Os09g0542100

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Revision as of 07:34, 21 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os09g0542100| Description = Peptidase A1, pepsin family protein| Version = NM_001070354.1 GI:115480450 GeneID:4347737| Length = 3686 bp| Defini...")
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Gene Name

Os09g0542100

Description

Peptidase A1, pepsin family protein

Version

NM_001070354.1 GI:115480450 GeneID:4347737

Length

3686 bp

Definition

Oryza sativa Japonica Group Os09g0542100, complete gene.

Source

Oryza sativa Japonica Group 

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 9

Location

Chromosome 9:22178906..22182591

Sequence Coding Region

22179247..22179464,22179556..22179627,22180253..22180310,22180397..22180496,22180579..22180652
,22180736..22180871,22180948..22181172,22181246..22181481,22181984..22182116
,22182230..22182249,22182365..22182565

Expression

GEO Profiles:Os09g0542100

Genome Context

<gbrowseImage1> name=NC_008402:22178906..22182591 source=RiceChromosome09 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008402:22178906..22182591 source=RiceChromosome09 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>ctttttcttctctctgcgtttgctttgctttgcttcgttgcgagctatggttggtggtggtggtggtgtggtggttgttcgggctgtgctgctgctgctcgccgccgtggccgcggcggaggcgctgagcctggacgtccaccaccggtactcggcggcggtgcgccggtgggcggccgccgccgcgccgccacacgggaccgcctcaacgatttcggatttttgcattacgcggtggtggcgctggggacgccgaacgtgacgttcttggtggcgctcgacaccggcagcgacctcttctgggtgccatgcgactgcctcaagtgtgctcctttccaatcccccaactacggaagcttgaagttcgacgtgtatagccctgcgcaatcgactactagccggaaggtcccgtgcagtagcaacttgtgtgatctccaaaatgcctgccgttctaagagtaacagctgcccctacagtatccagtacttgtcggataacacctcatcctctggggtattagtggaggatgtcttgtacttgacatctgactccgcgcaatcgaaaatcgttacagctccgataatgttcggctgtggacaggttcagacaggatcgtttctaggcagtgctgcgccaaacggtctgcttgggcttgggatggacagcaaatcggttcctagcttgctagcaagcaaaggacttgctgctaattctttctccatgtgctttggcgatgacggtcatggtaggatcaattttggggacacaggaagctcggatcagaaggaaactccattgaatgtttataaacagaatccatattacaacataactatcacgggaattacggtgggaagtaaatcgatcagcacagagttcagtgctattgttgactctggcacgtctttcacggctctgtctgatccaatgtatactcaaatcactagcagttttgatgcacaaatccgttcgagccgaaacatgcttgactcttccatgccgtttgaattttgctactcagtaagtgccaacggaattgttcatccaaatgtaagtctgacagcaaaaggtggaagcatatttcctgttaacgatccaataattaccataacggacaatgcttttaatccagttgggtactgcttggctattatgaagagtgagggtgttaacttaataggagagaatttcatgtctggactgaaggtcgtctttgaccgagagagaatggtgttgggctggaaaaacttcaactgctacaacttcgacgaatcgagcagacttccggtgaaccccagcccttcagctgttccttcgaaacccggtcttggtccgagtagctacacccctgaagcagccaaaggagctttgccaaacggcacccaggtcaatgtgatgccttcagcaagctcaccgctgcaaccgcagagcgtttccgccaccattgttctcctattcctcatcgttctctga</cdnaseq>

Protein Sequence

<aaseq>LFLLSAFALLCFVASYGWWWWWCGGCSGCAAAARRRGRGGGAEP GRPPPVLGGGAPVGGRRRAATRDRLNDFGFLHYAVVALGTPNVTFLVALDTGSDLFWV PCDCLKCAPFQSPNYGSLKFDVYSPAQSTTSRKVPCSSNLCDLQNACRSKSNSCPYSI QYLSDNTSSSGVLVEDVLYLTSDSAQSKIVTAPIMFGCGQVQTGSFLGSAAPNGLLGL GMDSKSVPSLLASKGLAANSFSMCFGDDGHGRINFGDTGSSDQKETPLNVYKQNPYYN ITITGITVGSKSISTEFSAIVDSGTSFTALSDPMYTQITSSFDAQIRSSRNMLDSSMP FEFCYSVSANGIVHPNVSLTAKGGSIFPVNDPIITITDNAFNPVGYCLAIMKSEGVNL IGENFMSGLKVVFDRERMVLGWKNFNCYNFDESSRLPVNPSPSAVPSKPGLGPSSYTP EAAKGALPNGTQVNVMPSASSPLQPQSVSATIVLLFLIVL</aaseq>

Gene Sequence

<dnaseqindica>3128..3345#2965..3036#2282..2339#2096..2195#1940..2013#1721..1856#1420..1644#1111..1346#476..608#343..362#27..227#ttctctccgtataaagttgatactagctttttcttctctctgcgtttgctttgctttgcttcgttgcgagctatggttggtggtggtggtggtgtggtggttgttcgggctgtgctgctgctgctcgccgccgtggccgcggcggaggcgctgagcctggacgtccaccaccggtactcggcggcggtgcgccggtgggcggccgccgccgcgccgccacacgggacggccgagtactacgccgcgcttgccggccacgacggcctgcgccgccggtcgctcggcgtcggcggcggcggcggcggcgccgagttcgccttcgccgacggcaacgacacctaccgcctcaacgatttcggattgtaagctcgcctcggattgaatctttgaattatctggtttttttctcttgtttatggtggattgaagaaggcaaagtggtggttgttgcgggtgtcccgggttggttgcgcagtttgcattacgcggtggtggcgctggggacgccgaacgtgacgttcttggtggcgctcgacaccggcagcgacctcttctgggtgccatgcgactgcctcaagtgtgctcctttccaatcccccaactacggagtaatctcctccctcttcttctttttcctctagtttttgttgcaattggtttcaaaagtttgttgttctgttagatattttaggttgttaggataactggataagtagtagtctagtagagaagagaatttcactttagggattggggaaagttgttgtgaatggcataataatagatttgttgctaaacaaagatgaaagtggtactagtagactactagactggtagaaaagattacgacaggattatgagcatgtctataaagaggagaaaatcatgaaggcactgcatgtgcttgtgtgcttcttggaagcctttctattagcatgacagcttgaactgggacctcgttcagcttaaagaaaatagccgaatcttgtattcttccgtgcactcttgtcagaattttgaaatttactcttgcttatgggaagctgctgaatcatgatgaccttactgagtaatctatttacatttgctgcacatgacaaatttatacagagcttgaagttcgacgtgtatagccctgcgcaatcgactactagccggaaggtcccgtgcagtagcaacttgtgtgatctccaaaatgcctgccgttctaagagtaacagctgcccctacagtatccagtacttgtcggataacacctcatcctctggggtattagtggaggatgtcttgtacttgacatctgactccgcgcaatcgaaaatcgttacagctccgataatgttcgggtatgtactatatgatccaccacatgcttatgatcgcagtgttgttgtgctgaattttgtgtaaaatgttcagctgtggacaggttcagacaggatcgtttctaggcagtgctgcgccaaacggtctgcttgggcttgggatggacagcaaatcggttcctagcttgctagcaagcaaaggacttgctgctaattctttctccatgtgctttggcgatgacggtcatggtaggatcaattttggggacacaggaagctcggatcagaaggaaactccattgaatgtttataaacagaagtacgttttgtcagaacaatatttcaggaacaataaatctactgtaacttaacgttggtgtactctctttttgcagtccatattacaacataactatcacgggaattacggtgggaagtaaatcgatcagcacagagttcagtgctattgttgactctggcacgtctttcacggctctgtctgatccaatgtatactcaaatcactagcagtgtaagtagcgtaaccatattagcagacaattgaccatgctagatatttgatggtcattcttatatttctcccttcttattcagtttgatgcacaaatccgttcgagccgaaacatgcttgactcttccatgccgtttgaattttgctactcagtaaggtaagttttgtaggagcaatccctgatagaatgcagattggcactatgctttaactcatctctgtgtttctgcactttccagtgccaacggaattgttcatccaaatgtaagtctgacagcaaaaggtggaagcatatttcctgttaacgatccaataattaccataacggacaatgcttttgtaagaaatccttgatactcagcactttctttaagccatgttaagtgagcttgtttatttatctttgctgcttttgcttgtggcagaatccagttgggtactgcttggctattatgaagagtgagggtgttaacttaataggaggtaagctcctgtactttcacactctttagctatttaaagatgcctggttctctgataatatttcaagttgctatgctttagttttactggatgctgtgtagaccaaatagtagttctgtctgtagtgtacaagtgggacactcctctagttcatctctattcttcatctgtagttggtattagatgagttatgtaatatgaggtatacggtgttgtttgaatctatcatattcatttttcggacttgcctcgctagcctattgttgatgcaaaaaaatgccaaatttccctgttaacacctatacaactatacattgggttttggtctcaacatttatcaaattcctgtctgctaccttttgttatatatatatatatatatatatatatatatatatatatatatatatatatatatagtaaatttgtttggtgctccatggtgcctaaagaaaattccagctattgccttgatgttcaaattccccttttctttatgatgtactactaaattaatatacattatttgggtcaacaaatgttttcttttaaattcttcacaatatgataaacgacaataatcaatatcactgatttttactctctcccgttactttgggtgcagagaatttcatgtctggactgaaggtcgtctttgaccgagagagaatggtgttgggctggaaaaacttcaactgtaagtacctccatattcctcaaaactattcttcagtttcaactcataccttagctagaacaatgccctgaaaaattgtgtctgtcatcaggctacaacttcgacgaatcgagcagacttccggtgaaccccagcccttcagctgttccttcgaaacccggtcttggtccgagtagctacacccctgaagcagccaaaggagctttgccaaacggcacccaggtcaatgtgatgccttcagcaagctcaccgctgcaaccgcagagcgtttccgccaccattgttctcctattcctcatcgttctctgaattctgaattctgatcagctcagctccagccaccatagcttcagagctccattatcctgtattgatgatttgattacacataggatcacattctttttcttccttgtttttgtagttgctgtagggctataggagttgtagagttgtagagaggatagatcacactcacaagaatcgtcatagagaggccatttttcagttgattttttttacgtgttcatatgtataaacctcataataatgcattccactgagggtttgtttcaggtggattgatgcacatgtatacaggattttgatgtattgactcaatagattaatgatgatactggcctatatat</dnaseqindica>

External Link(s)

NCBI Gene:Os09g0542100, RefSeq:Os09g0542100

Retrieved from "https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os09g0542100&oldid=1398"