Os05g0391500

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Revision as of 10:20, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os05g0391500| Description = Similar to Endo-beta-mannosidase| Version = NM_001061979.1 GI:115463688 GeneID:4338683| Length = 8594 bp| Definitio...")
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Gene Name

Os05g0391500

Description

Similar to Endo-beta-mannosidase

Version

NM_001061979.1 GI:115463688 GeneID:4338683

Length

8594 bp

Definition

Oryza sativa Japonica Group Os05g0391500, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 5

Location

Chromosome 5:19017690..19026283

Sequence Coding Region

19017820..19018007,19018265..19018403,19019126..19019353,19020081..19020139,19021297..19021345
,19021489..19021719,19023076..19023245,19023332..19023536,19023884..19024552
,19024650..19024877,19024959..19025747

Expression

GEO Profiles:Os05g0391500

Genome Context

<gbrowseImage1> name=NC_008398:19017690..19026283 source=RiceChromosome05 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008398:19017690..19026283 source=RiceChromosome05 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggctgctgctgctgcggctgcggcggcggcggcggccgaagtggggaagcgggtgctcgacacgggctggctcgccgcgcgctccaccgaggtggccctcaccggcgagcagctcaccaccaccgacccgccgcccgccgacccggagccgacggcaccctggatgcacgccgccgtccccggcaccgtgctggggacgctgctgaagaacaagctgatccccgaccccttctacggcctcaacaacgagtcgatcatcgacatcgccaaatccgggagggggcactacaccttctggtttttcaccaccttccagtgcgctccggctggacaccagcatgtgagtttaaactttcgtggaataaactattcagctgaagtgtatttgaatgggcataaagaggtacttccaaaaggaatgttccgaaggcacaccctcgatattactgatgttcttcgtccggatggtaaaaatctgcttgctgttcttgttcatcctcctgttcatcctggtgcaattcctcctcaaggaggtcagggtggtgatcatgagattgggaaggatgttgctactcaatatgttgaaggatgggactggatgtgtccaataagggatcgaaacactggtatctgggatgaagtatcaatatccgtaactgggcctgtgaggataatggacccccacctagtttcaactttttatgatgattttaagaggtcatatctgcactgcacgcttcagttggagaacagaagttcatggctttcagattgtaaattgaaaattcaagtttcaactgaactcgaggggaacatttgcctggtggaacatctacagagttatgagatatcagttcctcctaactcagttctagagtacactattcctcctttgttcttctataagccaaacctgtggtggccgaatggcatgggaaagcaatccttatacaatgttgagattggtgtggatgccaatggattcggtgaatctgattcatcgaatcatcattttggattccgtaagattgagagtacaattgatggttctaccggtgggaggatcttcaaggtaaatggtgaacctgttttcatccgaggagggaactggatattgtcagatggccttcttcgattaacaaggaagcggtatatgactgacatcaagtttcatgctgatatgaactttaatatgcttcgctgttggggtggtggattagcagaaaggcctgatttttatcatttttgtgatatctatggtttgatggtttggcaggaattctggataactggagatgttgatggacgaggaattccaatatcaaatccaaatggtcctttggaccatgatctcttccttctatgtgctagagatactgtcaaattacttaggaatcatgctagcctagctctatgggttggtggaaatgaacaagtcccaccagttgacattaacaaagcactgaagaatgatctgaagttacatcctatgtttgtaagtaaccatacaacaaaaagtccaggaaaggatatatcagaagacccaactgacccaagtaaataccttgatggcactcgagtgtacgtccaaggatcaatgtgggatggttttgccaatgggaaaggcgactttactgatggtccatatgagattcaatatccagagagctttttcaaggacagtttctacaaatatgggtttaatcctgaagttgggtctgttggggttccagttgcagcaacaattagagcaacaatgccctcagaaggttggagcattccaatttttaagaagaggatcgatgggtacataaatgaagtaccaaatccaatatgggattaccacaagtacatcccctactcaaaaccagggaaagtccatgatcagattgaactgtatggccatccaagtgatctcgacgatttctgtgaaaaagcacaattggtcaattatgttcagtacagagcacttctggaaggatggacttctttcatgtggacaaagtttacaggtgttttaatttggaagacacaaaatccatggactgggctacgaggacagttctatgatcatctcctagatcaaacagctgggttttatggttgccgttgtgctgctgaaccaattcatgtacagctgaatttggatagttacttcatagaggtggtaaacactacagccgatgaacttcgggatgtggctgtcgaaatttcagcatgggatctagatggcgcgtccccatattacagagttactgagaaaatagcagtgccaccaaaaaaagtgcagcaagtcacggagatgtcatatcctaagacgaagaacccaaagcctgtatattttctacttctcaaactttttaagctgtcagacaaccaggtactctccaggaacttttactggctacatcttcctggaaaagactacaagttgttggaacagtatcgtcagaaacagataccactgaagatcaactctaagatttccatctcaggctctggatacaaggtcagaatgtccatagagaacagatcaaagaaaccagaaaacgctaacgtatcaaccatgaatctagccgatgcaaacggttccgacagaaccggagaagaagccatccaggatggacatagcagtggcctgtgggggaaaatccgcagaggcctcatcatcacaaggtcagatgacaacgtaagaacagtggaggtgaaaggggccgattcaggcgtctcgtttttcctccatttctcggtacacacatctgagccatcatccagtcaggatgtttacaaggacacaagaatcctccctgtccactactccgacaactacttctccctcgtaccgggggagaagatggccatcgacatctcgttcgaggccccccagggatccacccccagggtcattctgaaaggctggaactatcacctggaccatgcagtgacgttatag</cdnaseq>

