Os07g0108300

From RiceWiki
Revision as of 20:30, 22 July 2012 by 124.16.129.48 (talk)
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Function

Please input function information here.

Expression

Please input expression information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this gene

Please input related labs here.

References

Please input cited references here.

Structured Information

Gene Name

Os07g0108300

Description

Similar to Alanine aminotransferase

Version

NM_001065251.1 GI:115470234 GeneID:4342210

Length

5055 bp

Definition

Oryza sativa Japonica Group Os07g0108300, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 7

Location

Chromosome 7:445195..450249

Sequence Coding Region

445619..445739,446026..446182,446274..446365,446516..446580,447052..447117
,447707..447838,448125..448298,449025..449183,449297..449384
,449492..449573,449757..449874,449959..450162

Expression

GEO Profiles:Os07g0108300

Genome Context

<gbrowseImage1> name=NC_008400:445195..450249 source=RiceChromosome07 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008400:445195..450249 source=RiceChromosome07 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgttcggcggcggcggcggcggcgggaggaagccgctggactacgaggagctgaacgagaacgtgaagaaggtgcagtacgcggtgcggggggagctgtacctgcgcgcctccgagctccagaaggagggcaagaagatcatcttcaccaacgtcggcaacccacacgcgctcggccagaagccgctcaccttcccccgccaggttgtggcgctgtgccaggcccccttcctgctcgatgatcccaacgtcggccttatcttccccgccgacgccatcgcgcgggccaagcactacctcgccatggcacccggtggactaggtgcttacagtgattcccgaggtatccctggtattaggaaggaagtcgccgagttcatcgagaggcgtgatggttatccaagtgatccagaacttatttacctcacagatggtgccagcaaaggtgtgatgcaaatgctgaataccattatcagaaatgagagagatgggattctggttcctgttccacaatacccgctttattctgctgccatttccctctttggtggttctctcgtgccatactacttagaagaagaggctaactggggacttgacttcgtcaatctccgacagactgtggcgtcagcgcggtcaaagggaatcactgttcgagcaatggtgattatcaacccaggaaaccctactggccaatgccttagtgaaggaaacataaaggaacttctcaaattctgcttccatgagaacttagttctgcttgcagatgaagtctatcaacagaacatttatcaagatgagcgcccatttataagtgctagaaaggttctgtttgacatgggtcctcctatgagcagggaagttcagctggtttctttccatactgtgtcaaaaggatattggggggagtgtggacaacgtggagggtattttgaaatgacaaatcttcctcccaagacagtagacgagatctacaaggttgcatcaatcgcactcagtccaaatgttcctgggcagatctttatgggtttaatggttaaccctcctaagcctggagatatctcttatctgaagttttctgctgaaagcaagtctatcctcgagtctttgaggaggagagcacgcctgatgacagatggtttcaatagttgccgaaatgttgtctgcaatttcacagaaggagctatgtactctttcccccaaatacgcttaccaccaaaagctatagatgcagccaaaagggctggcaaagcggccgatgttttctactgcctcaagcttcttgaagcaactggaatatccactgttccagggtcaggtttcggacaaaaagaaggggtgttccacctgaggacgaccatcctgccagctgaggaggacatgcctgccatcatgaccagcttcaagaagttcaacgacactttcatggatcagtacgatggctactccaggatgtga</cdnaseq>

Protein Sequence

<aaseq>MFGGGGGGGRKPLDYEELNENVKKVQYAVRGELYLRASELQKEG KKIIFTNVGNPHALGQKPLTFPRQVVALCQAPFLLDDPNVGLIFPADAIARAKHYLAM APGGLGAYSDSRGIPGIRKEVAEFIERRDGYPSDPELIYLTDGASKGVMQMLNTIIRN ERDGILVPVPQYPLYSAAISLFGGSLVPYYLEEEANWGLDFVNLRQTVASARSKGITV RAMVIINPGNPTGQCLSEGNIKELLKFCFHENLVLLADEVYQQNIYQDERPFISARKV LFDMGPPMSREVQLVSFHTVSKGYWGECGQRGGYFEMTNLPPKTVDEIYKVASIALSP NVPGQIFMGLMVNPPKPGDISYLKFSAESKSILESLRRRARLMTDGFNSCRNVVCNFT EGAMYSFPQIRLPPKAIDAAKRAGKAADVFYCLKLLEATGISTVPGSGFGQKEGVFHL RTTILPAEEDMPAIMTSFKKFNDTFMDQYDGYSRM</aaseq>

