Os07g0528900

From RiceWiki
Revision as of 20:37, 22 July 2012 by 124.16.129.48 (talk)
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Function

Please input function information here.

Expression

Please input expression information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this gene

Please input related labs here.

References

Please input cited references here.

Structured Information

Gene Name

Os07g0528900

Description

Similar to Syntaxin 132 (AtSYP132)

Version

NM_001066373.2 GI:297607354 GeneID:4343440

Length

3209 bp

Definition

Oryza sativa Japonica Group Os07g0528900, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 7

Location

Chromosome 7:21348395..21351603

Sequence Coding Region

21348395..21348412,21348815..21348904,21349026..21349082,21349207..21349255,21349360..21349448
,21349533..21349594,21349892..21349934,21350017..21350077,21350280..21350305
,21350394..21350471,21350583..21350663,21350782..21350847,21350964..21351121
,21351570..21351603

Expression

GEO Profiles:Os07g0528900

Genome Context

<gbrowseImage1> name=NC_008400:21348395..21351603 source=RiceChromosome07 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008400:21348395..21351603 source=RiceChromosome07 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgaacaatcttctgacgaattcttttgaatcggagagggacatcgagatggggtatcaaaattcaaagaataaatcggattatgggcttgaggatttcttccaggaggttcaggagattgagacgttgttggacaagatgtccaatataaaccacaaacttcaggaagccaatgaggaatcaaaatccgtcactaaggcttccgaaatgaaagcaatcaacaagcgcatggagaaagatatcaatgaagttgggaaaattacacgcaccataaaagtgaagttggaggagatggataggaataatcttgaaaacagaaaaaagcaagggtgtgaaaagggcacaggcgtagaccgatcaaggattgcgctgaaaaataaactcaaagaaagaatgaaaaatttccagaatctaagacaaattattcaagatgagtaccgacaaggcgttgcgaggatggttttcacagtcactggagagcagccttctgatcaggtgattgaccacctgattgagaccggcagcagtgagcagatatttgagaaagcgattcagggaattgggagagggcagataatagccacggttaaagaaatccatgaaaggcatgatgtagtcatggaaattgaaaaaaaacttcttgaattgcaacagatttttgcggatatggcaacactcgtcgacgcacaaggagagacattgaacgacatagagaaccaggttcaaaatgctgtggaccatatacaacgtggtacaggagagctgcgcacagctaagagactgcagaagaagtcaaggaagtgcatgttcatcgcaatcatcatactcctggtcattgcagctattgtcgttctttcaatcttaaagccctgggctaattcagtctgtaaagtatcaaggctccttggctga</cdnaseq>

Protein Sequence

<aaseq>MNNLLTNSFESERDIEMGYQNSKNKSDYGLEDFFQEVQEIETLL DKMSNINHKLQEANEESKSVTKASEMKAINKRMEKDINEVGKITRTIKVKLEEMDRNN LENRKKQGCEKGTGVDRSRIALKNKLKERMKNFQNLRQIIQDEYRQGVARMVFTVTGE QPSDQVIDHLIETGSSEQIFEKAIQGIGRGQIIATVKEIHERHDVVMEIEKKLLELQQ IFADMATLVDAQGETLNDIENQVQNAVDHIQRGTGELRTAKRLQKKSRKCMFIAIIIL LVIAAIVVLSILKPWANSVCKVSRLLG</aaseq>

