Os07g0641600

From RiceWiki
Revision as of 20:40, 22 July 2012 by 124.16.129.48 (talk)
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Function

Please input function information here.

Expression

Please input expression information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this gene

Please input related labs here.

References

Please input cited references here.

Structured Information

Gene Name

Os07g0641600

Description

SAM (and some other nucleotide) binding motif domain containing protein

Version

NM_001066965.1 GI:115473662 GeneID:4344070

Length

4450 bp

Definition

Oryza sativa Japonica Group Os07g0641600, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 7

Location

Chromosome 7:27360950..27365399

Sequence Coding Region

27361697..27361817,27362964..27363072,27363227..27363328,27363431..27363482,27363728..27363801
,27363885..27364004,27365043..27365110,27365228..27365340

Expression

GEO Profiles:Os07g0641600

Genome Context

<gbrowseImage1> name=NC_008400:27360950..27365399 source=RiceChromosome07 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008400:27360950..27365399 source=RiceChromosome07 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggcggactccggcagcgcgagcgagcggcgagaggaagggaagaagggaagggaggaggaggaagaagacgacgtcgtctgtctggacccgtcgttcttcgtcgaccgcagctacgagacgactacgttcaccttcggctcgcaagtgctccacctcctctgcctccgcgctgcttccactgattatgatcttactggacagttagtatggccaggtgcagttctgatgaacacctacttgtctgaacatcctgagactgtgaaggatcattcaataattgagctaggatctggggttggcattactggcatattgtgcagccgtttttgcaaagaagttgtcttgactgatcacaatgatgaagttctagagattataaagaagaatatagagatgcagtcatgttctgggaatgccaatgcagtgttgacagcagagaagctagagtggggaaactatgttcatataagcaatatcattgagaaacatccttctggatttgatctcatccttggagctgatatttgctttcagcaatctagcatttcctgtctctttgatactgtagagaggcttcttcgtattcaggctagtaaatgtagattcatattggcttatgtatcacgagctaaagtcatggatgttctagtgctcaaggaagctgaaaaacatggaatgcatgtcaaagaggtggatgggacaagaacaaccatctcaaatcttgaaggagtcatatatgacattaccctcaaataa</cdnaseq>

Protein Sequence

<aaseq>MADSGSASERREEGKKGREEEEEDDVVCLDPSFFVDRSYETTTF TFGSQVLHLLCLRAASTDYDLTGQLVWPGAVLMNTYLSEHPETVKDHSIIELGSGVGI TGILCSRFCKEVVLTDHNDEVLEIIKKNIEMQSCSGNANAVLTAEKLEWGNYVHISNI IEKHPSGFDLILGADICFQQSSISCLFDTVERLLRIQASKCRFILAYVSRAKVMDVLV LKEAEKHGMHVKEVDGTRTTISNLEGVIYDITLK</aaseq>

