Os05g0415700

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Revision as of 10:21, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os05g0415700| Description = Glycoside hydrolase, family 20 protein| Version = NM_001062092.1 GI:115463914 GeneID:4338802| Length = 5437 bp| Def...")
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Gene Name

Os05g0415700

Description

Glycoside hydrolase, family 20 protein

Version

NM_001062092.1 GI:115463914 GeneID:4338802

Length

5437 bp

Definition

Oryza sativa Japonica Group Os05g0415700, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 5

Location

Chromosome 5:20322046..20327482

Sequence Coding Region

20322530..20322856,20322938..20323012,20323216..20323251,20323358..20323469,20324138..20324208
,20324343..20324473,20324774..20324839,20325059..20325159,20325367..20325426
,20325519..20325552,20325908..20326006,20326075..20326134,20326756..20327006
,20327129..20327301

Expression

GEO Profiles:Os05g0415700

Genome Context

<gbrowseImage1> name=NC_008398:20322046..20327482 source=RiceChromosome05 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008398:20322046..20327482 source=RiceChromosome05 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggcgccagcgatggctctgaggttgctggtggtggtggcggtggcggcggtggtgtcctgcgccgtcgccgccgatgaggggagcgtcgtcgaggtgtggccaatgccggcgacggcgagcaaaggcgggcagacgctgcacgtcagcagggagctcaggatgacggcggaggggagcaagtacgccgacggggaggccatcctgaaggacgcgttccagaggatggtgacgctgatagagctggaccacgtcatcaatggcagctcccagggcttgccgctgctcgccggtgtgaatgtcgtcgtgcatttgcccggcgatgagctcaacttcggggtggatgaatcatacaatttgtcagtgcctgcaactggaagtccaatttatgctcaaattgaggcccaaacagtttttggagcacttcatgccttggagacgtttagccaattgtgtaactttgatttcacctcaaggttaattgaacttcagtctgccccttggagcatcacggacatgcccagatttccttatcgagggcttcttattgatacttcaaggcattaccttcctgtcccagtaataaaaagcgtaatcgattcgatgacctacagcaagttgaatgttcttcattggcatatcgtggatgaacagtcatttcctatagaaataccttcatacccaaaattatggaatggtgcatactcttactcagagagatatacaatggatgatgctatcgacattgttcagtatgctgaacgacgaggtgtcaatgtcttagctgagattgatgttcctggccatgctctctcatggggtgttggttatccgtcgttgtggccatcagctacttgtaaagaaccacttgatgtcagcagcgaatctacattccaagtgattaatggaattctttcagatttcagcaaggtttttaagttcaagtttgtccatttgggaggtgatgaggtcaatacaagttgctggacttccacaccacgcgttaaagcatggttggcccaacatggtatgaaagaatctgatgcctacagatattttgtattgagagctcaaaagatagcaaaatcacatggctacgaagttattaactgggaagaaacctttaacaactttggagacaaactagaccgcagaactgtggtgcataactggcttggaggtggagttgcagagaaagttgttgctgctggtttgagatgcattgtgagcaaccaggataagtggtacctagatcacttggaagttacatgggatggattttatatgaatgaaccactgagaaatatcaagaacccggcacagcagaagttggttcttggtggtgaggtatgcatgtgggctgaacacatagatgcgtctgacattcagcaaaccatttggccacgtgctgcagcagctgcagagcggttgtggactccgtttgagaagctttcaaaggagtgggaaatagcagcgctcagcgcaagactggcacgcttcaggtgcttgctgaatcatagagggatcgctgctggaccggtaactggttatggacgttccgcgccagcagagccaagctcctgtataaagcagtag</cdnaseq>

Protein Sequence

<aaseq>MAPAMALRLLVVVAVAAVVSCAVAADEGSVVEVWPMPATASKGG QTLHVSRELRMTAEGSKYADGEAILKDAFQRMVTLIELDHVINGSSQGLPLLAGVNVV VHLPGDELNFGVDESYNLSVPATGSPIYAQIEAQTVFGALHALETFSQLCNFDFTSRL IELQSAPWSITDMPRFPYRGLLIDTSRHYLPVPVIKSVIDSMTYSKLNVLHWHIVDEQ SFPIEIPSYPKLWNGAYSYSERYTMDDAIDIVQYAERRGVNVLAEIDVPGHALSWGVG YPSLWPSATCKEPLDVSSESTFQVINGILSDFSKVFKFKFVHLGGDEVNTSCWTSTPR VKAWLAQHGMKESDAYRYFVLRAQKIAKSHGYEVINWEETFNNFGDKLDRRTVVHNWL GGGVAEKVVAAGLRCIVSNQDKWYLDHLEVTWDGFYMNEPLRNIKNPAQQKLVLGGEV CMWAEHIDASDIQQTIWPRAAAAAERLWTPFEKLSKEWEIAALSARLARFRCLLNHRG IAAGPVTGYGRSAPAEPSSCIKQ</aaseq>