Gene Sequence

<dnaseqindica>1..18#421..510#632..688#813..861#966..1054#1139..1200#1498..1540#1623..1683#1886..1911#2000..2077#2189..2269#2388..2453#2570..2727#3176..3209#atgaacaatcttctgacggtaatgttcttacttcataggattattacgattatttttctgcgaaaagatgctatcattatgcttccttctttcttgtgattttgatgttctcttgatggagaaacagttgattagagaacaaattttcataggtcgtgccaatctgctttatgaattatgatcccttctctgccagtttcatcctgggccagtaatttggctggatgcaaaatcctgaaccttcttttcaaagtttaggataaactgatcaaattatagggctttgatggctgatgattgtccttctgtcatagaagttgtaaacgattcaaacttataattatgttagggttgatacatatgctaattccataatatttccttgcttacatcactattgacctttcaacttgattgtagaattcttttgaatcggagagggacatcgagatggggtatcaaaattcaaagaataaatcggattatgggcttgaggatttcttccaggaggtatcataacaattttatccacaccaagattctgatgcactattgtctatgattttgtagccatgagtgctaatttcacaaaatgatgatgaaatcttctgattgtgttctgttgaattaggttcaggagattgagacgttgttggacaagatgtccaatataaaccacaaacttcaggtatacttaattcctttccaacattttgtcaaaagagttaattgtccatgacaatatttttcttacgtttcccccattaccatactatggagttggagaattgatacattcttatcaactataggaagccaatgaggaatcaaaatccgtcactaaggcttccgaaatgaaaggttgcaaacgtcaattaatctgttgattgatctgcatatatagctaagtttcagagtagaatgatcatactaatgcattcatctgaaataaaaacacattccagcaatcaacaagcgcatggagaaagatatcaatgaagttgggaaaattacacgcaccataaaagtgaagttggaggagatggataggaatgtaaggattttagcatgtctactaatctgcactactatgtgaattagcccagttctcacgatctcacttgttttctgattgcagaatcttgaaaacagaaaaaagcaagggtgtgaaaagggcacaggcgtagaccgatcaaggatgtcaatgaccatgtaaggtgttcatacatttcttcagtaaatttaataatttggaagatataatcagatatgtttgatatcaagacaagataaattaaattcggcatgattgacattgatcattgacccaccaccaaaaaaagaattgtgacatattttgagtaaaattggtttgttaggtctattatcagatcactgtagtcccaaagtatttgtaaagtttaagaaacaattccatattttgcttgttcaacataacaaaagaggtgaattttgattggttcttgttgattgcagtgcgctgaaaaataaactcaaagaaagaatgaaaaatttccaggtaaactttctagcttattatccatcttctatgagaaaacaaattgaagagcttgcagtacagtaatccacatttcatacagaatctaagacaaattattcaagatgagtaccgacaaggcgttgcgaggatggttttcacaggtaaggagttcttttttcaagtcgttttacgttctttctgataaatatttccttcgttctagaatgtaaggtgttttggtttgtcttggagtagtttgacttagaacaaatccaaaacaacttccattctgaaacggagagagtataatttacttcaagctattctatcacatgcttcttgataaacctgaatcttgaacagtcactggagagcagccttctgatcaggtgaggacagtagtgctactacgcttggtgttgagagatgctttctcctctgatctcattgtggttaaaaaaaaaaaaacatgactaggtgattgaccacctgattgagaccggcagcagtgagcagatatttgagaaagcgattcagggaattgggagagggcaggttgaatatcgtgttcagcttcaccagtacattatatgttccttccatgtcattaaggctggcaattcttacaatagtgctcaaatgtttcataattgcacatacttacagataatagccacggttaaagaaatccatgaaaggcatgatgtagtcatggaaattgaaaaaaaacttcttgaattgcaacaggtagctttggcaagattgcacgtttgttcttcagaattgagctcatataatcaatggactaactatatcccatatcactaattatctctttattatgacttcttccacctgctgtcagatttttgcggatatggcaacactcgtcgacgcacaaggagagacattgaacgacatagagaaccaggtttgcaatctccctccattttgttgccgaacttactgaaaactcaaaagacaattaacgaatgtggctggaaatatttcgccttgttagcttgataatgagtttaaaactctcaggttcaaaatgctgtggaccatatacaacgtggtacaggagagctgcgcacagctaagagactgcagaagaagtcaaggaagtgcatgttcatcgcaatcatcatactcctggtcattgcagctattgtcgttctttcaatcttaaagccctgggctaagtagaaaactagaaaaacaatcgatattactagcattttcgtatgaacacagtgcacaacctcctttgaacatttcagacaccctcctttgaacaagtgctctgctttgtaaccatcccgttgcacaagaaattaccactgtttttgaagctgatgcttcaggatttagataaatttgggcaatatacattatcaagaaagagaaaaaaagtttttactaaataattcatttgcaaacacttcttttatgaacttgagaattctctgtaaatgcataacagtactgtatgtgcccaatttttgcatctaggtgcaaaaaatactttctgtgataaactcacagatcaattacattttaccccaaactgattgttccattttgagtcataactcaatcattcatatatactgtaactatatgtaattagttgatccgtgcgtgctgtagttcagtctgtaaagtatcaaggctccttggctga</dnaseqindica>

External Link(s)

NCBI Gene:Os07g0528900, RefSeq:Os07g0528900