Os05g0397900

From RiceWiki
Revision as of 10:20, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os05g0397900| Description = Kinesin, motor region domain containing protein| Version = NM_001062005.1 GI:115463740 GeneID:4338710| Length = 4255...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Gene Name

Os05g0397900

Description

Kinesin, motor region domain containing protein

Version

NM_001062005.1 GI:115463740 GeneID:4338710

Length

4255 bp

Definition

Oryza sativa Japonica Group Os05g0397900, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 5

Location

Chromosome 5:19366025..19370279

Sequence Coding Region

19366149..19366230,19366339..19366452,19366566..19366648,19366740..19366833,19366920..19367249
,19367472..19367751,19367853..19368014,19368192..19368407,19368516..19368553
,19368655..19368818,19368891..19369004,19369100..19369141,19369238..19370041

Expression

GEO Profiles:Os05g0397900

Genome Context

<gbrowseImage1> name=NC_008398:19366025..19370279 source=RiceChromosome05 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008398:19366025..19370279 source=RiceChromosome05 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggaagcagatccggccccatcctcgacgccgccgccctcctccccggcgcccgcggcttctccgtcccggcatcctccaggtgaggaaggaggaggggctgagcgcgtggaggtggaggagtacgtggatcccccgagcccagattgctgcggcggagccgacccggaccatgcgccgccgccgtcgccgaaaggtgaggagccggtggtgagcgctgaggaggagcaggcggcggttgcaggaggtgaaggggaggctcttcgcagcttcttggaggaatttggagaccaaggggatgattcccttgtcccgtcaccgaagctgaagcagataaacacccctgaccgcctcgctgctcttcgttttcttgggggaaagtataacagcttgttagagaggtacaagcagcaggtggctaagtgtgccgaggagtgtgcgccgaggtacgatggcttgaagaagaagtacgcagatgagtgtgcagaacggcgacgattatacaatgagctcattgaactgaggggtaacatcagggttttttgtcgatgccgccctctaagcactgctgagatctccaatgggtgttcatctatagttcagatcgatccatcccatgagactgagctgcagtttgttccatctgataaagacaggaaggcttttaagtttgatcatgtttttggaccatctgacaatcaagagactgtctttgctgaaagcttgcctgttgtgcggtctgtcatggacggtttcaacgtatgcatctttgcatatggacaaactggaactgggaaaaccttcaccatggaagggattccagaggataggggtgttaactacagagcattggaagaattattcaggttgtctgaagaaagaagctcttctgttgcctacacatttgctgtgagcattttggaagtctataatgaaaaaatcagggatcttctagatgaaagctctgagcaaacaggaagaaaattggacataaagcaaactgctgatggaacacaagaggtggctggtttgattgaagctccaatttatactatagatggtgtttgggagaaactgaaagttggagctaaaaatagatcggttggagcaactagtgccaatgaactaagcagccgctctcatagcttggttaaggttaccgtcaggagtgagcatctggtgacagggcaaaagtggaggagccatatctggttggtcgacctagctggaagtgagcgtgtgaataaaacagaagtagaaggggacaggctaaaggagtcacagttcataaacaagtcgctctctgctttgggcgatgttatttctgcccttgcctcaaaaaatgcacacattccttatagaaattccaagttgactcatctgctccaaagctctttaggtggggattgcaagacactcatgttcgtgcagataagtccaagttctgcagactcgggagagactctctgctcacttaactttgctagtagagttagagctatagatcatggccctgctcgtaaacaagcagatccagctgaaacttttaagctcaagcagatgacagagaaaattcgtcatgaggagaaggaaaatgcaaagttacttgaaagcttgcaactgacgcagcttaagtatgcttctcgagagaatgtcatcaagacacttcaagagaagataagggaggctgaacaaacgtccaaaacttatcagcagcgggttagagagctagaaaatgaattagccaatgagaagaaggctgccagggatacagctagatcaacaaagccaccacttgctcctatgaggcagagaccacctcttggaagaattggcaatcacattccacctaaggctcctcttagactgaggctcagtaaagcacccacaattcaaaataaagagaacattcctgtcatgttgaacaaaggatcctctggggctgataccagcaaggctgttgctggcaaggcacggcgagtttctctgactcctgtgattcgacacatacctctgcagcccaagaggcgatcctcactcgcggtactaccaacccagagagaacagctgtccatatttcctgataagagatcagtgtcccgtctgtcccatattcagatgccaaggagatcaattgcaacatttaattcaattccagcaacaccattagcagctgctgcacataaacaggttgatggcaccccagaagcacggcaattgaggagaatcgagttcagcagtagcaagttcagaagccctccagcgctggccaggttcaactcaaggaataacgccttgtcacctcagcagaagctgcggctagcatctggctcaggaaatgccagcaaaatatgcttcagtgttcagaagagagtgatcctaggttcacctgctccagtgaaaagcagtctgctctctggtactggcatcttcaatccagctctgcgcgagaaaatgatggcggcgaaaatagggaatgcgcagcgcgtgttcaacaccaacaggaggaagtctgtcctctga</cdnaseq>

