Os05g0367400

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Revision as of 10:18, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os05g0367400| Description = Thiamine pyrophosphokinase family protein| Version = NM_001061872.1 GI:115463474 GeneID:4338566| Length = 4812 bp| ...")
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Gene Name

Os05g0367400

Description

Thiamine pyrophosphokinase family protein

Version

NM_001061872.1 GI:115463474 GeneID:4338566

Length

4812 bp

Definition

Oryza sativa Japonica Group Os05g0367400, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 5

Location

Chromosome 5:17651660..17656471

Sequence Coding Region

17651934..17652061,17652135..17652384,17652468..17652569,17653436..17653508,17655969..17656065
,17656194..17656347

Expression

GEO Profiles:Os05g0367400

Genome Context

<gbrowseImage1> name=NC_008398:17651660..17656471 source=RiceChromosome05 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008398:17651660..17656471 source=RiceChromosome05 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggccccgaggccggccatgtcccactcctccgccttcctgctgccctcgccgtccgcggcggcggcgggcgccgacgccgacggcgccgcctacgcgctcctcgtcctcaaccagcgcctgccccgcttcgcgccccgcctctgggaccgcgcgcaggtgcgggtgtgcgcggacggcggcgccaaccgggtgttcgacggcatgccggagctgtttcctggacaggaccccgacgaggttcgccgcagatacaaaccagatgtaatcaaaggagatctggactcagttcgaccagaagtgaaggaatattattccaatatgggtactcaaatagtcgatgagtcacatgatcaggacaccaccgatttacacaaatgtgtagcttttatcactgagaattcggccatccccaacaaatctaatctgtgtatctttgctcttggggcccttgggggaaggtttgaccacgagatgggaaacatcaacgtacttcatctcttcccaaacaacaggatcatactcctatcggatgattgcttgatctttctgctgccaagaacacacactcataacatccatattgaacggtctattgaggggccccactgtggattgattcccatcggcgcgccttcggccaccaccacaaccactgggcttcaatggaatttagataataccagcatgagctttggtggacttattagcacatcaaacattgtgagagaggagagtactgttgttacgatcacttcagattctgacctgatttggacaatatcgctccggcaccactcttga</cdnaseq>

Protein Sequence

<aaseq>MAPRPAMSHSSAFLLPSPSAAAAGADADGAAYALLVLNQRLPRF APRLWDRAQVRVCADGGANRVFDGMPELFPGQDPDEVRRRYKPDVIKGDLDSVRPEVK EYYSNMGTQIVDESHDQDTTDLHKCVAFITENSAIPNKSNLCIFALGALGGRFDHEMG NINVLHLFPNNRIILLSDDCLIFLLPRTHTHNIHIERSIEGPHCGLIPIGAPSATTTT TGLQWNLDNTSMSFGGLISTSNIVREESTVVTITSDSDLIWTISLRHHS</aaseq>