Protein Sequence

<aaseq>MAAAAAAAAAAAAEVGKRVLDTGWLAARSTEVALTGEQLTTTDP PPADPEPTAPWMHAAVPGTVLGTLLKNKLIPDPFYGLNNESIIDIAKSGRGHYTFWFF TTFQCAPAGHQHVSLNFRGINYSAEVYLNGHKEVLPKGMFRRHTLDITDVLRPDGKNL LAVLVHPPVHPGAIPPQGGQGGDHEIGKDVATQYVEGWDWMCPIRDRNTGIWDEVSIS VTGPVRIMDPHLVSTFYDDFKRSYLHCTLQLENRSSWLSDCKLKIQVSTELEGNICLV EHLQSYEISVPPNSVLEYTIPPLFFYKPNLWWPNGMGKQSLYNVEIGVDANGFGESDS SNHHFGFRKIESTIDGSTGGRIFKVNGEPVFIRGGNWILSDGLLRLTRKRYMTDIKFH ADMNFNMLRCWGGGLAERPDFYHFCDIYGLMVWQEFWITGDVDGRGIPISNPNGPLDH DLFLLCARDTVKLLRNHASLALWVGGNEQVPPVDINKALKNDLKLHPMFVSNHTTKSP GKDISEDPTDPSKYLDGTRVYVQGSMWDGFANGKGDFTDGPYEIQYPESFFKDSFYKY GFNPEVGSVGVPVAATIRATMPSEGWSIPIFKKRIDGYINEVPNPIWDYHKYIPYSKP GKVHDQIELYGHPSDLDDFCEKAQLVNYVQYRALLEGWTSFMWTKFTGVLIWKTQNPW TGLRGQFYDHLLDQTAGFYGCRCAAEPIHVQLNLDSYFIEVVNTTADELRDVAVEISA WDLDGASPYYRVTEKIAVPPKKVQQVTEMSYPKTKNPKPVYFLLLKLFKLSDNQVLSR NFYWLHLPGKDYKLLEQYRQKQIPLKINSKISISGSGYKVRMSIENRSKKPENANVST MNLADANGSDRTGEEAIQDGHSSGLWGKIRRGLIITRSDDNVRTVEVKGADSGVSFFL HFSVHTSEPSSSQDVYKDTRILPVHYSDNYFSLVPGEKMAIDISFEAPQGSTPRVILK GWNYHLDHAVTL</aaseq>

