Os05g0384800

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Revision as of 10:19, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os05g0384800| Description = Similar to Chromosome condensation regulator protein (Fragment)| Version = NM_001061951.1 GI:115463632 GeneID:4338654...")
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Gene Name

Os05g0384800

Description

Similar to Chromosome condensation regulator protein (Fragment)

Version

NM_001061951.1 GI:115463632 GeneID:4338654

Length

8446 bp

Definition

Oryza sativa Japonica Group Os05g0384800, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 5

Location

Chromosome 5:18593810..18602255

Sequence Coding Region

18594281..18594410,18595586..18595944,18596362..18596508,18596907..18599012,18599358..18599552
,18599687..18599767,18600339..18600428,18600524..18600610,18601797..18601862

Expression

GEO Profiles:Os05g0384800

Genome Context

<gbrowseImage1> name=NC_008398:18593810..18602255 source=RiceChromosome05 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008398:18593810..18602255 source=RiceChromosome05 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgtcggacgcgtcgtcggatctcggcggcgcgcggcccggggccgtggagcgcgacatcgagcaggccatcactgctctcaagaaaggagcatacttgctgaagtacgggcgcagagggaagccaaaattttgcccatttaggctttccaatgatgaatctatattgatatggttttccgggaaagaggaaaaacagctgaggttgagtcatgtgtccagaataattcctggacaacgaacggcaatttttcagaggtatccacgaccagaaaaggaatgccagtcattttctctcatatctcatgatagatcattggacattatatgcaaggataaagatgaagccgaagtgtggtttgctgggctaaaaaccctcataacacgtagtcatcaaaggaaatggagaacagaatcgagaagtgatatgctttcctctggtacaactagtcccagaacttacacaagacgaagctccccattgagttctcctttcagcagcaatgacagtgtccacaaggatggtgttgaaaattaccgacttcgtagtccatttgggagcccaccaaaggtcggtctggagaaggcattttctgacattgtgtcatatgcagccccacccaagcccttcttcccatcggattctaatgccggttctgtccattccgtgtcttctgggcagtcagataacacaaatttacactcaaggggcatcccaatggatgctttccgtgttagtttatccagtgctgttagttcatcaagtcatggttctggtcatgatgatggtgatgccctaggtgatgttttcatatggggagaggggactggggaggggattcttggtggtggcaattcgagagttgggaactcctcaggtgtaaacatggattgtcttataccaaagccattggaatttgctgtaaaacttgatgtacagaacatttcttgtgggggaaggcatgccacacttgttaccaagcagggagagatctactcttggggtgaggaatcaggcggacgtcttggtcatggtgtagattgtgatgtgccccagccaaagcttattgatgctcttgctaatatgaacattgagctagtagcatgtggtgagtaccacacttgtgcagttacgctctctggggatctgtacacttggggaaatggtacttccaattctgggcttttaggccacgggaatgaagtcagtcactgggtacccaaaagggtcaatggaccattagagggcatacatgtttcagcaatttcatgtggcccctggcacacggctatagtaacttctgcaggacagctattcacatttggagatggatcttttggagttctaggtcatggagatcgacagagtctttcagtccctagagaagtggaatcccttaaagggctacggactgttcgagcagcttgtggtgtttggcacactgctgctgttgttgaagttatggtcggcaattctagttctagcaactgttcttctggtaagatttttacatggggtgatggtgataaaggccgtttaggacatggtgacaaagatacaagacttgtcccaacatgtgtagctgctttggtcgagcctaacttttgtcaaatagcttgtggtcactgtatgacggtggcgctgactacctctgggcatgtatatacaatgggaagtcctgtctatggccagcttggaaatccacaagcagatggcatgcttcctgtgcgtgttgaagggaagctacataaaaactttgtggaggagatctcatgtggtgcttatcatgtcgctgtcttgacttcaaggactgaggtgtacacatggggtaaaggtgcgaatggtcggttaggacatggagatacggacgataggagttctcctactttggttgaagctctgaaagataagcaagtcagaactgttgtttgcgggattaacttcactgcagcaatatgcattcacaagtgggtttctggagttgatcagtccatgtgttctgggtgtcggttgccatttaatctaaggagaaaacgtcataattgctacaattgtgcacttgtattttgtcatgcctgcagcagtaagaaatctctgaaagcttcattagcaccaaacccaaacaagccttatcgcgtatgtgatagctgctacagcaagctgaataagggtcctgagacagatagatattcttcagcaaagcggggatctgttatacaggggttcaatgattctgttgacgaggagttggagacaaaatcaaatgcccagttgtcgagattgtcatcattggaatccttcaagcacatggatagcagaacttcgaagaaaaacaagaagtttgagttcaatagcagtcgtgtttcccctattccaaatggcagttctcattggagtgggctcaacatctcaaaatcctttggttcatcaaagaaatttttttcagcatcagttcctggatctagaattgtttcaagggcaacatcacctgtttcaagaagagcaagccctcctcgatccacaactccaacacctactttgggtggtctaacctctcctagagtggtggatggtgtgaagccaaatgatagcataagccaagaggttctaagtttgaggtctcaggtggaaaatcttactcgcaagtctcagctactggaagctgatttggagagaacaactaaacagttgaaggaagctatttcaattgcaggggaggaaactgcgaagtgcaaagctgcaaaggaagttatcaaatcattaactgcacagttgaagggcatggcagagaagctacctgaaggagcaggactggtgaagaacagcagactgccaccgctgccaggaatttctattccaactgatatatcagttgcatctgagagtttgggtagcccaagaagttctggagaaccctgttcaaacggttctaatggtttgcttgtttccaatggaccaacttcagttagaaataagttgagtcaccctgaaattcccaagaatggaacaaggctacccgattcagattctaagcatgaatctgaatgggtagagcaagatgaaccaggggtgtatatcactcttactgccctacctggagggactcgagatctcaagagggtccggttcagccggaagcgtttcagcgagacacaagcagaacaatggtggcaagagaatcgggcacgggtatacgagcagtataatgttcgagtagtcgacaaatcggttggcagtattgataatgatgtacatcattga</cdnaseq>

