Os05g0434000
| Gene Name |
Os05g0434000 |
|---|---|
| Description |
RNA-directed DNA polymerase (Reverse transcriptase) domain containing protein |
| Version |
NM_001187514.1 GI:297724158 GeneID:9270885 |
| Length |
7473 bp |
| Definition |
Oryza sativa Japonica Group Os05g0434000, complete gene. |
| Source |
Oryza sativa Japonica Group ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
| Chromosome | |
| Location |
Chromosome 5:21277094..21284566 |
| Sequence Coding Region |
21277094..21277537,21277694..21278205,21279829..21281851,21282171..21282242,21282342..21282575 |
| Expression | |
| Genome Context |
<gbrowseImage1> name=NC_008398:21277094..21284566 source=RiceChromosome05 preset=GeneLocation </gbrowseImage1> |
| Gene Structure |
<gbrowseImage2> name=NC_008398:21277094..21284566 source=RiceChromosome05 preset=GeneLocation </gbrowseImage2> |
| Coding Sequence |
<cdnaseq>atggcgccagatgagggcgacggctatcgatctacaccagcatacgtcgggttacagatcgaactggcaaccggcggcgctgcgtgcagacaacggttgctaccgatctacatcaacaaatatcgtcgggctacggatcagatcggcgaccggcggcctcacggtgcggtctccgccccggactccgggattgcaccgtggattagggttctgggaggtgtgatggacaaagggggaaagaagaagggggtggacctggaaggcctcttcctaggtcttaagctgtcccgggaggaattgagaggcatgaaaggatcttggtgcttggaggagaaggatggcggaaaagttcaacaggcagtggggaagttattctctccacgagcaggggtgtacaatctgccgttcggcttgatgaatgtggatactggccgggtaattgggaataaaattgggaaagcattggaggttgatacggatgaggatgggtcagccgtgggaggttatctgctggtgaaggtgctcatggatgcccgcaaagccctaatcggcggggtgatgatggagggtgtcgccggtgagaaggagaattggtgtggagtgaagtacgagttcctgccaaatttttgttattcctgcggcgttctgggtcatgtggaggagtgtgatgataaggtatggaaggaggaagagcagcaattcggggactggttgcgagtcctaccgatgaaacagcgggatgtgcgaggctggagctcggaagggggcagttctgggggttcgtttcagcacaggagtgtcgtatcctggaggaaaagtggagttgagaaaggaggtagcagcggtgtaggtggaaaatctgctagccgggatgaccctgaactaagggatgatgctgaaagcccgggtaaagggcatcccaagatccggatgggcggtgctccgaagaagctgacctttgtcggtgatggtagttcggggagtttgactgaggagagagggcataaaaagctgctggagattacggctccctcggagccgcaactagttccgaccacgggtgaagtagctagtgggttagatggagaggacgctcgggggaaggagcacagtaccatgcaggttcctgtggggggaggagtaaaggacaaacacactctcccgttggctgctgaaagtggtactttggatactgggcactcggggacgggagataagaggaaggccactttcaagcggcgtccgcgagtgatggataaggaagtcggcgccaaggagagcgcgattgctgatactcgaaagtgctctgtaacggaggagatggttgtgaccgaagaacggaagaaacagaatgctcaggtggctgtgagtgatgacgcttccaagttcgtggccttctggatatccagagggaggaggatcccgatgttctgtttatttcggagacgaaaaaaggtggaagggggagctcctcggtccgaaagttgtatggccaagtttcgacaggctttggaggactgccagctgcatgatctgggttttgttggggatgccttcacgtggaggaatcaccatcacctggcgtccaactacataaaggaaagacttgatagagcagtggccaatggtgcctggcgagcacgcttcccgcttgttcgcgtaatcaatggggatccgcgccactcagaccatcgttcggtcattgtggaaaccggtgccactgaaaaacaacaatgggggcaacctttggagattatgcagaagtttgaggctcgttggctggaggaagaagaatgccaggccagagtggaggaagcgtgggagaatgcattggaaggtggtcaaactcggctaatggagatccaaagccgggtcctgaaggaattatgggcttgggaccgcactgtcctgggtgagttgaagaagagggttaaaaatctaaggaaggaattggagaagtgcaggagggagccaatctctaaccggcaagttaacagagaacatttgttgcggtacaagttagagcggctgctggatcaacaacatatttactggaagcagcgagcacattctacctggttaaccaagggcgaccggaacacaaagttcttccatgcccaagcatcggagaagaagaaaagaaatacaatacagaagttgcaggatggccacggtggtttggttgctggaaatcaactaaaaagcttcatttcgaaccagtaccaacaactctttaggtcgaatgggtgctctcagatggatgcagtattacaatgtgtccaagcgcgtgtgaccccggagatgagagaaggccttgctgctccttatcagagagaggaagtttgggtggctttgaaggatatgggggatttaaaagcaccaggcgcagatggtattccagcaatcttctacaaaaaatttttgtcactagctggcgataaggtgaaggatgaggtgctggcggttcttaatggtggggatatgccacagggatggaacgatacagttgtggtattaataccaaagacgaaacagccggacacattgaaagacttgagaccgataagtttatgcaatgtggcatataaactgatctccaaggtgatagtcaatcggttgaaagttgtgctgctggaaataatctctccgtcccaaagtgcgtttgtcccgaggaggttgatcacatacaatgtattactggcatatgagctcacacactacttgaatcaaaggaagaaggggaagaatggagtggctgcgatcaagctggacatgagcaaagcttacgatagggtggaatgggatttcctgcgacacatgatgctgaggttgggcttccatgatcagtgggttaacttagtcatgaagtgtgtaacttctgtgacttaccggatcaagatcaatggggagcactcagatcaaatatacccacagagggggctgaggcagggagatccactttccccttacttgttcattatttgtgcggaaggcctttcagcgctattacagaaagcacaagctgatggaaagatagagggtattaaagtttgcagggacacgccaagaataaaccatctctttttcgccgatgattcccttgtcctgatgcgagctggccagaatgatgcgcaagagttgagaagggttcttaacatatacgaagtggcatcaggccaagtcataaacaaggacaaatcatctgtcctcttcagcccaaacacacttcagagtgataggatggaagttagatcagcgctatgtattaatcaggaggcaaaaaatgaaagatatcttggcctgcctgtctctattgggaagtcaaggaggaaagcttttgagtatattaagaggaaggtgtggctccggatccagggttggcaggagaaattactatcaaaagcagggaaggaaatccttgtcaaagctgtggcccaagctattcctacctatgcgatgtcatgttttgatttgactaaagtcttgaaagctaaatatttcctagatggaagcattctgcagtgtgcgccgcgggacgggatatcatatacttggcgcagtatcttgaaaggagtcgatctcatcaaggaaggtctagtgtggcgagtaggaaccggtgaaaatgttaatatttggaatgatccatggatgcccgttggatttacacgccggccgatcactcccagaggcaactcaatcctaacaaaggttgttgaactgatcgatccaggcacgggatggtgggatgagcaattagtcaatgatctgttttggccggaggatgctgctacgattcttgccacgcatgttgatgagaatttggaggactggccgacatggcattttgattcgaagggacttttctcggtcaaatctgcctataaactggcagtgcaaatcagggagaaggaaaaatgcagagatgcatcaggatcttcactgaatacaagtcatgctgacactcttcagtgggagaaaatctggaacatggagggagtgaaggagtgctggaggagtctgaatcttgaagaagtccgactacgcctagtgcaatatcagtctgggaaggaaaccgtaaaggagatcctgtcaatgactgccaaagatcagttaaaagctgttgttctgctgtggaagtggtggtatgccaggaataaggccaatgtgggagacaagaagctcacgagcctagaggtctgtgatgccgtcctttaccatataatggaccttgaaaagctgcaccagtgtcgaactccatgcatgaaggtgaatggaagatgggaacagcctccggccgatatttacaagatgaacagtgatgcatcttttgatgtgagtacgaaaactggcggctggggtttcctcgcacgaggcagcaatggagaattcctagaggggggttacggctatattttgcgggcatctagtccgttgtag</cdnaseq> |
