Os06g0654300

From RiceWiki
Revision as of 20:27, 22 July 2012 by 124.16.129.48 (talk)
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Function

Please input function information here.

Expression

Please input expression information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this gene

Please input related labs here.

References

Please input cited references here.

Structured Information

Gene Name

Os06g0654300

Description

Histidine kinase, homodimeric domain containing protein

Version

NM_001064779.1 GI:115469289 GeneID:4341709

Length

7037 bp

Definition

Oryza sativa Japonica Group Os06g0654300, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 6

Location

Chromosome 6:27683450..27690486

Sequence Coding Region

27683450..27683728,27684846..27685565,27685708..27685764,27685906..27686133,27686443..27686536
,27686610..27686816,27687236..27687366,27687598..27687647,27687780..27688087
,27688203..27688306,27688465..27689181,27689814..27689993,27690358..27690486

Expression

GEO Profiles:Os06g0654300

Genome Context

<gbrowseImage1> name=NC_008399:27683450..27690486 source=RiceChromosome06 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008399:27683450..27690486 source=RiceChromosome06 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggcccgtgggcgcgattccttgcacccgtttttgccccccccccccccccgggcgcttggggggcattttatactatttccttcacatggccgcgcgccccccctccgctcgctgccattagatcctcgccgcaagctcgctctctctcgcctcctccgcgttgcgttcgcattgaccgtccctgctgttcttgcaacctgcgcttgtgggagtggagagtcgtcgagcgggaggaggaggaggagtggtggtactctgttcagttatttcttccagcgcttaatattgagaaagatgggggacgaatacctggctgagcctgaggatgaggtggccatatcaatgtggcctgagaatataggggataaacaccagaagcagttcaaaatggaaaagcttgggaaggaccaagatgcacttgaggatgctaattttcaacagaagccttcttctgtggatttgaaccgccttatggaattggcgaattctgagaaaggcgtttctcaaatgcaatactttgtgaagcactgggaatataagagggcgaatactgctcggcttctaaaggaacaaattggtcttctttgccaacagaggaaagagattgaacaaaggaagcaacaaatactggaggaacaacaattccaggatgaaagttattatgctgttaagtggcaagtaccaatactagatgaagtttacaaagatgaatggaagcgtccgagcaaaaagaatgatgacctttctcataatcaagaacttaaaatagatgcagaatatgacagtatttcgtactggaaagagagagcgatgcaattagaaaagacacttgaggccagtcttcaaagggagcgttcattggaggaaaagttggaggaaaacataaagaatcttcagtcacataccccagttgaggaattctctggaatgttaaaacgggctgattacttcttgcacttggttcttcaaagtgctcctattgttattgctcatcaggatgctgacttgcggtaccggttcatatttaatcacttcccgacattggctgatgaggacgttattggtaagacagattatgagatattgtcaggtgagggtatagaagagatgaataatgtcaagaaggaggtcatggccagtggtaaggctactaagagagagtttgtatttaatacaccgttgtttggagcaaaaacctttgtgacatacattgagccagtattcagcaaatctggggaaacaattggtgtgaattatgttgcgatggacataacagatcaggttacacgaagagagaaaatggcggacataagggtgagagaggctgtccaaaaggccaaagagacagaacttagcaaatctcttcatataacagaggaaacaatgcgagcaaaacaaatgctggccaccatgtcacatgagatcaggtcccctctttcaggggttcttagcatggctgaaattcttgcaactaccaaattggataaagagcaatatcagttgctagaagttatgctgtcatctggagaccttgtattacaattaatcaacgacatccttgatctttccaaagtagagtcaggggctatgaaattagaagctacgacatttagaccaagggaagtagttaaacatgtactccaaactgcggcagcatctctgaagaaggaattgatccttgaagggtgcataggtgataatgttccattggaggtcactggtgatgtgctaaggattcggcaaattctgactaacctaatcagcaatgcagtgaagtttacacatgaagggaaggttgggataaatctacatgttctagacaagcagttaccaggatgtagaatagaaggtgggcaacttcattcaaaagctcattctgcaccagctgccgcagcagaacatttttctgcttctccaagaaaatgcgataatgatactttgggctgctccaatcatgaagatgcttgtcagactggcattccatcaaatgataactttggggagcatcatgagggagatgaagttgtttggcttcgctgtgatgtatatgatactggaataggaataccagagaaatccctgccgttgctattcaagaggtatatgcaagcaagtgatgatcatgcaagaaaatatggcggaacagggcttggccttgcgatatgcaagcagctggtggagttgatgggtggcactctaactgtggtcagcaaagagaatgaaggatcaacattttcatttgttctgccttgcaaaattcctgttaaggaggatcacagtgatgatccagatgatatgcccagttctggtggtgatttcactactagtgatatagaaggttctttcattttcaagccacaagcacggccttatcttttgacatccggagtttcagtaatgaacaacaccaagttgatcggtggcaaccaattctatgatcctccgaacatactagaagaccgtaagccgttctcaaatggtttcgtgttagcagaagatcattctacaaattctgcctctactgctcatcagtcaaatggtcctagtgttagcagaacaaacaaagaacaacatgataatgcaatggtcattgaactgaataggcaagctgaacgggtttccagttcacgaggtgacacgacatcagtttcagggctaattcatgatgaaaggggaccatgcagagttcatgaagaaaagtcacttcacaagaaatccaagtgttctccaagtagcaataaggcaaagatcctcctcgttgaagataacaaagtcaatataatggtggcaaaatcaatgctggagcagctcggccatggaatagatatcgtaaataacggactggaagcaattcgtgcaatacagaagcgccaatacgatattatcctgatggatgttcacatgccagaaatggatggtctacaagccacaaaatttatccgttcttttgagaatactggatgttgggacacttctgtaaagcccgaacacgatcagatcatagctggttcagataatttgtctgattgtgcacacatgaaaaagcaaggaaagcgggttcctataattgcgatgacggcaaattcattttcagagagcgccgaagagtgccttgctgcaggcatggactcctacatatctaaaccagtgaacttccaaaatattaaagaatgcctgcagcagtatttgcctccccagtga</cdnaseq>