Gene Sequence

<dnaseqindica>4411..4538#4088..4337#3903..4004#2964..3036#407..503#125..278#aacacgccagctcgcacgaccgcgacgagcccacgactcgcaagtcgcaccctccccgaccccgatcggcgcgaagccacccacttccagccctcgccgtcgccgcgccgccgccgccgccgccatggccccgaggccggccatgtcccactcctccgccttcctgctgccctcgccgtccgcggcggcggcgggcgccgacgccgacggcgccgcctacgcgctcctcgtcctcaaccagcgcctgccccgcttcgcgccccgcctctgggaccgcggtagtagaatgccctcgctcgccgggcttcgcgcgtggctcttctctcttctgttctcttcttctcgatgctgactgactgacgtgggcgcctgcctccgttctcgttctctctctctctctctgcagcgcaggtgcgggtgtgcgcggacggcggcgccaaccgggtgttcgacggcatgccggagctgtttcctggacaggaccccgacgaggttcgccgcaggtaacgcgatctgatcccggattttttttggggggggggggggggggatttcccgccccgcttcggtttcttggatggatcgtgcgcggcgcgcccgcgcgcgcgtgttccagtgttttttttcctcgtgttcgtgttcgtgctcctcgacggcggcggccgtgcagcgaggcgttttggattggtcgagatggcacgcaagtaactctactgcagtaattttagcttcttgcctatctgtgcgacccccccccggcgccaaaatggagtctcggttcagcaaccgatgatcctctccatcttgttcggggcttattagattgatgccattttcaatcgtactactttatattattttttagcaaagttgtataaaaaaacctacatttagtttgttacaaattttgataaatacataagaaattctgccaaaattttgataatattgctaacttgttaaaattttgtaaggtttattttattttaactacgattcgaacagcctcttcatgtcattgaggcgccagtattcgtggtcaaaagttcaggagttggattcttggagatgggagatgcgcagggggttactatgcacatggcatgacggataatttagtttttgtcttcttgggggactttgcgatgcagttcctgtgggcggtggatgtatgcctctgtttaattcattaattggttgctccctgctgcgcttcgcatgcccactatgtgctcgatggaatgccttctttgtgcttccctcatgctagagcttgacacgagtataggtatatggtagtatattcgtgtggataaaggtgtagcactagttgagataatatgctcttaagaaatgagaattcagtcgtaggatcaagctgcctttctaattgtggctcccatcggatggcctattcggtaaactgcttatgctggtgctgagattggggggttataggtagcctaatcccatcttaatggctattgggtacaccaaaggccttttttcctaatacaactgttaccggcaagtggttattctagtatgttagaacttccacttactggttgaggtgcagtggtttcagaactagtggttgatgcattaccctatttattatttattgtcatattatgtatgaatatccttgagctatgagaagcttttataccaagtttattgagaaaattcgaatcatagcacaggaaaaacaacggtaccaaaaaatagcacaaaaaattttcactttcgatctatagcacaggccaccggtttttctttgccccgtagcacttccgtcaggtttggagttgtgatggagtgtttagccgtgactaaggagttcaaaatactaatttgcccctagcatggcgcccaagtgcaaggcttccttcttcctctgcagcctcctctacttgctcctcctggtgctcgccctgtacgtcgttgccctcgccgtgtcccctttctactcgggtagctcatgcctggaggagagccttggcagtggtgccgttgcacatctcacggccgccggccatgctggcaacaggcgcaacgcctcgtcgctgccggtggcacggctgaaaccgatgccagctgatgatgccgcgtcgatcgggctgggccatattgtgttcggcattggtgcctcgtcggagctctggaagagccggagggagtacatcagaacatggtggtggccggcgctgatgcgcgggttcctgtggctggacaagccggtgtacgagttctacggcaggacgggtgaaatcgaccagtacccggcgctctacggcagcgacgaccacatccgcacgtgcatggcagagctgggcatgctgcagacggcggcgctgaggcggctgttcgaggggcccgcgaggctcggctggtgtggcgcagctgtcggtgtccacctctccgtcagcggtgacggcgagctacgcgtccacgccgttgaagagcatgcgcagcagctcgctcagcggcggcggggagacgaggcggtcgcccgatggctgccgcgccgccgtccatgagggagcgaaagaggagacctgatggggaacgaagggcaaatgagtccgacgaaaattttctccactccgatctaacgccgttacttcaaaatgtgacggaagtgctacggggcgaagaaaaatcggtgacctatgctatggatcaaaagtggaaactttttgtgctattttttggtaccgctttctttcttgtgctatggatcgaattttctcaagtttattatatccgcacagacaaaggttgaacaagaatccgtcttatgttccaaattgcttatgcggaatcagagtttgagagatggtcacatatttcagatgatcttaatggctgataatcggaaacaaatatcgaagtattttgggtttgcctttttttacaaaaagatttctcatgtaaaattcacaagtgttttggtgcagatacaaaccagatgtaatcaaaggagatctggactcagttcgaccagaagtgaaggaatattattccaatatggtaaagtaattcaatattttccatttagtcacggttaattaaaaccagatgtaactagtttgggatatggactcaagtataaccagcaataacaggatattactctaattcataaacttctttaatatgttccatccagttttcgttagtcaaaacagtatgattatttcagccatattatctagtaatattattttcaactattcttgctagttaatttttatgttctcttggaatttcatgagcctcactactatggtgctactgcttcttcttggcacatgttttgtttttaatcagaacaaaataagacagtttcaaaccatggcgtgcactagaatggttagtattgaccagtcagaagcctaacaaacagagtatctattgtagcaatgagaaagaaaaaccaaatgactatgacagcttatttaaaaccaatgactgacacaactgaactaaatggaagtcatattccagattatttttaatgggcacatcatggcattttgcgtttttacagaaagtgataaagtaattacatgccgtatgagcattcaagctggtatattctctgtctcagaatagtttttctggtaggaacaaaagaacagtgttaagagttgtcttagattacttaagaacatttagtttcattcttatgtctaatatagacagctgctggtatcttctataggatatagctcacattgccacggtagtatctatttttgcaaatattcatattgatatgtttcatgcttcggtcatcagatggcatgaagtatcttggtataggacttcaaacaaaaatattcctttctcatgcttatctgatgaaacaattgtttttcttgtgaaaattgcagggtactcaaatagtcgatgagtcacatgatcaggacaccaccgatttacacaaatgtgtagcttttatcactgagaattcggccatccccaacaaatctaatgtaaacttcttaagctcgataacgtggtgtcattacccaccatcttcacaaaatttactgccatatttgtcttttaactgcagctgtgtatctttgctcttggggcccttgggggaaggtttgaccacgagatgggaaacatcaacgtacttcatctcttcccaaacaacaggatcatactcctatcggatgattgcttgatctttctgctgccaagaacacacactcataacatccatattgaacggtctattgaggggccccactgtggattgattcccatcggcgcgccttcggccaccaccacaaccactgggcttcaatggaatttaggtaagcctcccacttcatcaattcgacatcgacaaataattggtgcctaaaaatctgtaaatttcatctccagataataccagcatgagctttggtggacttattagcacatcaaacattgtgagagaggagagtactgttgttacgatcacttcagattctgacctgatttggacaatatcgctccggcaccactcttgaaatacgtaacacaattgtatcatagttccaattttgtctcatctattttacgtcgttgagttctacccttagtagaagagtgaaaacatacatggcatctgatgtggctaaacctggtgaaatgttaatatgtaacttagaggacttggcacgtctctaaatatataccttgcactgtaattgcacaattttttttttttgtaaacatgtcaccaaattacctgtaatgtaaagaaccagttgtatttgttaagcaaactccatattttcgctt</dnaseqindica>

External Link(s)

NCBI Gene:Os05g0367400, RefSeq:Os05g0367400