Os07g0577900

From RiceWiki
Revision as of 20:38, 22 July 2012 by 124.16.129.48 (talk)
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Function

Please input function information here.

Expression

Please input expression information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this gene

Please input related labs here.

References

Please input cited references here.

Structured Information

Gene Name

Os07g0577900

Description

Target SNARE coiled-coil region domain containing protein

Version

NM_001066627.1 GI:115472986 GeneID:4343711

Length

2335 bp

Definition

Oryza sativa Japonica Group Os07g0577900, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 7

Location

Chromosome 7:24031709..24034043

Sequence Coding Region

24031924..24032085,24032538..24032594,24033596..24033701,24033850..24033890

Expression

GEO Profiles:Os07g0577900

Genome Context

<gbrowseImage1> name=NC_008400:24031709..24034043 source=RiceChromosome07 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008400:24031709..24034043 source=RiceChromosome07 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggcgaacccgctgcacggctcgggtccgcttcgatccaggaatgcgtcgagctcggacgagatccagctgcggatcgatccggtgcacggcgatcttgatgaggagatcgatgggctgcactcgagggttcgcctactgaaaggcgtggcccaggagataaatgctgaagccaagttccagaatgatttcctcagccaactgcaaatgaccctcataaaagctcaggctggagtgaagcataacatgcgaaggatgaacaagagcatcatccaacagggctcgaatcatgttgtgcacgtggtcctttttgctctgttttgcttcttcgttgtctatctcttgtcaaagttctctagaagataa</cdnaseq>

Protein Sequence

<aaseq>MANPLHGSGPLRSRNASSSDEIQLRIDPVHGDLDEEIDGLHSRV RLLKGVAQEINAEAKFQNDFLSQLQMTLIKAQAGVKHNMRRMNKSIIQQGSNHVVHVV LFALFCFFVVYLLSKFSRR</aaseq>

Gene Sequence

<dnaseqindica>1959..2120#1450..1506#343..448#154..194#ctctcctccatcctcccctccggcctccacccgccgtcgtccgtcgccgttgcgcgcgcgccaccccctccctccttcccgtgcgccgccgcctcgtcgttccatctaagtcgcgagggaacgagctgaaccccatctgcgctggtaagcgcgatggcgaacccgctgcacggctcgggtccgcttcgatccaggtaaaacccgcacccacagccagcgaattttcgttcgatccaatcttgcgccggtggcgtccgaatccctcgtctttgctccggagaactgaatcgagtccctgataactttggggggttgtcggggttctttcggtattgattgcaggaatgcgtcgagctcggacgagatccagctgcggatcgatccggtgcacggcgatcttgatgaggagatcgatgggctgcactcgagggttcgcctactgaaaggcgtaagatttccatttctctccatccttgtttctttctgtttttttttaatttctgttaggtatgctcaattgtggactttttgccattatttgcaagttagaggtctattggtttgtgtgtgcatttgaactttagacctgctcccaatatgttcaggtgttaatatgcagtgctgtaagataaactttgtgcttctcaaatgtttgattcgtaatttgatcgatcaactatattgtttcttgtgcgtctcatcttgtcagtttgttttatacttgatataatcttcaaactaaggagcaagggctgcttgcctgcttctttgatatatgttgttaatatcaataccatatgttaagttacaaaatggttgttgtctaggttgtttcaatgatgtgatggcattttcgacactgatatgatgtcaaactccgattaggtgatcaggacattgtcttgatctatttattagtttacataattattacattgcagtgttccatctgctcttttattttcttttgcttgcttggcactagtgacctatcaattgtaagagccgtagtttggtcatcccctaagtattttttttctctacaactaaacatctaaaagaaatattgttgtaaatcccgaactcatggagagttaagaatttataaaggttctttagatatttacttttagcaaaataaatccttcttgtacgtccaaactaaggctcctatagtgacatggtacttaatattgtctttgttgttatgagcattatgtaatttcattgaaccttcatatggaattgcaccttttgtattaggccgctgtacaatcccataaattatgtgtacatgttatgccagatttcaaccagtaacgagtatgactttataagaaaatccttcaagttatgattttttttttcctttgttcataagctgttgatcttgggttctgttcacatttctgggcgctcagtttgtgaggcttgattgattttttccaggtggcccaggagataaatgctgaagccaagttccagaatgatttcctcagccaactggtactatgtcttgccttttcctttaagcttgtggtcatgacatgttttcctctggtaaataaatatttgttggccttatggctatgtctttttttaccttgatagtggcatgcatttaacccttcatttccttttcctttgtgaatttgtctagcctatccatgccttatgcctaactatcaggatgtatgcttcagagatatttacctatactatttctacatgcttcttcatgtgaaagtatacagatatccatgtttggagttccatttgttctgagttcaattgttgtatatagtcttgaatctattttctttcatgagttgttgtaatatcattctatagttgaatgatgttactgcaatcgcaacagtggattttcttcatgttttctccaacaataatataaatcctagttattctctgatttttgttatcctttttgtggacagcaaatgaccctcataaaagctcaggctggagtgaagcataacatgcgaaggatgaacaagagcatcatccaacagggctcgaatcatgttgtgcacgtggtcctttttgctctgttttgcttcttcgttgtctatctcttgtcaaagttctctagaagataataacactgttagacatatggctataagatagttgagttctgtcaacctagtgaccatgagggtataccattggttttaacttgtatactacatatggacacatctctgaagtttatgtaatggcttctgtgatatggatataatatatcctgacataggtatgttactctatggattaatgcatacaagctatactcttaattccagtttttctt</dnaseqindica>

External Link(s)

NCBI Gene:Os07g0577900, RefSeq:Os07g0577900