Os05g0388600

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Revision as of 10:19, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os05g0388600| Description = Conserved hypothetical protein| Version = NM_001061965.1 GI:115463660 GeneID:4338668| Length = 5375 bp| Definition ...")
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Gene Name

Os05g0388600

Description

Conserved hypothetical protein

Version

NM_001061965.1 GI:115463660 GeneID:4338668

Length

5375 bp

Definition

Oryza sativa Japonica Group Os05g0388600, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 5

Location

Chromosome 5:18803289..18808663

Sequence Coding Region

18803364..18803897,18804843..18804911,18806197..18806328,18806482..18806535,18806628..18806672
,18807224..18807363,18808165..18808290,18808383..18808419

Expression

GEO Profiles:Os05g0388600

Genome Context

<gbrowseImage1> name=NC_008398:18803289..18808663 source=RiceChromosome05 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008398:18803289..18808663 source=RiceChromosome05 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggcgttcccgtcgccgaactccctctccgcggcgtcccaccctacgtcctcctcctcctccttccacctccacctgcagctgcagcaacccgtcccccacctccccttcccgcgctccctcccgctcaacctccccgtcctccgcctcgcccgccccctcctccctcccgccccgctagcctcctccggaagcggcggcatcggcatcggcggcggaggcgatgacgacgagggtcgcgacaacgcgggcggaggagacggcggcgacgacgacgcgtcggtcaacaggagggaggcgctgttcgtgctggcgcagctggggcggaagctcgagagcctcccggccgacctcgccgcggccatcgagggcggccgcgtccccggggagatcgtgcagcggttcgccgacctcgagaagtcgggactcttccgctggctgctccagttcggcggcttcaaggagcgcctcctcgccgacgacctcttcctcgccaaggtcgccatggagtgcggcgtcggaatcttcaccaagactgcagcagagtatgagcgaaggagggaaaactttgtcaaagagcttgactttgtgattgcagatgtggtcatggcaatagttgcagactttatgttggtttggcttcctgctccaacagtgtctctgcagccaccactagcagtaaatgcaggatctattgctaaattcttccacaattgcccagataatgccttccaggttgctttggctggaacatcatactcccttttgcagcgcgtaggagctattatgaggaatggtgcaaaactttttgcagtgggaactagtgcatccctgattggaactggtgtgaccaatgcactgataaaagcacgaaaggctgttagtaaggattttgaaggggaaagcgaggatattccaattgtatcaactagtgttgcctatggtgtatacatggccgtttccagtaacctcaggtaccaaatcctggctggagtgattgaacagaggatgctcgagccattactacaccaccacaaactagtgttgagtgcactgtgctttgctgttcgaacagggaacacattcttgggttctctactgtgggttgactatgccaagtggataggcatacaatag</cdnaseq>

Protein Sequence

<aaseq>MAFPSPNSLSAASHPTSSSSSFHLHLQLQQPVPHLPFPRSLPLN LPVLRLARPLLPPAPLASSGSGGIGIGGGGDDDEGRDNAGGGDGGDDDASVNRREALF VLAQLGRKLESLPADLAAAIEGGRVPGEIVQRFADLEKSGLFRWLLQFGGFKERLLAD DLFLAKVAMECGVGIFTKTAAEYERRRENFVKELDFVIADVVMAIVADFMLVWLPAPT VSLQPPLAVNAGSIAKFFHNCPDNAFQVALAGTSYSLLQRVGAIMRNGAKLFAVGTSA SLIGTGVTNALIKARKAVSKDFEGESEDIPIVSTSVAYGVYMAVSSNLRYQILAGVIE QRMLEPLLHHHKLVLSALCFAVRTGNTFLGSLLWVDYAKWIGIQ</aaseq>