Gene Sequence

<dnaseqindica>4511..4631#4068..4224#3885..3976#3670..3734#3133..3198#2412..2543#1952..2125#1067..1225#866..953#677..758#376..493#88..291#ggttccccttcctctctcatcagcacacactgtcaccacaacagccaccaactcctctcaacttcttgatccggcggcggcggcaagatgttcggcggcggcggcggcggcgggaggaagccgctggactacgaggagctgaacgagaacgtgaagaaggtgcagtacgcggtgcggggggagctgtacctgcgcgcctccgagctccagaaggagggcaagaagatcatcttcaccaacgtcggcaacccacacgcgctcggccagaagccgctcaccttcccccgccaggtcactactcctctttctttcttcttcctctactactagtagattcgatcgattgatttctccctattctgttgtgttgtgcaggttgtggcgctgtgccaggcccccttcctgctcgatgatcccaacgtcggccttatcttccccgccgacgccatcgcgcgggccaagcactacctcgccatggcacccggtggactaggtatcacagtcacacacaactctagtgttcttggcaaacctatcatgtatcctttcctcaatcgaaatgctcccataagttgtcaactttagcttccttgcaaaagcctttttagttgtgtatgtagttcttctctcgtagcccatacacgcgagctcgttgactcaggttttatgtaatcaggtgcttacagtgattcccgaggtatccctggtattaggaaggaagtcgccgagttcatcgagaggcgtgatggttatccaaggtcagaatgatcaagagtactcatgacaagtctcaactggtggtgttcttttacatcatagctttcttgggccatattctcacacctgtatcctatacctattgcagtgatccagaacttatttacctcacagatggtgccagcaaaggtgtgatgcaaatgctgaataccattatcagaaatgagagagatggggtatgttattattccttaaaagctatatttgccctgattaattcagtgctatttctactgaagactaatttcaccccatctgattcaaccgagatgtgtaccttccttcgcagattctggttcctgttccacaatacccgctttattctgctgccatttccctctttggtggttctctcgtgccatactacttagaagaagaggctaactggggacttgacttcgtcaatctccgacagactgtggcgtcagcgcggtcaaagggaatcactgtgagtgttttacagaaatttgggagtcacggtatcttattcagtcattcatgcaattactgtaaatgagttcattaccatgttcctgcatacaaaaaacaataccccaagtaaaatagcaatatcaatgtaatattgatgagttcaagtctctctaagtggaaaatggtcactggaatcaacctcctcaccaccggccatcggcgtgttctcttgatcagttcaaatctttgagtcatttctataaggctttgttcaataattcatcaaaaatagaaaggcttatatgaagttctaaagcatgtatgattgaaacatgtcccttggagaggaaccaccgaaccacactcattctgtaatgttatactcctgtgtaagcagtaaggggtacatattgtttttgcatctggtggaaagctatccttttcttaaccagttccgataatcatatcctcatgttatcttcactggctcacctaaaacctctgctagctcttggacagaaacgctagccgttaggttggaggaacactttgctagtcattatctagcatgcaaaaagatgcccacttgatgatttatgtccatcagtacactttgttttggttcctcttttccatgcttatatttcttcccctttcttttattttcaatcatgctgtttgcataaaaatgtagcatttatactatctgtattcagctttgatgttattttttcttccataggttcgagcaatggtgattatcaacccaggaaaccctactggccaatgccttagtgaaggaaacataaaggaacttctcaaattctgcttccatgagaacttagttctgcttgcagatgaagtctatcaacagaacatttatcaagatgagcgcccatttataagtgctagaaaggtaacttttgatttctgacccgtgatgctttatcatgaatacaacatttcccaaccttttactttcatgtggtataccaaaaattaaaatgaacataataagttgccttcaagtaccagatggaaccaagttaattaatagctgctccttttgatgtggaaatttaatagtttttttcacttataaataactaatacatgagtttatgccctaatattgattactttgatcaattgtaaactattctgattgctgatgttaacatggactttctcaatttcttcaggttctgtttgacatgggtcctcctatgagcagggaagttcagctggtttctttccatactgtgtcaaaaggatattggggggagtgtggacaacgtggagggtattttgaaatgacaaatcttcctcccaaggtgatgccattatagaatatgtgattgatctcaaaagatcgtgattcaaatttctagtctttactatatagatttatagaatgcagctacacaaaaatgtagatgcagatactagaaaagatgttacattcttcatgccatgttgcaaagtctaatagagaatatgctagtttcttgttgttatatttggtccacagtaaaatagtgtatatgttgaactatgtaatataatccagtagcccatcctgctaactaggttggtgtagttacatttgttgcaccgaaatattcccttactagagtggtctttgtcagtctcagaaacttgagtatgaacaacgtaaactggagtttgcaagtttgcaactcttaggtttgtccaatttccaaactgtaaacttaatgtttgacaaattttgaagagcctttggcagttgaaatattaagcttttagataagattaagcactcgcacaagattggttatagatcatgtaatgtaagattttactttgaagtttggatagtagcacagataccatttttctgtttgcttgtgatctaattacgttcctcatttcatatgacagacagtagacgagatctacaaggttgcatcaatcgcactcagtccaaatgttcctgggcagatctttgtaagtcaaacaatattcattgtttttgtgcaattatctaaaacagctttccgttcttccagtggccaaaccacaagctttaaaactggaaatatgatatccttaatttatccatggagcattactcaaaatttcggtgccctgagatgcccaaaaatatccagattttttttccatggattgcaacaataatagatgagagcatctaaataatcccttatttggtcagtccatatgttggtgatgagcacaatggcttactttattagcatataatgctgcaccttgaaaatatgtctctgtgggctacagccttacaaggaatagcaaacatgcatttctttttgtgttagagttattcaatgtggtcttagttcctgaaacagtttagttgcaactgtactaattttcttgaagttatgttactttgctttaacaagttaataaaaatggttttaatgtcatttacagatgggtttaatggttaaccctcctaagcctggagatatctcttatctgaagttttctgctgaaaggtatatactttcccttctcatcattttaatccatgtctgcattttcaaggaaaagaagacctacacgggtattcagttattcagtatttatttcctctggtagtaatttcgagtgttctatgtataatgtgcctcctgatgatgttgcagcaagtctatcctcgagtctttgaggaggagagcacgcctgatgacagatggtttcaatagttgccgaaatgttgtctgcaatttcacagaaggtgacattaacatatgagccccttcctttatggcaataggagaaaatgaagcagcttctctaataatgctcttccaattatgttgttgcaggagctatgtactctttcccccaaatacgcttaccaccaaaagctatagatgcagccaaaagggctggcaaagcggccgatgttttctactgcctcaagcttcttgaagcaactggaatatccactgttccagggtcaggtttcggacaaaaagaagggtaggtgtttcccttacatatacatatgtatcttcaaagtttcataaacatcagagatctctcaactagacatgactcaggagtacctgaatttatcctttccaatcaaatttttagatttatttggcagttaagcgttttctaacttccaaaaggactggtagaaagcatttgaaccatacatctgacttgtcttcttgataggaaatctgaaaagatatcactgacgattttttgtgtgtatatataagtaagtaaactgatgcatggttggtgtgcactgcagggtgttccacctgaggacgaccatcctgccagctgaggaggacatgcctgccatcatgaccagcttcaagaagttcaacgacactttcatggatcagtacgatggctactccaggatgtgaaatgaaaacaagatgagcactaccccaggagaagagagaaagaatctgcctcagcgtggctgatcgagcagttataattaaaaggcactgttaattaattaattaatcaatcaatcgaaaggctaattatttgctgcaacaatctgtaactcgatctactgaaggaaaaaaaaaacttcttgtccttgatatgcatgatgtatagataaaattatttctgctctttgggaattgaataatacgggcgcacccaccggttacagtctactatacatggtcctgtctgtaaggctgcagtagcgaactatttctatgttttgatactgtgaacaagttgcttggcaagtcacttgtgctggctgaaatataatgcagatcaatatatgatcagatcaatgcagaattatacattggtctctaaatt</dnaseqindica>

External Link(s)

NCBI Gene:Os07g0108300, RefSeq:Os07g0108300