica>

External Link(s)

NCBI Gene:Os05g0346400, RefSeq:Os05g0346400