Os05g0399100

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Revision as of 10:20, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os05g0399100| Description = Similar to Endo-1,3| Version = NM_001062009.1 GI:115463748 GeneID:4338716| Length = 3935 bp| Definition = Oryza sat...")
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Gene Name

Os05g0399100

Description

Similar to Endo-1,3

Version

NM_001062009.1 GI:115463748 GeneID:4338716

Length

3935 bp

Definition

Oryza sativa Japonica Group Os05g0399100, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 5

Location

Chromosome 5:19416397..19420331

Sequence Coding Region

19416479..19416761,19416863..19416884,19417846..19417972,19418872..19418962,19419066..19419155
,19419252..19419352,19420003..19420143

Expression

GEO Profiles:Os05g0399100

Genome Context

<gbrowseImage1> name=NC_008398:19416397..19420331 source=RiceChromosome05 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008398:19416397..19420331 source=RiceChromosome05 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>aatttcctgctctgcaatccgtcgcaatcaagcggccgctttccgaggccccgggctcccttcccttcgcatttatcctcgctgagactcgagaaacaccgcgaccaggagaaatttcagcaggagcaggcgatggcgagcccgcagtgctgcgcgaacccaccgacgctgaacccggccggcggggaggggaaggtggtggagagcttcggcgggatcaaggcgtacgtcgccggcgccgcggagtccaaggccgccgtcgtcctcatctccgatgtcttcgggtttgaagcgccgaacctgaggaagatagccgacaaagttgcctcgtctggatactttgttgtggtgccagatttcttacatggggatcctttagtacctgaaagtactgagaaaccgtttcaaatgtggataaaagaacatggcccggacaaagcatttgaagaggcgaaaccaattattgccgctctgaaggagaaaggagtgtctagtattggggctgtaggttattgctggggtgcaaaggtggtggtagagttagtgaaagctcatgagatccaggctgctgtgatgtgtcacccctcttttgtgactgttgatgatatgaaagaggtcaaatgcccaattgctatacttggagctgaaattgatcgtatgtccccaccagaagtggtgaagcagttcgagcaggttctttcttcaaagtcagggattggccactttgtcaagatcttccctggggttgaacatggatggactgtgagatacaagaatgatgatgcagctgctgtcaagagcgccgaggaagccctggcggacatgattgactggtttaataagaacctgaagtga</cdnaseq>

Protein Sequence

<aaseq>NFLLCNPSQSSGRFPRPRAPFPSHLSSLRLEKHRDQEKFQQEQA MASPQCCANPPTLNPAGGEGKVVESFGGIKAYVAGAAESKAAVVLISDVFGFEAPNLR KIADKVASSGYFVVVPDFLHGDPLVPESTEKPFQMWIKEHGPDKAFEEAKPIIAALKE KGVSSIGAVGYCWGAKVVVELVKAHEIQAAVMCHPSFVTVDDMKEVKCPIAILGAEID RMSPPEVVKQFEQVLSSKSGIGHFVKIFPGVEHGWTVRYKNDDAAAVKSAEEALADMI DWFNKNLK</aaseq>