Gene Sequence

<dnaseqindica>76..609#1555..1623#2909..3040#3194..3247#3340..3384#3936..4075#4877..5002#5095..5131#accacactccggtccacgccctccaccaccacccgccgccgccgccgcccaaaacccttctccctcccggcggccatggcgttcccgtcgccgaactccctctccgcggcgtcccaccctacgtcctcctcctcctccttccacctccacctgcagctgcagcaacccgtcccccacctccccttcccgcgctccctcccgctcaacctccccgtcctccgcctcgcccgccccctcctccctcccgccccgctagcctcctccggaagcggcggcatcggcatcggcggcggaggcgatgacgacgagggtcgcgacaacgcgggcggaggagacggcggcgacgacgacgcgtcggtcaacaggagggaggcgctgttcgtgctggcgcagctggggcggaagctcgagagcctcccggccgacctcgccgcggccatcgagggcggccgcgtccccggggagatcgtgcagcggttcgccgacctcgagaagtcgggactcttccgctggctgctccagttcggcggcttcaaggagcgcctcctcgccgacgacctcttcctcgccaaggtcgccatggagtgcggcgtcggaatcttcaccaaggtccgtgaggaattattccaacattaccattttttaatttttttagtttttggttgtgttattatgtggctcgtacttcggatcatacagatgtggtggtttggtttggtttggttcgctgtggacttgactacctttactgtcaaatcttctgtggtctagctagctgtcttagagatgagattccgactgattccctggcttagattgttttagtagtcggggtttggtttgatggcgatgcgtgtctaactcttgcattgctccgtcgcttccgagatggtaaggttgtttgctcacaactggctgtgtttggctggaagcttctgcgatgaatggacctggaatatttatgcttggtttagatgcctgatcagaaggatttattcaacaaacaaagcagatgctggattaccatataaaaaaatggtgaatataacctttcagaaaagatattttaaaaaaggtttattagattagagtggaataaaagagcatttctgttgctggaaataaaagtatttatgcaaatgactagagtggcattcttctgctttacatggaccactggccaatatggaatggtcaccttctgttggctatatgtggtcctatccttcagacaatccactagcaagcgcatggagaacttgagttacttcgagatatgaagaaacttgcccatctgctggcagaagagaaagtacatgccatgcaggggtatatcacttgaattgaatacattgtttttagagacagtgtgatattttcacttggactttacagtacctcacctttctacccccctactttctttgtctgaaattgtttctcttggagttcttccttttaccatgaatacattttatggctctgtgattcagttcacaatgcttgtacagatttcttactgctgatttggtatatcctctctaattcttgtagactgcagcagagtatgagcgaaggagggaaaactttgtcaaagagcttgactttgtgattgcagatgtggtatgcttctattatcattttggatattgccattctttttcttctgcaattctagaagctagtttattctgtcgagttgcttgccgctgtgccttcagaactagagggttcactgtccaagggtgcagcaagatggtttcagattgtggaaaaaatcgtaaacatgtaattttttggggagataattaagcaccctcttgcctccctgtttcatctgcacttacaaggtcaaattaacatttcaaatgcaaccaatatatgattcattgttgcttaatttataaaagcatggacaacagttgtctgaaagaaagaaaatatcttttcttttatggcgtcatgtctagtggtaactcttggtgcaaatatgtttatacttggaaggaaacccgtaaaagttgcctgcaaagtattcaacaagatcaatcatataaaattttaaactggtattagtgaacttggatatttgcaagaaaggaaaggtaaaagtagctgcaaagtctttggctaggtccaatggtcaatcatgtaaaatttcaatctcaactgtacattatatgcatgctgagaaacagggaaaatgttttttttcccctctttggataatggcctattttcatttcatatttttttccttttgtttatctcaaagcataattaagtatgaacatgacattttgcagatgattctaagtgatacctccacctttttttcctttgaattttgcaagtagattgcccaaactaattgagttagaatgttagtactgagtcaaggtctagcactggatatgtatcttacaatcaaatgttacaacttagctaactgttgtggctggataagtttctgtttagttaaacatgttgtgctgttctcaaccttcacactacatgatcatttatgttgcatacagagaaggtgttataagtttcttaaatgtaggaaaacgttcatgcctactttgtaccagttgtgccacgaactactacaacaatgttagaaagtcttgtcacatttaatttccgaaatagtactaatcaacaacaaataattccatttcttactaccaccaattgattttttccacttcaattgtagatgttctccaaaatatgcgcatggtaaattatataaatggtgactcttagtttcttactacttttttcttattcaccccttgtgattatataaactatgccaatgttatccaagtcatttcaagctgaattgttattacttgcaattagtcactagagtcctaatctgtagtttaatactttccaggtcatggcaatagttgcagactttatgttggtttggcttcctgctccaacagtgtctctgcagccaccactagcagtaaatgcaggatctattgctaaattcttccacaattgcccagataatgccttccaggtgacataacaataacctcacattgatctgggcatgttttaagcttatttcctccttttcctttcggcatagatgtaaattttccttttcagaaggaaaaatgtttatcctttatttaaaacttgaaaatgaacttagtaacttctcctgcaggttgctttggctggaacatcatactcccttttgcagcgcgtaggagctattatggtatctttctgggccatattgtggccctcacagttgaaattgcattattttagcaggttgttcctattatctaacaattttgcttctttcagaggaatggtgcaaaactttttgcagtgggaactagtgcatccctggtaagtttgtcatagttgtgatttcagacaaaaaaacgacagtctattttccttattattaattggcattagtagaacaaattgcttagattctcgacttgtttgtgatgtgtgagaagtaatgtttcattgataaaataatacaataaagtaatatataggagactgtaggatctgcttggtccttttcatgcatattcaaagtgccgcctagttgtttattcgaaaaccttaaggcctggaatgtacgactcaattagtttgttgatgctgttaagttggctgtacaaatgtaatgactccagggcattggaatatcactgttctttttgttaatgttaaaagaaaggaaagagcaattatgccttccagaatgccatatatatatttttaaaggtagatggcacttcagacattaaaatgtatgatttattgatgatacattgtactactttgtcttaacacaacttttgggtcatttgtcacttttattcatccgctttccaagactactaggaaagcttacactgtgtatccaatttaatttccagattggaactggtgtgaccaatgcactgataaaagcacgaaaggctgttagtaaggattttgaaggggaaagcgaggatattccaattgtatcaactagtgttgcctatggtgtatacatggccgtttccagtaacctcaggtaacacatatatttgtttatacattaattcccacgaatataaatatctgttcattttacctgatgaaaagggtagctcaaatgttagctgctcacttcttgactgttggacatgtctatcattttttttgttggatactattctaaaatctttatgaaatcacatgatctctcctatttgtaaatctaaattagaactactagttgtgctctattgtatttgtatatcaccgaagaatcccggtcgtagcttccttgtcattgtgaagtaccaaattctaacatgagaaacatgccgactcttataacattttccacaacaatcatctacattgcctaacatacattttctgagagtaaatttcacaaaactagaggtattttaaccaaactattagaaaactatagatctaaggtgttgtatcacagagctatagtatagcaccaaagctatcacaaattacagatttaagccaagtatcataaaactatagatttagtactacagctagcacaaaactatagattatagagtttaaatcgctagtagtattattctattggagccatagacgttatagttttgtgatttaattggtgctaaacttgtagttttgcgataattttgttgctaaatctgtagttgtgtgataactttagtgctaaatctttagttttgtgaaaacaatgccttaaatatgtagttttgtgatagtttgattaaagtacctatagtttttataatttactctaaatcttttttgtactcaccatgcttttctttaactcctttttcaacaggtaccaaatcctggctggagtgattgaacagaggatgctcgagccattactacaccaccacaaactagtgttgagtgcactgtgctttgctgttcgaacagggaacacattcttgggttctctactgtaagtaatctgcatccctctggagtcaagtggttaaactctgttcctttctgatcaggtcacttactgggtaaacttttttaccttttcaggtgggttgactatgccaagtggataggcatacaataggttcgaactttgaatatagatctgaaattgcgagtcattagcaaataccatgcagactctgaacacttacgactcccgtttggcgcaagaaaatctaggacagatttcggtttttatggaactgaagcccgaaggaaaagggtaatttgtcgaattcccatgaacaagtgattggattgttagtggtggtttgtgcgttctgttttgttgaattggattcctttgaagcaataattttgccgtc</dnaseqindica>

External Link(s)

NCBI Gene:Os05g0388600, RefSeq:Os05g0388600