Gene Sequence

<dnaseqindica>485..811#893..967#1171..1206#1313..1424#2093..2163#2298..2428#2729..2794#3014..3114#3322..3381#3474..3507#3863..3961#4030..4089#4711..4961#5084..5256#ttgtggctgcattagccaccattgttactgatgttctctactgccactgctatccacctgtgcactccatagtttggcacaattcataaaggcagcagcagcagcagcagcaggagcaggatgcactatcatcttcttcttgttgtttttcttgcaaaaggcgggaaggcagaggcaaaagggcgctaaaagttgcggccttttcttgcacccacctagtcgctggcgtgcacattattaagctcttccacttcggcacatccccggatcaatcggcaacggcgtttctcttcatcttcttgctccggcgtggtctggtcgccggcgttactgacggcgacggtttttgaagctgcattcaagtaggtgcgagatcctcgtcgcagttaatataatctcttaaaattctccatgcgtttcttgcagattctgctacatatagtaggtgtgaagccgtacttgccgggtttcttgcagggataggatggcgccagcgatggctctgaggttgctggtggtggtggcggtggcggcggtggtgtcctgcgccgtcgccgccgatgaggggagcgtcgtcgaggtgtggccaatgccggcgacggcgagcaaaggcgggcagacgctgcacgtcagcagggagctcaggatgacggcggaggggagcaagtacgccgacggggaggccatcctgaaggacgcgttccagaggatggtgacgctgatagagctggaccacgtcatcaatggcagctcccagggcttgccgctgctcgccggtgtgaatgtcgtcgtgcatttgcccggcgatgaggtaaagccttgtgaacttgtggtgttctccttttttcttaccttcttgtgacctgtatttggttgattttgtcctctgcagctcaacttcggggtggatgaatcatacaatttgtcagtgcctgcaactggaagtccaatttatgctcaaattgaggttagtgataaaaaaaatatatgctctgctaactgtgctgtcaacatgaaaggttggcagaatatgacatcagatgccgacactttaactgcagacattcttcctttgagaattcacggaaaataatgaaatcgtgttgcttagttctaggaattgtgacacttttttttttttgctgtcacctcactatgtctttattgcaggcccaaacagtttttggagcacttcatgccttggaggtaacttggcatggtttatccactcaatgcatctggatgatcatagataaaaaagacaacacgatcactttcagacaatctaacagtgtaccttctatcgttgcagacgtttagccaattgtgtaactttgatttcacctcaaggttaattgaacttcagtctgccccttggagcatcacggacatgcccagatttccttatcgagggcttcttattggtgagatatattctaaatattggattggttttgtcaacaacagttgtatcaaggcctttagggtattgtaataaatatacttgactgtaacagtagcatccagatagttaatgttgctcacccccataagtaaaattgtaaaagtaacatactcacaatctactgaccatatcataagcctgaaactagaaatgaaagctagcattgatccatgggagaaatagtaccttgtaaccttcctccgttgaactcctttatcttgtatttgctcttgtacatattgccgtgaattgtcctttttttcagaacttctagcagggaccatccctattgttccattaatataaacccttacagctatcagaagttttgaaccaaaatatattccatttcttcataatctcttttccatttgttcacaagtcttttttcttttttggtgttgttaaccaccatcatgaataattctaagatggatgctcatacttactccacatgttccatactaggcttatatgaagaatcagtaaatattgtgcatgtaaaaatagcgtctgatatctctttcttttaaaggatttatctgatacatctactattgtcctcaaatagtttgaggaaagataatacctgatcttttttcaactcaatgcactggcatcctacagatacttcaaggcattaccttcctgtcccagtaataaaaagcgtaatcgattcgatgacctacagcaagttggtaggtttgatcttttcacaagaaaccagttcttcaatcttgattgataattctctccattgcaatggtccttctccagatattcctttagttttagttgcatcatataatctgcttactctatcatcatgcagaatgttcttcattggcatatcgtggatgaacagtcatttcctatagaaataccttcatacccaaaattatggaatggtgcatactcttactcagagagatatacaatggatgatgctatcgacattgttcagtgagtttttctgtctttcatttttcatgtgaaagagcagaatttagcaaatatcactctaaggttatggctggacataagaatttatttaccttcactatgaagtaacaggagctaagagcatgcagtaaaaccacgttaagtaatttatataaatattgcaaagggaactcagcagaaaataaaaaacaaaactctaaaacccattccttctttggagaatgatgtgatcaatttagagatcagttagctatgctgttggatttaaccaaggtaagataacttatcaataatctgcaggtatgctgaacgacgaggtgtcaatgtcttagctgagattgatgttcctggccatgctctctcatggtaagtatttaatatgccaatgctgttcttctctagcatatgctccatgactattcaggttttactgatgaaaacctgaatcctttgtttttgttgtactcatggtataccttttaaatccagaaagcacagtgccttacggatgaagttatttaactagatatgacagtaggaatatcaaaaggttgcaaataaattgcgcatttctttttgttttaggggtgttggttatccgtcgttgtggccatcagctacttgtaaagaaccacttgatgtcagcagcgaatctacattccaagtgattaatggaattctttcaggtaattcacggtttaccaacagaaatcacgttatattttgagtggtacttttattactttgaaagagaaaaaaacagccatttatcttatacttaccaacaaaaggaaaaaaaaaagcagttcaacgaaccgaataatgaatatattgtgaaaaacaaattgatgatcttgtataatattcactaataacttttgatgctctttcagatttcagcaaggtttttaagttcaagtttgtccatttgggaggtgatgaggtcaatacaagtaagtctgcaaaagtatctcccctgcagagcagcagatctcatatcatatagtagtttagtaatctaataattactcactatgaatttcaggttgctggacttccacaccacgcgttaaagcatggtatgctcttatctagaactagtataaagaataagagcaacagcatacttgatatgcacttattgacaatattttctctttattgtagcaaaatacccgagccttggaacagattaaaaaaataagaactaaacatgaaaattatatatgtttctgaggccaaaacattttgcaaccaagcatcaacccataaataaccatgacatatgcattatcatctatttttctacctgcagaagatcccaccaattgtagatgtgttggtgatggccgactcaccaccatcaccaggtccttctgtagcagggatgatcagtcatttgatctaatctgaagtatttttcctggtgtgcaggttggcccaacatggtatgaaagaatctgatgcctacagatattttgtattgagagctcaaaagatagcaaaatcacatggctacgaagttattaactggtatgtgacttggttttgcagatctagatctttcaaatagctattgatacactttcttgtccttgtagggaagaaacctttaacaactttggagacaaactagaccgcagaactgtggtgcataactggtatttcctaactgcctcttgattgtcattatataaaaaattatcagcatccttgttaggaaaagaaaataaaacaaagttgtatgctcttgccaaattatattgtcatgcctattataagaaacaatgaccacatttgccaaatctcaaatatagcacattctcatttgaagaaggcaaagatcaccaagctggaatatgtcattagatatttctaatattggtcctgcgaccatatgttatgcttacattggatggtatttgtcaatttatacatcattgtgatggcactaaatttctctttgaacaaattagtttgcatagtttgtttacacgtcagtaaatgcccattcatagagaacaacttatggtagtatctgtattttgcaatgtccaacaagtaatataaaactagaggaatgttgtttaaacaaggaaatttattgaagtaatgggattgcaaacctttattaagaaaaggtgaaaggattgcaagaaaagtttcaataccattatatagtgcagtttcttctcctaattaggaggacccagccagaaatcatctgtttgtgcagctattggaaattaacagctagtatttttcaccacaaattataacaggcttggaggtggagttgcagagaaagttgttgctgctggtttgagatgcattgtgagcaaccaggataagtggtacctagatcacttggaagttacatgggatggattttatatgaatgaaccactgagaaatatcaagaacccggcacagcagaagttggttcttggtggtgaggtatgcatgtgggctgaacacatagatgcgtctgacattcagcaaaccatttggccacgtgctgcagcagctgcaggtataatcagatacatgacttctcactcttatatactcgattagctagaattcgtaaacttttatcccaaaataacagaaaagtttttcttatctcaccaaaactcacttgttaatttgaagagcggttgtggactccgtttgagaagctttcaaaggagtgggaaatagcagcgctcagcgcaagactggcacgcttcaggtgcttgctgaatcatagagggatcgctgctggaccggtaactggttatggacgttccgcgccagcagagccaagctcctgtataaagcagtaggatatccaaagcagataaatattattattattattattcatattggactgaaaatcatttcagacacccatttaaccgctgtaagcagaagcagtcaaaggaaaaggctggggccaatgtaactgaactctgagttacaagagagtgtttcaataatattgcattctcattttcatgtagt</dnaseqindica>

External Link(s)

NCBI Gene:Os05g0415700, RefSeq:Os05g0415700