Gene Sequence

<dnaseqindica>83..365#467..488#1450..1576#2476..2566#2670..2759#2856..2956#3607..3747#gattccggaacttgtccaccacaccacctcgttgctcgcatctcttcctgatcccccccgttggattcgattcggggcgtaaaatttcctgctctgcaatccgtcgcaatcaagcggccgctttccgaggccccgggctcccttcccttcgcatttatcctcgctgagactcgagaaacaccgcgaccaggagaaatttcagcaggagcaggcgatggcgagcccgcagtgctgcgcgaacccaccgacgctgaacccggccggcggggaggggaaggtggtggagagcttcggcgggatcaaggcgtacgtcgccggcgccgcggagtccaaggccgccgtcgtcctcatctccgatgtcttcggtgagtgatcccctcctcctcccatattttgttcttcttctttatctctttgtttcgttactgttccgttctcgttaaagttaggtcttcttctctttcagggtttgaagcgccgaacctgaggtacagatctttgtgttatctgatagtactagtttttcgattccacctgtacaggatatgccactgttctgatatattttgggggaaatggattatcgattcccacctatacaggatatgccactgttcctatatagtttgggaaatgaattattcattattgggttgttagaaacttcgaaggtcttccgggcactttggggctgactgatgcccataccgtgtgctgggatttttcacatggttaataagtttttttttcaggggaggttggggggggggggtgtggaatttaaccacaattttgatgatgacatatgtgcactctttgaggtgtttcagcctgcagtagtaacttgtaagcattgtctgatgctatgacctatactatggaacctgatgtaattgcttatctcagaaaggaagatatacagccgacagagtttgctgcgctgggattttgatatgattttaaaatttgagtaaatttcacaaaactacagatatattggctaaatcattgcaaaactacatatttaagatattgtatcacaaaattacagatttaacaccaaaattatcacaaaactacatgtttaaggctaagtatcacaaaactacaggtttaacatcaatttaattacagaatttggatatttattagtgctaaggatttaaaccccaacatctttagttttttgataattttattattaaatctatagttttacgatatttagccttaaaacttgtagttgtggtaaatttttcgttaaatctatagttttgtgatacatcaccttaaatctatagttttgtgaaatttactcttaaaattttgaaaagtttaagttcaattttcatgatggcatgtgcctctttgaagtactctagttgtcttaagcgctaattgtctgctacctactgtggaagttgatgagtaatcacttatctcttgaaggaagatagccgacaaagttgcctcgtctggatactttgttgtggtgccagatttcttacatggggatcctttagtacctgaaagtactgagaaaccgtttcaaatgtggataaaagaacatggcccggtttgttattctcccctgaaattacattccacttctcactgttttttttggtattttggaaaattattcaggttcccctgtttcatttttttcttgatgctatatgttctcaaatagtttttattgcctcatgtggatgccagaaatttcatactagcgcatactgtagtttctttaaatgtaatgttcggtgtatataaaagtaccactgtaccagttcattttgtaggtgtatacaggatctttcgttcgattataaccatcatgagcctataaatgccttagctatacatctttctggcttctaaacacctattatattattaagagggaaaaaatgagccatcatatttgctctagtagcctagaaattaccacgttaattggagaaaaagagaaagatattcggcgtttgatcatgatggcaaattataatggtgtagattgatcgatatagttatatacaaagtacagtaatagttatggaaacagaagcaagaatgcaagatttgtatactaaatctaattctacttattaagttatttccatacaaaacttcataaggaaatgtgctagtagtttgtatttttatcttcccttgtttgcaaaagcttgattagacataccttaccgactatatttcctttgtaactaagggatgcaaggtggatggttcatgggtgcccattgacccatgcttgtgccttgtcccctccatttagttgtatacactatatgaactagcaaatgactaaagagcgcacttttagttagatggaataagtcaatgtttacccatgagtgggtaaacttttatccctacctttgtttgttcatctttcagtatttcaccgtctattgaaaatatcatccaataacatgcttttcctttttacaggacaaagcatttgaagaggcgaaaccaattattgccgctctgaaggagaaaggagtgtctagtattggggctgtaggttattgctggggtggtaagtgctttcttttgtctattgtgtttttgtaattctgatgtagaatttgaaggtttagcctgctaactgtgagtgtcatgtcacttctttcatggatcagcaaaggtggtggtagagttagtgaaagctcatgagatccaggctgctgtgatgtgtcacccctcttttgtgactgttgatgatatgaaaggtctaggtcccttttgaattttgtagatgcacagtgttctcttgtagatggtttgatacttactctatgtctatggcatggactacctaatttcagaggtcaaatgcccaattgctatacttggagctgaaattgatcgtatgtccccaccagaagtggtgaagcagttcgagcaggttctttcttcaaagtcaggggtaagttctcaatcatgaaagttgatcatcgggacaaacatttatgggttttaggttttccagatataacttattctaaagtaagttctcaagatttaccatagtgccaaactgtcacattatagtacatattctgattctgattttgatgtcctaccaaatcatgcctttggtttttcctttttccaaagatccagcaattgtggtgtttgtattagaagaatagcaagtctttccaacaagtatgccttagcttttgatattggaaatactcggcctccttttgtgattaaaagccatgtaggagtgatgcaatgaaatcaatccacgtaggagtgatgcaatgaaatcaatctttcacctttcttgtccccgttgtttctataatacggcggtgttgtccagctgaagatttttgttcttaaccagtgaaacatagacatacattcactgaagccggtgaaaatcactactatacgaaataggcaggacaagttaaggagaagaattgtaaaatttagtggtttatagagaaattggagaaacacattagcgagagtagattgctgaaacacattagcgagaggagattgctttaaagctcctatggtggtttttcattctgacaatgaactttgttgcgcacgcagattggccactttgtcaagatcttccctggggttgaacatggatggactgtgagatacaagaatgatgatgcagctgctgtcaagagcgccgaggaagccctggcggacatgattgactggtttaataagaacctgaagtgaatttgacatatccgctgtccacgatcggtttgtgtattgctcatgtttcatcgcaagcatcctgaatttacggttgagtagccttcccattatgtttgtgctagtagtgtatatgctttgcttgtgttaggaatttgctttgtgtcaacctgaacttccacttctgtaataaaaatggatgggcgagc</dnaseqindica>

External Link(s)

NCBI Gene:Os05g0399100, RefSeq:Os05g0399100