Protein Sequence

<aaseq>MEADPAPSSTPPPSSPAPAASPSRHPPGEEGGGAERVEVEEYVD PPSPDCCGGADPDHAPPPSPKGEEPVVSAEEEQAAVAGGEGEALRSFLEEFGDQGDDS LVPSPKLKQINTPDRLAALRFLGGKYNSLLERYKQQVAKCAEECAPRYDGLKKKYADE CAERRRLYNELIELRGNIRVFCRCRPLSTAEISNGCSSIVQIDPSHETELQFVPSDKD RKAFKFDHVFGPSDNQETVFAESLPVVRSVMDGFNVCIFAYGQTGTGKTFTMEGIPED RGVNYRALEELFRLSEERSSSVAYTFAVSILEVYNEKIRDLLDESSEQTGRKLDIKQT ADGTQEVAGLIEAPIYTIDGVWEKLKVGAKNRSVGATSANELSSRSHSLVKVTVRSEH LVTGQKWRSHIWLVDLAGSERVNKTEVEGDRLKESQFINKSLSALGDVISALASKNAH IPYRNSKLTHLLQSSLGGDCKTLMFVQISPSSADSGETLCSLNFASRVRAIDHGPARK QADPAETFKLKQMTEKIRHEEKENAKLLESLQLTQLKYASRENVIKTLQEKIREAEQT SKTYQQRVRELENELANEKKAARDTARSTKPPLAPMRQRPPLGRIGNHIPPKAPLRLR LSKAPTIQNKENIPVMLNKGSSGADTSKAVAGKARRVSLTPVIRHIPLQPKRRSSLAV LPTQREQLSIFPDKRSVSRLSHIQMPRRSIATFNSIPATPLAAAAHKQVDGTPEARQL RRIEFSSSKFRSPPALARFNSRNNALSPQQKLRLASGSGNASKICFSVQKRVILGSPA PVKSSLLSGTGIFNPALREKMMAAKIGNAQRVFNTNRRKSVL</aaseq>