Protein Sequence

<aaseq>MSDASSDLGGARPGAVERDIEQAITALKKGAYLLKYGRRGKPKF CPFRLSNDESILIWFSGKEEKQLRLSHVSRIIPGQRTAIFQRYPRPEKECQSFSLISH DRSLDIICKDKDEAEVWFAGLKTLITRSHQRKWRTESRSDMLSSGTTSPRTYTRRSSP LSSPFSSNDSVHKDGVENYRLRSPFGSPPKVGLEKAFSDIVSYAAPPKPFFPSDSNAG SVHSVSSGQSDNTNLHSRGIPMDAFRVSLSSAVSSSSHGSGHDDGDALGDVFIWGEGT GEGILGGGNSRVGNSSGVNMDCLIPKPLEFAVKLDVQNISCGGRHATLVTKQGEIYSW GEESGGRLGHGVDCDVPQPKLIDALANMNIELVACGEYHTCAVTLSGDLYTWGNGTSN SGLLGHGNEVSHWVPKRVNGPLEGIHVSAISCGPWHTAIVTSAGQLFTFGDGSFGVLG HGDRQSLSVPREVESLKGLRTVRAACGVWHTAAVVEVMVGNSSSSNCSSGKIFTWGDG DKGRLGHGDKDTRLVPTCVAALVEPNFCQIACGHCMTVALTTSGHVYTMGSPVYGQLG NPQADGMLPVRVEGKLHKNFVEEISCGAYHVAVLTSRTEVYTWGKGANGRLGHGDTDD RSSPTLVEALKDKQVRTVVCGINFTAAICIHKWVSGVDQSMCSGCRLPFNLRRKRHNC YNCALVFCHACSSKKSLKASLAPNPNKPYRVCDSCYSKLNKGPETDRYSSAKRGSVIQ GFNDSVDEELETKSNAQLSRLSSLESFKHMDSRTSKKNKKFEFNSSRVSPIPNGSSHW SGLNISKSFGSSKKFFSASVPGSRIVSRATSPVSRRASPPRSTTPTPTLGGLTSPRVV DGVKPNDSISQEVLSLRSQVENLTRKSQLLEADLERTTKQLKEAISIAGEETAKCKAA KEVIKSLTAQLKGMAEKLPEGAGLVKNSRLPPLPGISIPTDISVASESLGSPRSSGEP CSNGSNGLLVSNGPTSVRNKLSHPEIPKNGTRLPDSDSKHESEWVEQDEPGVYITLTA LPGGTRDLKRVRFSRKRFSETQAEQWWQENRARVYEQYNVRVVDKSVGSIDNDVHH</aaseq>