Protein Sequence

<aaseq>MARGRDSLHPFLPPPPPRALGGHFILFPSHGRAPPLRSLPLDPR RKLALSRLLRVAFALTVPAVLATCACGSGESSSGRRRRSGGTLFSYFFQRLILRKMGD EYLAEPEDEVAISMWPENIGDKHQKQFKMEKLGKDQDALEDANFQQKPSSVDLNRLME LANSEKGVSQMQYFVKHWEYKRANTARLLKEQIGLLCQQRKEIEQRKQQILEEQQFQD ESYYAVKWQVPILDEVYKDEWKRPSKKNDDLSHNQELKIDAEYDSISYWKERAMQLEK TLEASLQRERSLEEKLEENIKNLQSHTPVEEFSGMLKRADYFLHLVLQSAPIVIAHQD ADLRYRFIFNHFPTLADEDVIGKTDYEILSGEGIEEMNNVKKEVMASGKATKREFVFN TPLFGAKTFVTYIEPVFSKSGETIGVNYVAMDITDQVTRREKMADIRVREAVQKAKET ELSKSLHITEETMRAKQMLATMSHEIRSPLSGVLSMAEILATTKLDKEQYQLLEVMLS SGDLVLQLINDILDLSKVESGAMKLEATTFRPREVVKHVLQTAAASLKKELILEGCIG DNVPLEVTGDVLRIRQILTNLISNAVKFTHEGKVGINLHVLDKQLPGCRIEGGQLHSK AHSAPAAAAEHFSASPRKCDNDTLGCSNHEDACQTGIPSNDNFGEHHEGDEVVWLRCD VYDTGIGIPEKSLPLLFKRYMQASDDHARKYGGTGLGLAICKQLVELMGGTLTVVSKE NEGSTFSFVLPCKIPVKEDHSDDPDDMPSSGGDFTTSDIEGSFIFKPQARPYLLTSGV SVMNNTKLIGGNQFYDPPNILEDRKPFSNGFVLAEDHSTNSASTAHQSNGPSVSRTNK EQHDNAMVIELNRQAERVSSSRGDTTSVSGLIHDERGPCRVHEEKSLHKKSKCSPSSN KAKILLVEDNKVNIMVAKSMLEQLGHGIDIVNNGLEAIRAIQKRQYDIILMDVHMPEM DGLQATKFIRSFENTGCWDTSVKPEHDQIIAGSDNLSDCAHMKKQGKRVPIIAMTANS FSESAEECLAAGMDSYISKPVNFQNIKECLQQYLPPQ</aaseq>