Gene Sequence

<dnaseqindica>125..206#315..428#542..624#716..809#896..1225#1448..1727#1829..1990#2168..2383#2492..2529#2631..2794#2867..2980#3076..3117#3214..4017#aatcaaatccgctcctcccatttcccctctcccccaaactcctcctcgtctcctcctccgctcccccaaccaaatccccaattccgcaccaccccgagcgcggcgacggaagcagatcgcggcgatggaagcagatccggccccatcctcgacgccgccgccctcctccccggcgcccgcggcttctccgtcccggcatcctccaggtacgcgcgtgcttcgtggttccgtgaggggcgggtggaggaatgggtgggctagggttttttgtgggttcgtgtctcaaggtgtgtcctgactcttttttttggcaggtgaggaaggaggaggggctgagcgcgtggaggtggaggagtacgtggatcccccgagcccagattgctgcggcggagccgacccggaccatgcgccgccgccgtcgccgaaaggttgggtgccttgtcctgtagcgtataagcgattattagggcttaatttttgtttgtctcatggtgcggcgagggcttgttttgtattctgtctcatggtggcaaaatgtcaggtgaggagccggtggtgagcgctgaggaggagcaggcggcggttgcaggaggtgaaggggaggctcttcgcagcttcttggaggtgggaaattttggtgttcttgctcaaagatctgttaggttttctgtactccgtgctttgtttctgatttgtagggttctatttcttgcaggaatttggagaccaaggggatgattcccttgtcccgtcaccgaagctgaagcagataaacacccctgaccgcctcgctgctcttcgttttcttggtacaccttgcacaatgaaatatactttttaccttgctcatggaggttatctgcatctagagtcatgattggtatgtgtgttgtagggggaaagtataacagcttgttagagaggtacaagcagcaggtggctaagtgtgccgaggagtgtgcgccgaggtacgatggcttgaagaagaagtacgcagatgagtgtgcagaacggcgacgattatacaatgagctcattgaactgaggggtaacatcagggttttttgtcgatgccgccctctaagcactgctgagatctccaatgggtgttcatctatagttcagatcgatccatcccatgagactgagctgcagtttgttccatctgataaagacaggaaggcttttaagtttgatcatgtttttggaccatctgacaatcaaggtatgataatttgcttttctttgtacagtccatttacatattttgtgggaagatacaaaaaacatcgtgtcaaatactataattatactgcaatcatagtttggttgaacagaagacattttctctgtttcttacggcacatcttgggacatgattatatgttgaaagatatgaatcatattctgtttctttaatgcactatgatcaatgtttttctttcagagactgtctttgctgaaagcttgcctgttgtgcggtctgtcatggacggtttcaacgtatgcatctttgcatatggacaaactggaactgggaaaaccttcaccatggaagggattccagaggataggggtgttaactacagagcattggaagaattattcaggttgtctgaagaaagaagctcttctgttgcctacacatttgctgtgagcattttggaagtctataatgaaaaaatcagggatcttctagatgaaagctctgagcaaacaggaagaaagtatatttcctttgtcccatttatttgatagtatccatttaatactgatttgtaattaatctattcaattttaacacacaatatccttgttctatgcaaagattggacataaagcaaactgctgatggaacacaagaggtggctggtttgattgaagctccaatttatactatagatggtgtttgggagaaactgaaagttggagctaaaaatagatcggttggagcaactagtgccaatgaactaagcagccgctctcataggtgaggctttttgtgtttcattgacagtatccctttaaagtaatttaacttatatattagaatttgctgctatttttcaatgttgataatagatcatcctcaattaaaagtgtgcttctacaacgttattgtaatgataatttgatgatggtatttgtggttctgttctatatgcagcttggttaaggttaccgtcaggagtgagcatctggtgacagggcaaaagtggaggagccatatctggttggtcgacctagctggaagtgagcgtgtgaataaaacagaagtagaaggggacaggctaaaggagtcacagttcataaacaagtcgctctctgctttgggcgatgttatttctgcccttgcctcaaaaaatgcacacattccttataggtcagtaatatttaatatctttagaattaaacatctgtattgtccagctacttcaagaactatagcttcatctcagtctcaccactgtttacctttttctgtcaatagaaattccaagttgactcatctgctccaaagctctttaggtaagttcaatttttctggtaccaattgttcttaaaaattcttttattgaattagcaaattagcaagtagatagattactcatgatggttggcttgtacaggtggggattgcaagacactcatgttcgtgcagataagtccaagttctgcagactcgggagagactctctgctcacttaactttgctagtagagttagagctatagatcatggccctgctcgtaaacaagcagatccagctgaaacttttaagctcaagcagatggtaatttgattctttcaatactaaaaaattacgatgcaacttaactgatactaactggaaacatcatttcagacagagaaaattcgtcatgaggagaaggaaaatgcaaagttacttgaaagcttgcaactgacgcagcttaagtatgcttctcgagagaatgtcatcaagacacttcaagagaaggtatgttggctagattcattgttattctcttggatggccttgcatatcttatgaaacaaaatgctggcaaataacccgacgaatattgtgaacagataagggaggctgaacaaacgtccaaaacttatcagcagcgggtaagtaggataaccacttctgtttaattcatcagagaccagattctgcatgcatttgaatattcttatctgtgcgtgacattttcttttgtacaggttagagagctagaaaatgaattagccaatgagaagaaggctgccagggatacagctagatcaacaaagccaccacttgctcctatgaggcagagaccacctcttggaagaattggcaatcacattccacctaaggctcctcttagactgaggctcagtaaagcacccacaattcaaaataaagagaacattcctgtcatgttgaacaaaggatcctctggggctgataccagcaaggctgttgctggcaaggcacggcgagtttctctgactcctgtgattcgacacatacctctgcagcccaagaggcgatcctcactcgcggtactaccaacccagagagaacagctgtccatatttcctgataagagatcagtgtcccgtctgtcccatattcagatgccaaggagatcaattgcaacatttaattcaattccagcaacaccattagcagctgctgcacataaacaggttgatggcaccccagaagcacggcaattgaggagaatcgagttcagcagtagcaagttcagaagccctccagcgctggccaggttcaactcaaggaataacgccttgtcacctcagcagaagctgcggctagcatctggctcaggaaatgccagcaaaatatgcttcagtgttcagaagagagtgatcctaggttcacctgctccagtgaaaagcagtctgctctctggtactggcatcttcaatccagctctgcgcgagaaaatgatggcggcgaaaatagggaatgcgcagcgcgtgttcaacaccaacaggaggaagtctgtcctctgaagtaccttttccagaccagaactgaagaccaatgtttggatgttcaaacagtgatgcagagtaggaatgttgacgattactttgtttaacccgttgaaagccatccatctgtactcgtggctttgtgttgataaaatgtctgtgataagggttgtacccattcatcagttcttttcttaaaatgattgatgttagtgttccttgatatttttttattgtataaattcgttacagttgc</dnaseqindica>

External Link(s)

NCBI Gene:Os05g0397900, RefSeq:Os05g0397900