Gene Sequence

<dnaseqindica>131..318#576..714#1437..1664#2392..2450#3608..3656#3800..4030#5387..5556#5643..5847#6195..6863#6961..7188#7270..8058#aaccggaatgcttgcgtttgcgtgagctccaaaacccccacaccccactcgccaacgccaaagccatcggcggcgtggactcctcccagaaatccgtagataggtggcgtcctagcgatcgggagcggagatggctgctgctgctgcggctgcggcggcggcggcggccgaagtggggaagcgggtgctcgacacgggctggctcgccgcgcgctccaccgaggtggccctcaccggcgagcagctcaccaccaccgacccgccgcccgccgacccggagccgacggcaccctggatgcacgccgccgtccccggcacgtacgtctctccgcctcccctctccgatcccctcccccctccttccccccgcgagaatttctacgtttctaccactcgcagtcacagtagctccaatttcatgggggattcgcgcggtttgcgcctcggtgcggtggtttatccagttgctgttgcgtgtgcttcgccattagaataattgcaggttttttttggtttatccctcgcgtgctccgccgcttagctgaccccgtttctgttggatgatgaggatgcagcgtgctggggacgctgctgaagaacaagctgatccccgaccccttctacggcctcaacaacgagtcgatcatcgacatcgccaaatccgggagggggcactacaccttctggtttttcaccaccttccagtgcgctccggtacgcaatcacacgctgtcacgcactgattttttttttccgtgcagcagttgttaattcatctgttccttcgacaatgcctgtactgtagcatgtggtacagtgagttgttaattacgcacagtcaagctgtctacttacaattgaaaagcaatttgttgcttggggaagttcatcatgcaggacagttgcacacttgcactgcagtgtttagactttttgtggggagccacagcgggtaattccaagggaagagtttaagctgcctgctgttgagctaaactgtgtctgtctatggatttcttctgctgcattgccttacagttcatccttttgcaaaagaaattctatagacatgaagctagcctgaatactcttgtaaatcgaggtgattgggtaataagtgttccttagcttaatcgatcagatccttgtgatctaaataacattgcgtgttcaatcgacccacgttgcatttaggtcctattgtactgaagccttccataaagccatactgcagcagcactattgggcctgcttgcttttgtcccttttccaactattggctttaacgattgtcaaccaccggaactgctcttaatgtatgtggtatttgactcttacaggaacgaggacactgtaacactatactgaataggggtgtagttcttgtgctaaattgctgacacattgaactttttattgcaatgtttcatccgtaggctggacaccagcatgtgagtttaaactttcgtggaataaactattcagctgaagtgtatttgaatgggcataaagaggtacttccaaaaggaatgttccgaaggcacaccctcgatattactgatgttcttcgtccggatggtaaaaatctgcttgctgttcttgttcatcctcctgttcatcctggtgcaattcctcctcaaggaggtcagggtggtgatcatgaggttagtcagatgtctttgatatctctaatggcatttctaatgctgtgaaagtagagtacttcatctaactaccaagatttccattgccattttcccccttattcgcaaagcttgaacttagacccatgtgtttctttttatagtttcacaggagttgagtctctaaataatagacgtaactagttccattttacttcaacatgtcaacggaccaccagtgcattttgttctttgtgatatgtgtttctaaaatgttcatttttggtatcgcgatgactttagaatatgctttacatatattgctctgcagattacaataagttaacatctagtcagttgcacttgcttgcaagtgaacattccataatctatagtgtaatctagtgtagtttataatacatatcacaatgactttacaaaatgatttacatattttgttctttgtaactaggctttctcacttcagggagtcataactcttgacctcctttgagaagtgggaattgaatcgtgcatcgtagtgtagtttatacccaaagagactgaggaattgcgattttaagagatcattgtgaagactaagtgatatcaatgagtcatggttatgtagtatggatggaaaattactctgttcagtattcttctttaaaatggaaatattactgatgaaaaggaaaattcatggcatatgaatggtcacacctttcaaattggtggtctttttcagattgggaaggatgttgctactcaatatgttgaaggatgggactggatgtgtccaataaggtagtagttgctactgctttagtgctttctatgttttttttttctttagacacattgttttgttccatttggttctcttcagacgccttgattgttttttatgactctatatcttagaaattgatagatgttcacatttgcgaaaagaaattggcaggcgttcaaatttgtgaaaatttcaaaatgccaaatgcttaagtgcagactgtatgttagcatagtgttataactggttcacatggagtgtttccactgggttatgtgatctatcatagcacatgctgcagcatatttgtttcttttattattattgatttaatatctcatagccaagggacaatattggaggcatacatgacagtgggcatatgtttgaaccaaatatgctcatattatgctgggtatgtttgaaccagcatattttgtccaacataatgttaagatccataagtgcactgtttgagtgctattcggatacaaagcctctattcggtgctaacaattacaggaagtaaaccaaacatgcccaagagtttagtagtcgccgtgtgttatgggtaaaagcatctaacttgatacaatgaactagttgtccagttgatatatgaacttttaaatttttattttgaagatgggttgtattttttcttttaaagattggcttcaaagttcaaatctaggaaggcctttgtactgaagtttcaaaggcctgttttgatcattataaatttttattattattatcaaagaccactgcagtacaatttaggtgccatgacggaataatttttgcattaatgtaggcctacctcacttaaactctgaatcttagttgcatgactgattgatcagtgatcatcttagcatcacaaagattgagtgaaaaaaatgttttagaattatttcagttttcagcaaagctcataatctatatagtgaagattactactagataccaacagtatccaatgtcttgttttgctgtaatatttgatcaaaatttccaaacaactacttactatagtttcttctagacatatgctacctatgacaagaatgacctatgctaccctttccttttttagcaccaatctaatggttcttaaaagcaattcgcaactgtaacatttattgatatttctttttcggcatcctagggatcgaaacactggtatctgggatgaagtatcaatatccgtaactggggtgagtttttccacccctgcattcttttatgagtatttttatacttactttatttgcatgaattccttgattgttgattatatgagtttttttgttgttgagccaatgatggtgcttatgtgtattacatactttttatgcagcctgtgaggataatggacccccacctagtttcaactttttatgatgattttaagaggtcatatctgcactgcacgcttcagttggagaacagaagttcatggctttcagattgtaaattgaaaattcaagtttcaactgaactcgaggggaacatttgcctggtggaacatctacagagttatgagatatcagttcctcctaactcagttctagagtacactattcctcctgtgagtttccttttcttaagcaactcggacattgctttgtttagttttaactcagtcgttacctttttaaaatttcttattttcatcatagctaagatgcactattgtagtgtgttcagccaatcaatttgtcctaggtggaacaaatcgtgtacttgttctcaattttgttgcccatttgtcctgagctagcaatagaggtgatacacattgtaattaacagctatattttcgcttgcaaatgggaaatttgcttcactttcgtatttttgcatttcttttctggccatgaattttcagactataccatttagcacttaccagttattattcagtattgctcattgtatttgatcttgaagatgttgatacactaaaaattagctatctcagaaaaacattgttgactagctaaagatttttgtagtactgagcagatgccatttgttaacaaattagcaacaaaaaataatatatcctctatcctgagtgtgtaaattcctcccggatgtaatactcaccaacttataaataattttgtggaatgtaaagaaattttgccaatggactctctgagcattaaagggattcacctgatgaatagttattgtaattagtgttgcttagtttgcaattgtggcagttctcaatttgttagctttcttctagtttggcatggcaacctttgggagccaaccaaacagcccctatgtctcactattctgagtgtgtaaattcctccaggatgtaatacccactaattaacaaaataattttatgggatattaagaaattttgcaattcaatgaattcaccactaatttacaaaagaattttatgggacattaagaaattttgcaattcaatgaattcttaaagcactaaagggattcaccagataaataacgttggtaccaatgtgtttctttttcttcttttttttttgaagggattaatgtgtttctttgtttggaatcatggctattttcagtttgttcgcttccttctaattgatactacctattttgatctttaagagatatttactaaaaacggtgaacatactctcaactaactagcttgcatcagagtagcacattatagcaccaaactggaattttttcatattaggtcaggaagtacatcccatgactaatgccctactttggacaatatccaatattgctaaaacaattttgcatagttcccttttttaaaggcacacgaaacttgttgtaaacacatttgccttgtgcaatcgtttattgataattcttttcagcaggaagccatgatatagcaagagaggctcaaatgcgcgaattaactaagtctgttctgtattaatatttgcagttgttcttctataagccaaacctgtggtggccgaatggcatgggaaagcaatccttatacaatgttgagattggtgtggatgccaatggattcggtgaatctgattcatcgaatcatcattttggattccgtaagattgagagtacaattgatggttctaccggtgggaggtataactgattattttatgtgtctagtacagtacataatacttgagctcgtgaaaacgtgctattgccaaatatctcatctgcaggatcttcaaggtaaatggtgaacctgttttcatccgaggagggaactggatattgtcagatggccttcttcgattaacaaggaagcggtatatgactgacatcaagtttcatgctgatatgaactttaatatgcttcgctgttggggtggtggattagcagaaaggcctgatttttatcatttttgtgatatctatggtttgatggtatgcttaagtttcccttccatcattgtcaattgattggctgtatttcctcattcaagttacaatacattgggtcataataaagagtaataagtttctatgtatatacttgttgccttcttgaagcaatatcaattattctctacttctaggattcaggaaactgatcataatcactgttggaattcattgtcttgaatggatttgtaaaccagatatagtgttaaatgctcttctatattttagtggcagatttattatagttaaatccttagttattgttaacttatttcccctggttctgtggcatgttaaatgatactcaaaggatcaacaattatgtgcaggtttggcaggaattctggataactggagatgttgatggacgaggaattccaatatcaaatccaaatggtcctttggaccatgatctcttccttctatgtgctagagatactgtcaaattacttaggaatcatgctagcctagctctatgggttggtggaaatgaacaagtcccaccagttgacattaacaaagcactgaagaatgatctgaagttacatcctatgtttgtaagtaaccatacaacaaaaagtccaggaaaggatatatcagaagacccaactgacccaagtaaataccttgatggcactcgagtgtacgtccaaggatcaatgtgggatggttttgccaatgggaaaggcgactttactgatggtccatatgagattcaatatccagagagctttttcaaggacagtttctacaaatatgggtttaatcctgaagttgggtctgttggggttccagttgcagcaacaattagagcaacaatgccctcagaaggttggagcattccaatttttaagaagaggatcgatgggtacataaatgaagtaccaaatccaatatgggattaccacaagtacatcccctactcaaaaccagggaaagtccatgatcagattgaactgtatggccatccaagtgatctcgacgatttctgtgaaaaagtaattttggagtaccatccttttgtctccaggatatttatgcttcagtatcatatgtattttagtttcattgctaaattgtgtttttaaccttcaggcacaattggtcaattatgttcagtacagagcacttctggaaggatggacttctttcatgtggacaaagtttacaggtgttttaatttggaagacacaaaatccatggactgggctacgaggacagttctatgatcatctcctagatcaaacagctgggttttatggttgccgttgtgctgctgaaccaattcatgtacagctgaatttggatagttacttcatagaggtacatttctacaacttgcaaaatctgaacccaaccacacattctatgacataagcccatgaaaagtgactttttttctaggtggtaaacactacagccgatgaacttcgggatgtggctgtcgaaatttcagcatgggatctagatggcgcgtccccatattacagagttactgagaaaatagcagtgccaccaaaaaaagtgcagcaagtcacggagatgtcatatcctaagacgaagaacccaaagcctgtatattttctacttctcaaactttttaagctgtcagacaaccaggtactctccaggaacttttactggctacatcttcctggaaaagactacaagttgttggaacagtatcgtcagaaacagataccactgaagatcaactctaagatttccatctcaggctctggatacaaggtcagaatgtccatagagaacagatcaaagaaaccagaaaacgctaacgtatcaaccatgaatctagccgatgcaaacggttccgacagaaccggagaagaagccatccaggatggacatagcagtggcctgtgggggaaaatccgcagaggcctcatcatcacaaggtcagatgacaacgtaagaacagtggaggtgaaaggggccgattcaggcgtctcgtttttcctccatttctcggtacacacatctgagccatcatccagtcaggatgtttacaaggacacaagaatcctccctgtccactactccgacaactacttctccctcgtaccgggggagaagatggccatcgacatctcgttcgaggccccccagggatccacccccagggtcattctgaaaggctggaactatcacctggaccatgcagtgacgttatagtaagagtacttcaactagcctgtcaaaatgtggccgtgtcggggacgggacaagatcccacagagcaagtagtacatctccctacaataaagtgcaggtagcgacttcaaatcgtgacattgcatgagcagtgggtgtgaattatttgtggtgcccatcacctccgtgattccgtcagagacgatctcagacgctcaggctcctgcgttgttgacggtgtcggcgccaaccaacaacttgggtaaatgtttgtttgggccagaaccattaataaaagggtcaccgtagtacaatcatcgacccctgcatccagatgcagcgacgcaaacggggctagcatatgcatttctatccattttttctgctgccattcatttccattgaatctggacgagagaatcatggcattcctgttactccgatacttcctccgtctggcgtttgtaagactatcatacgggtagttgtgtaaacaaactaacagaggtcttttgtacggctctttgtaaagaaaatggaatctgtgtgctcctatt</dnaseqindica>

External Link(s)

NCBI Gene:Os05g0391500, RefSeq:Os05g0391500