Gene Sequence

<dnaseqindica>1..279#1397..2116#2259..2315#2457..2684#2994..3087#3161..3367#3787..3917#4149..4198#4331..4638#4754..4857#5016..5732#6365..6544#6909..7037#atggcccgtgggcgcgattccttgcacccgtttttgccccccccccccccccgggcgcttggggggcattttatactatttccttcacatggccgcgcgccccccctccgctcgctgccattagatcctcgccgcaagctcgctctctctcgcctcctccgcgttgcgttcgcattgaccgtccctgctgttcttgcaacctgcgcttgtgggagtggagagtcgtcgagcgggaggaggaggaggagtggtggtactctgttcagttatttcttccaggtgggtttcctccttgattcttgcgctccctcgatcggaatcgccggtcaggtgtttcgtcgaacgggtggtgggcgtcgagctggtgggggttttgcgttgttcccggcgtgtttcttgtttgatcgggggtggttcgtgattcttgaagcggaagggttgatcttggcttactccggggttacttgttctatctgtcatttcttcaaatgggttgcgagcatgtgatgtgacaaacatagcagtgcaagatcgaacagcttgctgattttgcattctgttgctttcttgcttatttagttgtgacccatttgacttttgccaggtatatacttgatttgattcttagtgagtcaagcaagtcggatacttgggagttaattccagatatttgtgttcatgtagtcgcgattcatttttaccacccacattttctgtctgattttgtgatgtacccacattttctgtctgattttgtgatgtcaggatcatgagtgaatattagattcgttttttttaaaacttttcttcactgtgtcttcccttgatccaaagatgctccagctgcgtattaggaaggaaaggtgccatctttatggctttggaagaccgaatttcgtctaaaggagatcttcatgtctgcttttgatgccacagtgatgagtgttttttcttggttacatcaattcaccaaagctgaacgacattccagcaaagctgacttccttttggcattttagccacagaagagctcgttcggaaatcagaagtttccacgatccaaatgaaactttagacacatattttctgcacgcacacactgccttcgtctaatcatatttttgctctcatcatcctttcaatttcctgatcccatttttaatctgagaattgtccaactgatttgatacatttaatttattcaattggaatcgttttcttagtttggcactgagttaacctgatgtttatgcagacaagaagaagttgctgattcttgaggagttatactataaacctatgaccttatatcactcttactgtactttgaagtgaaaatttgtgctgcaatgattgcaacgttgagtgacatttcaatgtgacttggtaactgaagcgcttaatattgagaaagatgggggacgaatacctggctgagcctgaggatgaggtggccatatcaatgtggcctgagaatataggggataaacaccagaagcagttcaaaatggaaaagcttgggaaggaccaagatgcacttgaggatgctaattttcaacagaagccttcttctgtggatttgaaccgccttatggaattggcgaattctgagaaaggcgtttctcaaatgcaatactttgtgaagcactgggaatataagagggcgaatactgctcggcttctaaaggaacaaattggtcttctttgccaacagaggaaagagattgaacaaaggaagcaacaaatactggaggaacaacaattccaggatgaaagttattatgctgttaagtggcaagtaccaatactagatgaagtttacaaagatgaatggaagcgtccgagcaaaaagaatgatgacctttctcataatcaagaacttaaaatagatgcagaatatgacagtatttcgtactggaaagagagagcgatgcaattagaaaagacacttgaggccagtcttcaaagggagcgttcattggaggaaaagttggaggaaaacataaagaatcttcagtcacataccccagttgaggaattctctggaatgttaaaacgggctgattacttcttgcacttggttcttcaaagtgctcctattgttattgctcatcaggtattgatttatctatgttcacacctgttataacttgccatatatattgaaacaccatgtccaataaagttgaagaccatgcactgaacatgaattcgatgatagggagagataaataacagatcctgtttttccttttcaggatgctgacttgcggtaccggttcatatttaatcacttcccgacattggctgatgaggtaatttaattttgtttgataccttcaactttacatccctgtcagtttttctgcttaatactgtttaccttctcttaatctgaactctagtagttttcatgtattgcaatttttggttgaattataacctatttttttcaggacgttattggtaagacagattatgagatattgtcaggtgagggtatagaagagatgaataatgtcaagaaggaggtcatggccagtggtaaggctactaagagagagtttgtatttaatacaccgttgtttggagcaaaaacctttgtgacatacattgagccagtattcagcaaatctggggaaacaattggtgtgaattatgttgcgatggacataacagatcaggtgatttattgaatttaaagttcctctgtcatccagtggaaatattctaacttccaattgtctgcaaagaagtatctattgacatgtagataattggcattactgatcaattctatcttttacatgatatgactaggttcatggttttaatttcaataatgcacattgaaacctacttgctgtgattgcaaacctattcactgataaaaccttttgaagtttggtaatcaaattgtgtttgtacagttttcttaatgcattttttgcgtcatggttctcaaccacaatacatttactcctcaacttcaggttacacgaagagagaaaatggcggacataagggtgagagaggctgtccaaaaggccaaagagacagaacttagcaaatctcttcatataacaggtttatatcttttataatattaatttagtgcatctgagttagtatggtacactgaataaatgtcatcttgcagaggaaacaatgcgagcaaaacaaatgctggccaccatgtcacatgagatcaggtcccctctttcaggggttcttagcatggctgaaattcttgcaactaccaaattggataaagagcaatatcagttgctagaagttatgctgtcatctggagaccttgtattacaattaatcaacgacatccttgatctttccaaagtagagtcaggtattttaaatcatatggtattagacattttttttctctctttttttacgtggtttctaggagattctgaattagctataggtacaaaatattcttgcaaaaacaaaaaggaagctacaagtacatatgtatgcaataaacatatctatttccctttccactgcgttctgtgtggtaaaaaagtaatatatgtgatttctgtgagtcgagatggctctagaaacagtacttcaaacacttacttcaaaacctagctcatgcatttccatttgttgctccagttatgtctctttttttttcttttgaaggcgggcaaaagctttgccttttatattaatagagcaggagagttatgtctctttgatgtgtccaatatgcttgaaatctcaagtgttttgcttctaccttcgttacctcaggggctatgaaattagaagctacgacatttagaccaagggaagtagttaaacatgtactccaaactgcggcagcatctctgaagaaggaattgatccttgaagggtgcataggtgataatgttccattggaggtattgtgaattaacaatcttttgatctggccattttgccaataatctacaggttttgtatttatttatctatggtctgcaattcagttgccttaagtcagaaatgatctacccatttataaaaatcgaaagtgttttgcgagtaggcaagatctttgttaatttagtgattcgtctgactgaaagattattcaattgatttcagcatttttttaatatgtattgttataggtcactggtgatgtgctaaggattcggcaaattctgactaacctaatcaggtaaggagtgcatatttgaaaaagcatactagtcctcgtatagtctggcgaagataaaaaaaatattattggatataacacaaaatatgtgtactatagtctgataatgttttgtatttggaatcattccagcaatgcagtgaagtttacacatgaagggaaggttgggataaatctacatgttctagacaagcagttaccaggatgtagaatagaaggtgggcaacttcattcaaaagctcattctgcaccagctgccgcagcagaacatttttctgcttctccaagaaaatgcgataatgatactttgggctgctccaatcatgaagatgcttgtcagactggcattccatcaaatgataactttggggagcatcatgagggagatgaagttgtttggcttcgctgtgatgtatatgatactggaataggaataccaggtatttcctgctatttcttggttatacacgatgaaactttttttgtagttagtagaacatgttttttatattttacctgactaaattacttattttgttctactatcacctgcagagaaatccctgccgttgctattcaagaggtatatgcaagcaagtgatgatcatgcaagaaaatatggcggaacagggcttggccttgcgatatgcaagcagctggtaagctttcatttatgttatacacaattaagatattaagttattatgtgtgcattaaacatcagtatccggacagaacagtaacagataagcggtaactcaaagctatcacctgcaacttacagttaaacatttcactaatttttaccacggtttaggtggagttgatgggtggcactctaactgtggtcagcaaagagaatgaaggatcaacattttcatttgttctgccttgcaaaattcctgttaaggaggatcacagtgatgatccagatgatatgcccagttctggtggtgatttcactactagtgatatagaaggttctttcattttcaagccacaagcacggccttatcttttgacatccggagtttcagtaatgaacaacaccaagttgatcggtggcaaccaattctatgatcctccgaacatactagaagaccgtaagccgttctcaaatggtttcgtgttagcagaagatcattctacaaattctgcctctactgctcatcagtcaaatggtcctagtgttagcagaacaaacaaagaacaacatgataatgcaatggtcattgaactgaataggcaagctgaacgggtttccagttcacgaggtgacacgacatcagtttcagggctaattcatgatgaaaggggaccatgcagagttcatgaagaaaagtcacttcacaagaaatccaagtgttctccaagtagcaataaggcaaagatcctcctcgttgaagataacaaagtcaatataatggtggcaaaatcaatgctggagcagctcggccatggaatagatatcgtaaataacggactggaagcaattcgtgcaatacagaagcgccaatacgatattatcctgatggtatgacaataaacattttcattatctagctttaaattctatattagcatatgttttggtaatccatgtttacttaatcagttcatcaatatgtaattattgcctaatttttaattgcctcactttgacaaattgcaagatgcaaaagtaatacactggggatgctaagatgcaaaagtcatcaatatttccatataacagttgcaagcattacatgaagtcattaataggccacttttcaccggacgataatagaattatagaacacttttagttaatggacctaatataacaccttatggataatgagacatacatcattttggacctaactatagcaagggcaatgccaatcatcgaatgacttggttcaccttttttttcccctcccaagacccatctgatgttgttgacaatgttttagctgttaccaatattcccatgtcacaagtgagccagcatattcagtattcttgctagttctagacttcgttgttctttacaatctcacctcatgctttcatatcaatatatatgtcaataagatatacaaaaccaagtgaaaagttgtcgtacattggaacttttacctctacccttctgctatagcactaacgctatctgcttgacaggatgttcacatgccagaaatggatggtctacaagccacaaaatttatccgttcttttgagaatactggatgttgggacacttctgtaaagcccgaacacgatcagatcatagctggttcagataatttgtctgattgtgcacacatgaaaaagcaaggaaagcgggttcctataattgcggtaagtttccaatttcatcctaattctctataacaggcttagtcccttgctagttcagatatttggtccagcctagatcacttgcaaaacaaatttctaactgctcatgtttagaatgatataagccactgaaggtgtgccttgttttcaattttaaagaatcggcctagatttgcaaataaagaaaaacagaattacatgaagtttctctttcatgataaatagtttaagtagatttcattttgtgacatttctaagcatgtcggttaccaggattgaggatatttatatagggattaaacatattaagttcatatttttctgggacactgtataacccccaaaactcttctgtttcattcagatgacggcaaattcattttcagagagcgccgaagagtgccttgctgcaggcatggactcctacatatctaaaccagtgaacttccaaaatattaaagaatgcctgcagcagtatttgcctccccagtga</dnaseqindica>

External Link(s)

NCBI Gene:Os06g0654300, RefSeq:Os06g0654300