Os05g0409800

From RiceWiki
Revision as of 10:21, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os05g0409800| Description = Tetratricopeptide-like helical domain containing protein| Version = NM_001062065.1 GI:115463860 GeneID:4338774| Leng...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Gene Name

Os05g0409800

Description

Tetratricopeptide-like helical domain containing protein

Version

NM_001062065.1 GI:115463860 GeneID:4338774

Length

1206 bp

Definition

Oryza sativa Japonica Group Os05g0409800, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 5

Location

Chromosome 5:20034962..20036167

Sequence Coding Region

20034962..20036167

Expression

GEO Profiles:Os05g0409800

Genome Context

<gbrowseImage1> name=NC_008398:20034962..20036167 source=RiceChromosome05 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008398:20034962..20036167 source=RiceChromosome05 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgccgccgcccgcccccgcccccgccacgctcgcctccctcagcgcgctcgtcacctcgctcgcgcgctcgggccgccccgcggacgcgctgcgcgccttccgcgacatgctcgcgcggggtgtgccgcccgaccacttcaccctcccacctgtcctccgctcctgcgcgctcaccggctcgtcgccgctcgccgcctccgcccacgcgctggccctcaagatcggggcccagggtaacctcttcgtggcgtccgcgctggtgctctgctactcgggcctgtccaacctccccgacgcccggaggctgttcgacggaatgcgcgagcgagacgccgtcctgtggacctccatgctgtccgcgtacgctcagggcgggcatcccgaggcggcgctgcggttcttccaggggatggtggcggccagggtgcagcttgacgcggtggtcatggtcagctcacttctcgcctgcggacagattgggtggcgccgccacgggaggagtgttcacgcatgctgcattcggaggctccctgggatgcctctgtcgcttgggaacgcgctcgtggacatgtacgttaagtgcggagaatttgcgttcgccgagagggtgttcgcagggatgcccaggcgggatgttatatcctggagtgcgcttattcttggccatggtctgaatgggcgttctgatgttgcattgaggctttttgatgaaatggctgctgagggagtgagaccgaactctgtcacttttcttggggcactgtcagcttgtgcgcattctggcatggttgacaaagcttatgcaatattcgaggggatgaaacggcatggcgtgaaacctgagctcaaacactactcttgcatggctgatgcgctaggaagggatggccgtgttgttgctgcagttaagctcatagaggaaatgcctttcgagcctgatgaggccatgcttggaggtgtattagcagcctgccgagtgcatggggaaatggaagctgctgaacgaatttcaaagaagttgatgggcatgtcaccttcaaagagtggttacttcatgagcttggcaaacatatattcagatgctgggaggtatagtgatgcagagagaataagaggcttcatgaaggaagtaaaagttgacaagcttcctggatatagttcagttgaatttgatgttaatgtctctgaaccaagatctggatga</cdnaseq>

Protein Sequence

<aaseq>MPPPAPAPATLASLSALVTSLARSGRPADALRAFRDMLARGVPP DHFTLPPVLRSCALTGSSPLAASAHALALKIGAQGNLFVASALVLCYSGLSNLPDARR LFDGMRERDAVLWTSMLSAYAQGGHPEAALRFFQGMVAARVQLDAVVMVSSLLACGQI GWRRHGRSVHACCIRRLPGMPLSLGNALVDMYVKCGEFAFAERVFAGMPRRDVISWSA LILGHGLNGRSDVALRLFDEMAAEGVRPNSVTFLGALSACAHSGMVDKAYAIFEGMKR HGVKPELKHYSCMADALGRDGRVVAAVKLIEEMPFEPDEAMLGGVLAACRVHGEMEAA ERISKKLMGMSPSKSGYFMSLANIYSDAGRYSDAERIRGFMKEVKVDKLPGYSSVEFD VNVSEPRSG</aaseq>

Gene Sequence

<dnaseqindica>1..1206#atgccgccgcccgcccccgcccccgccacgctcgcctccctcagcgcgctcgtcacctcgctcgcgcgctcgggccgccccgcggacgcgctgcgcgccttccgcgacatgctcgcgcggggtgtgccgcccgaccacttcaccctcccacctgtcctccgctcctgcgcgctcaccggctcgtcgccgctcgccgcctccgcccacgcgctggccctcaagatcggggcccagggtaacctcttcgtggcgtccgcgctggtgctctgctactcgggcctgtccaacctccccgacgcccggaggctgttcgacggaatgcgcgagcgagacgccgtcctgtggacctccatgctgtccgcgtacgctcagggcgggcatcccgaggcggcgctgcggttcttccaggggatggtggcggccagggtgcagcttgacgcggtggtcatggtcagctcacttctcgcctgcggacagattgggtggcgccgccacgggaggagtgttcacgcatgctgcattcggaggctccctgggatgcctctgtcgcttgggaacgcgctcgtggacatgtacgttaagtgcggagaatttgcgttcgccgagagggtgttcgcagggatgcccaggcgggatgttatatcctggagtgcgcttattcttggccatggtctgaatgggcgttctgatgttgcattgaggctttttgatgaaatggctgctgagggagtgagaccgaactctgtcacttttcttggggcactgtcagcttgtgcgcattctggcatggttgacaaagcttatgcaatattcgaggggatgaaacggcatggcgtgaaacctgagctcaaacactactcttgcatggctgatgcgctaggaagggatggccgtgttgttgctgcagttaagctcatagaggaaatgcctttcgagcctgatgaggccatgcttggaggtgtattagcagcctgccgagtgcatggggaaatggaagctgctgaacgaatttcaaagaagttgatgggcatgtcaccttcaaagagtggttacttcatgagcttggcaaacatatattcagatgctgggaggtatagtgatgcagagagaataagaggcttcatgaaggaagtaaaagttgacaagcttcctggatatagttcagttgaatttgatgttaatgtctctgaaccaagatctggatga</dnaseqindica>

External Link(s)

NCBI Gene:Os05g0409800, RefSeq:Os05g0409800