Gene Sequence

<dnaseqindica>3583..3703#2328..2436#2072..2173#1918..1969#1599..1672#1396..1515#290..357#60..172#gggtcgccgactcgccgccgccgccgccacgtccacttcagttgcagtcaccggcggcgatggcggactccggcagcgcgagcgagcggcgagaggaagggaagaagggaagggaggaggaggaagaagacgacgtcgtctgtctggacccgtcgttcttcgtcgaccgcaggtgtgcttcgctggttcgctctctgctgatttttgtttggtcgagctgcatcggcttgcttgtgtgctgaagctttgtcccgatttgttgctggggttcgtcgatctgggagggaagctacgagacgactacgttcaccttcggctcgcaagtgctccacctcctctgcctccgcgctgcttccagttagtacctcctgctcctactcgttctttcttgctaagtgtagaggtatagttatctttgatgtggaaatggttccagaaagctgctctattatgcccaattgtgatgcaaaatatggttaatttctacttagctagtctgttctgggtgaaattttcttggctggaagcctgaaaccactgctaagatagcctagtttagaggcaaaaaaaaaaaaagcatagttggttgagcattatactgctcagtatggttgtcattttggtgaagaagtctatgtagaacagcgctgttctattcaaccggcttcatttacagaatcagctgttactggatactaaattagtatctccactcctttttagcttgatgatcatgaattaaggtcatagcatagcatctaccatctatagattactccatcatctctgaatttggtgttacatatgagttcaactggaagatgtgatacgttctgttcatatattcttgttgcttgggcagtagcaaactgggttttcattacaccaatcatgtagttttaggaccacttttaccttgtcccttttgggaacccttccaactcagacattgtcattctagtacgtcagtacaatgaatggtccatgtttcacaggatcaaacaaaatggcggggttttcattttgtgcatatatgtcgtcatgtaactcttatgccccatttcattctgtccttcatgtctgcttctataaccaggaggctatgctgctttgtgtaacatagtaactatcaatctatcatttatctggagatagctcttccgtggaacacaaaagttagatctgagcatgatatactcaagtttatttctatttgtgcagtggacaaatatgaacaatcttatttacaaactagaacctctcatcagtacattaacttgtttgggtgtatttttgctctgggcacaatgctgcattgcacttcataacgccagatttttgctgtttccttatcatggggccaacacttacaaacattctaatgatttgtggcagctgattatgatcttactggacagttagtatggccaggtgcagttctgatgaacacctacttgtctgaacatcctgagactgtgaaggatcattcaataattgagctaggatctggggttggtgagggcattctcctctcatgtttacttcactttgtgatcttggaaaatctgacagtattgtgagcttgtgacttgcttcaggcattactggcatattgtgcagccgtttttgcaaagaagttgtcttgactgatcacaatgatgaagttctagaggcaagcttcaaaccttacgaatatcttccagtgatgtcacttagtttgacaaaatacagaagatattgagactttcacattgtgttcacatattattcggtgcagctgctttatcttcaaattctagaaagtggtgtcatagtcatacattataaaatattcaaggatgattccattgtgccacttgcatatctacttattctatataaatgttgcatctatttattccaaagattgtttgacagattataaagaagaatatagagatgcagtcatgttctgggaatgccaatgcaggttaccacttcttaacttctggttaattatgtttcatcattatgtgaatcactgaaatataaatcttccagatatcaaatagaactgatacttttgttgcagtgttgacagcagagaagctagagtggggaaactatgttcatataagcaatatcattgagaaacatccttctggatttgatctcatccttggagctgatatttatatccttctttcttactttgctgtgatttcttctttcttactttcccgtgatttaatttcagttctgatcctttctctttctattctttctgacatataatcgtatatcgattgttgcatcttgtgaattttgtgaaccttgactcgcagaaagctttcagcaatctagcatttcctgtctctttgatactgtagagaggcttcttcgtattcaggctagtaaatgtagattcatattggcttatgtatcacgagctaaagtgtatgtgttttctcaactcaataactcatcatcttcctgtccgagcatattttaccagagtttctaatattttgtgaaatcgtgtacccgaatgctgttccaagttaggaaagccaatttaatgcgtgtctcatttctgatcaaaatataaatgattgtaccttttattgataaaactatggaataggtacatttttattggtggtatccttattgtgtctaccaagaacaaggactgacttagctattgattctttttaatataccgattaacttgcttgtactataggtctgggtttgctacacatggaataatgaatatcttagtatgaaaggtagctgagtagtcatgatagaactgatcaaagatatatacaagtgaaatcaggagtgcatcaatagcaccaaataatcaaaatgctgcatccaaaatatattgatctgatggattcaaatgtaaagcagattaaacatctgaaatatgatctagcgttaattagtacttagagaggatggtcacaggcaaatctttttcctagtgacatgtagatctacagaagttctgcagattttcatggcaacaaggtgttatgtcacccattctctcgtcagcttgtcgcttgtttgagatactctgcacctgacagttcattgtcctctgcaaaatgattgtccagtactccagttgcattcatgagcaaatagaatatacaggttggcttgcagtagtttgattacaattaactgggctagaacaggtagcagcatactgtggatattttacttggtactgccagaatgtgattactgtactgacatcttgcacatactgccagcataatacttggtatgtccagattgtactgtttaaaaaactgcaatacagaaaggtggtaaaaaataattaagctatttagtgttgtccctttcacttagttgggaccttttggagcttctcgtaacaaattccagtaaaatctggagcaatcccaactctcaataagtcatcccatgttttttttttgggttattttactctccatctaactttaattgattttgtactacttcaagtgttgatagatcatttaaaaataacttgtgtgttcgcttaactaagacactgctgctctcattgattaccagcatggatgttctagtgctcaaggaagctgaaaaacatggaatgcatgtcaaagaggtggatgggacaagaacaaccatctcaaatcttgaaggagtcatatatgacattaccctcaaataatgctgctcttcgcgcatgttgatgaagtgcttaggtgatcagtagtcatgaaaagtacatgcaacttcctctgaatgactacatcctttcggaggaggaaagaataccacactgccacagtaaacagcattattgatgaagggcttcaattcatacgctgtcatgctgatttgatgtaggttttttggagagggattcgatgtggtttttgaatgctttgattatcatggatagtagttttgtcacagctctctctgaatactatcttgtcaaggagatgaccaaaaccctgaagttcttgtgaggaagaagttgctgaaagcagtggcataacgtaagcttgaggttgctggttctgagctctgtaaagttcctgaattaccatgagctagcctgtaaaacgtcaattccaactgaagcttcagcaccattcacttatcctgcaatgcatgggatatatggatccaatcctgggttgttctttagcctgttcttggtttcgccatcttttatgttttgccgcgacaatttgtcaaggcctctgcctaatccaactttgtcatggaggcaaatgccacactcttaccggcttttcttggaggcagcccaagtctggatctccatccagccaaatgacatgaactgtactggatcttgttgtgttcccctgttgcagcacagtgcctgttagcactgatgcattgcacatttgcactgattcattgcactgcttcagctgcaaatctg</dnaseqindica>

External Link(s)

NCBI Gene:Os07g0641600, RefSeq:Os07g0641600