Gene Sequence

<dnaseqindica>7846..7975#6312..6670#5748..5894#3244..5349#2704..2898#2489..2569#1828..1917#1646..1732#394..459#acctcgcaccattcctctctctctctctctctcccccctcgccctcgagccctcgatctccacatctctctcgcgcgcgctctggtggtctctccacccccccccccccacgcagcgcaaacccccccgattccccccctcgcttcggccaccagcggccgcccagcccgtcgcgcgcttccgccgcgccgccgcggagatttttttttgtgcgcgcgcgcgctctccccgagggggggcgggaacggggtcccgtgccattgggagggggatgccgggatgtggcgggcggtgggtccagggaggaggaggagaagggcggtggtgaggcggtgaggcggcggcggcggcacgcgcgcggccagaggaggcggggggggggggggggcggcgatgtcggacgcgtcgtcggatctcggcggcgcgcggcccggggccgtggagcgcgacatcgagcaggtgagccgcttcccgatcctccgcttagctcggcttgggaatgccgaggaaatcccggctgtcggtgtgttcctcgtctcggggccgcgcgtggcggggaaggcgtctctggatggtagatgcatttgctttgcgtttgtgcgttttcgtgcggctgctgaattctgctaccgcagcagtagctctgcgtgtcccccgcggagaaaccaaaattttggggagtctggagcctcggctttgctgctgcctgcaagtagggttctgtggtggaagccgatttaattactgttatttggcctcttgggttggataattccagagacattgatttggctacagtgattgtgtttgctaactttttttttggggaaggccaatcgaattgggctgtttgctggttgttactactttgctctcgtgcaggttgtatgattgagttgggagtggtatgctataacggtttcccaaccttcttttgctgttggttaatgctgcgtgcggtaattgattgagttgagctatactgctatattagttatgtcctattgctttgaggggaagtgccagtgtgttaattggatcaatacacgtcttctctgcagtaatttctgacagatactttctccttgaatgaacttgtaaaattctttgcccatttttttgagtttccattttgttctctctgtgctcacatggcacaatgaataattttaatgaagttctgagttatggtttacctcaaagagaatagcctatatgtgctacccttctaggagaatcccttatttcgaaagatgataattgtttcagagattattgatgagacctttgcatttgctgtaacatgtagcatttcatctcttgtgcattagggagtttgctttagtaattcacttctccatgtaatagctggaacgctattttcatcatctccagtattaaccgattagtttatagtgctatacataatataatgttcatttccagctctgaagtagtttcaaattgtctgaaagaacatgtcgatggccaattagaatgcatgtgattgttccattgtatttaatgcctctcctttgtggcatctaaaatcagagttatttcttgacctagttttattattttactaggatagtagtgtgatactaactactgatgctcgatacaacattccactgtttctcaggccatcactgctctcaagaaaggagcatacttgctgaagtacgggcgcagagggaagccaaaattttgcccatttaggctttccaatgtgagttttgtttgcattttctctcactgagttgtaaagccctctttgtttacccttcagatttatggacattcatggtgtttttgttcattcaggatgaatctatattgatatggttttccgggaaagaggaaaaacagctgaggttgagtcatgtgtccagaataattcctggacaacgaacggtgagttaccatttctggaaaacttcaaatttcaggaatatagatttctctaagtctaattggccattgtgatcaaatctcatatcatatctggtaaaacaacagtgtatttcttttgcttgtttgttttggcgttaactccttatgaatacatctgtgggtgtctcttcagcttttaccctaacataattctccctccttaagaggagtttcgttgcattcttactgacaactgacaagaacttttacagttcaaatttctgatatctactactgatacaacttatgccattaggagatagctgtaatcattagtcttgcccccataacaacaaattacataccacttcaaactgatgcaacttctgatggttcatttatgattctcttttgccactgcctccagaaaaggagctacatatggcagttacaaattgatctgtcccatcatgttgtttttttttttttacattcgctttctgatggaaaacgattcacaagggagtattcaactatatttaaggtctgtaactctcccctaacaatgtctgtttctcttttgccaatgcaggcaatttttcagaggtatccacgaccagaaaaggaatgccagtcattttctctcatatctcatgatagatcattggacattgtaagttatatactgttcattttatatgtgctgtttatcttcttggttcgatttccatttttgatgcacactaaacccctttcctcggtagcaaattgattttgtttggtgatgtggttttatcatgatatcagatatgcaaggataaagatgaagccgaagtgtggtttgctgggctaaaaaccctcataacacgtagtcatcaaaggaaatggagaacagaatcgagaagtgatatgctttcctctggtacaactagtcccagaacttacacaagacgaagctccccattgagttctcctttcagcagcaatgacagtgtccacaaggtatttcccactacccacccagctcatcccactatgccactatattgtgtgttcgtcacctatacagaactacccaatctcttcctgttttgtatgttccatcttttttcttttccattttttggttttggcctgctgctttaagatctgaacaacatggcaaaagtcttatgtcgtacctaggctgttctctttgttctgtatggtctgtacaatctcattacatagatatttatcgctttgcagcaccacaataagaattgtatcttactgaccatgttttattttattcttctgtctacttcaattaatataacaaacatcttgataattgtcctgcaacaggatggtgttgaaaattaccgacttcgtagtccatttgggagcccaccaaaggtcggtctggagaaggcattttctgacattgtgtcatatgcagccccacccaagcccttcttcccatcggattctaatgccggttctgtccattccgtgtcttctgggcagtcagataacacaaatttacactcaaggggcatcccaatggatgctttccgtgttagtttatccagtgctgttagttcatcaagtcatggttctggtcatgatgatggtgatgccctaggtgatgttttcatatggggagaggggactggggaggggattcttggtggtggcaattcgagagttgggaactcctcaggtgtaaacatggattgtcttataccaaagccattggaatttgctgtaaaacttgatgtacagaacatttcttgtgggggaaggcatgccacacttgttaccaagcagggagagatctactcttggggtgaggaatcaggcggacgtcttggtcatggtgtagattgtgatgtgccccagccaaagcttattgatgctcttgctaatatgaacattgagctagtagcatgtggtgagtaccacacttgtgcagttacgctctctggggatctgtacacttggggaaatggtacttccaattctgggcttttaggccacgggaatgaagtcagtcactgggtacccaaaagggtcaatggaccattagagggcatacatgtttcagcaatttcatgtggcccctggcacacggctatagtaacttctgcaggacagctattcacatttggagatggatcttttggagttctaggtcatggagatcgacagagtctttcagtccctagagaagtggaatcccttaaagggctacggactgttcgagcagcttgtggtgtttggcacactgctgctgttgttgaagttatggtcggcaattctagttctagcaactgttcttctggtaagatttttacatggggtgatggtgataaaggccgtttaggacatggtgacaaagatacaagacttgtcccaacatgtgtagctgctttggtcgagcctaacttttgtcaaatagcttgtggtcactgtatgacggtggcgctgactacctctgggcatgtatatacaatgggaagtcctgtctatggccagcttggaaatccacaagcagatggcatgcttcctgtgcgtgttgaagggaagctacataaaaactttgtggaggagatctcatgtggtgcttatcatgtcgctgtcttgacttcaaggactgaggtgtacacatggggtaaaggtgcgaatggtcggttaggacatggagatacggacgataggagttctcctactttggttgaagctctgaaagataagcaagtcagaactgttgtttgcgggattaacttcactgcagcaatatgcattcacaagtgggtttctggagttgatcagtccatgtgttctgggtgtcggttgccatttaatctaaggagaaaacgtcataattgctacaattgtgcacttgtattttgtcatgcctgcagcagtaagaaatctctgaaagcttcattagcaccaaacccaaacaagccttatcgcgtatgtgatagctgctacagcaagctgaataagggtcctgagacagatagatattcttcagcaaagcggggatctgttatacaggggttcaatgattctgttgacgaggagttggagacaaaatcaaatgcccagttgtcgagattgtcatcattggaatccttcaagcacatggatagcagaacttcgaagaaaaacaagaagtttgagttcaatagcagtcgtgtttcccctattccaaatggcagttctcattggagtgggctcaacatctcaaaatcctttggttcatcaaagaaatttttttcagcatcagttcctggatctagaattgtttcaagggcaacatcacctgtttcaagaagagcaagccctcctcgatccacaactccaacacctactttgggtggtctaacctctcctagagtggtggatggtgtgaagccaaatgatagcataagccaagaggttctaagtttgaggtctcaggtacatatcttactatattctttatccagttacctttctaatttgtattctccttcagtaaattgtaggcatgtaacttaattgaatattgagcatcatttgttaatctttggacacctgaatggaaatcaaaatatcttgtgcgaacatggcaaatttgctggtttttgtatgcagtcctgtttttcttctgattttattaatcttattaccttgtgagttgtgactattcatggacgcgaaccatctatctttttgggacccactagttgtttttcacctacttaatattttgactgccttattcaagcattggaaagatagatcattaaactccccatttgtttaaggtgagatcatgctcaacaatgcattctctaacaatcttaatatctcaggtggaaaatcttactcgcaagtctcagctactggaagctgatttggagagaacaactaaacagttgaaggaagctatttcaattgcaggggaggaaactgcgaagtgcaaagctgcaaaggaagttatcaaatcattaactgcacaggtaagattgctatacttcaagtaggatgtctactgtacagacattagtaaactaacaaagtaaaaaactgcaagtatgtgtaaacggatccccttgattaaaactgaatggctcaaaagtcaaaaccaagggaactgtggattggtcaaaggcagcatggtgccttctaactggccctgatgagtacaacttttctaggtttcgagtctatgactactaaatgtgcatgcattacttttgatagaagacagtctgctgctttagtggagttggaaagtggaaaactaaaaatgacattatttggatcttaactttgtatttaagaaactaagaatgcatgatcatcttcaaattcaaataatgattttgtacaatatgttgaatattttcactaacaattctttgttcgtgtaatagttgaagggcatggcagagaagctacctgaaggagcaggactggtgaagaacagcagactgccaccgctgccaggaatttctattccaactgatatatcagttgcatctgagagtttgggtagcccaagaagttctggagaaccctgttcaaacggttctaatggtttgcttgtttccaatggaccaacttcagttagaaataagttgagtcaccctgaaattcccaagaatggaacaaggctacccgattcagattctaagcatgaatctgaatgggtagagcaagatgaaccaggggtgtatatcactcttactgccctacctggagggactcgagatctcaagagggtccggttcaggtacacaccaaccacacagaggcaaaatatatagtcattagtcagcaaaaatcttgtctatcaatcttgaacatagtacattattcgtttggcgagtagtctatgagactagatctaacaagcaatgacagcaattgagtgattgacacttttgggcattccatttatttggcttactatatagtataatcaacttattttttgcttgtcctatatagatatttggggttttaagtgtttactctttttttatggagagaacaacatgaagtgggcagtagcctctagttgagaggatcttgatacacaaaaccactattaacttactctatatatgtgcagatcaagaatgcaatgaatattacaataatttgataataactattgacaacagacctgtctaaatagaaccttcaacttgcaaaaccagatcatgtgaccgcctcaaatcaatcctgtcctgtttgagttgatgtagcaccctgtccacgacacagagccatccaactcgatttgacttgatttagcatctagcattgagtagatataggtaacagcattcagtgaggtttaggtaaataaaatgccttgcctgatttttctgccctccttggcattattgtgttctcccacttccacaagccatgtcatggatgcagtagagacctcgtcccatctgctccttgatgatagtccaggatgtagagttgtggggacgattttgggggtgaagatgttggaatgggatgctagtgggtgccttgcagggatgtgagaagggcacaccagcatttcagatccttcgggggcaagtaggtgattgttggagatggtggaggagattgttggtggtgatggtgcaggaatttgagattatgcccaccatttctggagacaggtaaaaggtaggctggagtggctgtccagatcatgctgggcttgggtatgtaagcgagagagttggaaaaggagaggacacatgggctcactgaggtatacttaaaattggtgccacaccaagtgataaccaggttggatattcctgggggtcaaaaatgttctggctatatgagttgaagatttctactttagactgttatggagctgtgttcgacttttcacactcactaattctgttatggcgcatactcactaattctatgttctgaatgcagccggaagcgtttcagcgagacacaagcagaacaatggtggcaagagaatcgggcacgggtatacgagcagtataatgttcgagtagtcgacaaatcggttggcagtattgataatgatgtacatcattgacataagaaatttgacttggtcagtcactacaaagctctcaaagctctcaccgttgagcatgggtgctgacgcggctatgatattttggttaggcccagaagaggaggggcctgctgtttgaaaaatgtgggcttgcattctttttacacgattctttcctcttccatttcccttgtgtggaatgtagagtgttcaagcagaagttatgtaaatggttagtggcagctggctaatctgtcctgtaaatgcataagcaagtgcatcaattttagactatgatcttcctgattttcctttaattggcaaatataggtgcaaaatctaagtgatgatgatgaagaatatttggtgctaattgtagattgagatgcaaagtagctttgaaagatttaagctttgttctggctgacttgagtgcctgttttggcgaaaatttcatgccaattactctgctcccccagattgaacgtc</dnaseqindica>

External Link(s)

NCBI Gene:Os05g0384800, RefSeq:Os05g0384800