| Protein Sequence |
<aaseq>MAPDEGDGYRSTPAYVGLQIELATGGAACRQRLLPIYINKYRRA TDQIGDRRPHGAVSAPDSGIAPWIRVLGGVMDKGGKKKGVDLEGLFLGLKLSREELRG MKGSWCLEEKDGGKVQQAVGKLFSPRAGVYNLPFGLMNVDTGRVIGNKIGKALEVDTD EDGSAVGGYLLVKVLMDARKALIGGVMMEGVAGEKENWCGVKYEFLPNFCYSCGVLGH VEECDDKVWKEEEQQFGDWLRVLPMKQRDVRGWSSEGGSSGGSFQHRSVVSWRKSGVE KGGSSGVGGKSASRDDPELRDDAESPGKGHPKIRMGGAPKKLTFVGDGSSGSLTEERG HKKLLEITAPSEPQLVPTTGEVASGLDGEDARGKEHSTMQVPVGGGVKDKHTLPLAAE SGTLDTGHSGTGDKRKATFKRRPRVMDKEVGAKESAIADTRKCSVTEEMVVTEERKKQ NAQVAVSDDASKFVAFWISRGRRIPMFCLFRRRKKVEGGAPRSESCMAKFRQALEDCQ LHDLGFVGDAFTWRNHHHLASNYIKERLDRAVANGAWRARFPLVRVINGDPRHSDHRS VIVETGATEKQQWGQPLEIMQKFEARWLEEEECQARVEEAWENALEGGQTRLMEIQSR VLKELWAWDRTVLGELKKRVKNLRKELEKCRREPISNRQVNREHLLRYKLERLLDQQH IYWKQRAHSTWLTKGDRNTKFFHAQASEKKKRNTIQKLQDGHGGLVAGNQLKSFISNQ YQQLFRSNGCSQMDAVLQCVQARVTPEMREGLAAPYQREEVWVALKDMGDLKAPGADG IPAIFYKKFLSLAGDKVKDEVLAVLNGGDMPQGWNDTVVVLIPKTKQPDTLKDLRPIS LCNVAYKLISKVIVNRLKVVLLEIISPSQSAFVPRRLITYNVLLAYELTHYLNQRKKG KNGVAAIKLDMSKAYDRVEWDFLRHMMLRLGFHDQWVNLVMKCVTSVTYRIKINGEHS DQIYPQRGLRQGDPLSPYLFIICAEGLSALLQKAQADGKIEGIKVCRDTPRINHLFFA DDSLVLMRAGQNDAQELRRVLNIYEVASGQVINKDKSSVLFSPNTLQSDRMEVRSALC INQEAKNERYLGLPVSIGKSRRKAFEYIKRKVWLRIQGWQEKLLSKAGKEILVKAVAQ AIPTYAMSCFDLTKVLKAKYFLDGSILQCAPRDGISYTWRSILKGVDLIKEGLVWRVG TGENVNIWNDPWMPVGFTRRPITPRGNSILTKVVELIDPGTGWWDEQLVNDLFWPEDA ATILATHVDENLEDWPTWHFDSKGLFSVKSAYKLAVQIREKEKCRDASGSSLNTSHAD TLQWEKIWNMEGVKECWRSLNLEEVRLRLVQYQSGKETVKEILSMTAKDQLKAVVLLW KWWYARNKANVGDKKLTSLEVCDAVLYHIMDLEKLHQCRTPCMKVNGRWEQPPADIYK MNSDASFDVSTKTGGWGFLARGSNGEFLEGGYGYILRASSPL</aaseq> |
| Gene Sequence |
<dnaseqindica>7030..7473#6362..6873#2716..4738#2325..2396#1992..2225#1169..1931#698..924#1..162#atggcgccagatgagggcgacggctatcgatctacaccagcatacgtcgggttacagatcgaactggcaaccggcggcgctgcgtgcagacaacggttgctaccgatctacatcaacaaatatcgtcgggctacggatcagatcggcgaccggcggcctcacgtacactcatcacacggcagcagcatatcaagccgaagctagcagttgcacgttaagccatctccattcagcaaacacatgttgtggcaacatggccgaccaaccagaggacgacacgtcatcaccatgctacagtgccatgcacaaggagtagttggccaatgtgttgactaataagtcccttttttttctatttttttcaatggggtgctgagctgtgattaaattcggttattatccgcgccgatcgtctccaataactcctgattcttttctaatctaatcccgatgcaactgctgtaacgttgagctatccaacgggccagtcttcggttgccaggaggccgcacgacctcctggcgactcggagttagttccgaaccctagttctttgctcgggatttcggattggttttcttgctgatcgttctcagatcgttcctctttcaatcgttctgccacattctgcttccttttccctccttccacatactgctttcaatttcacctgttcgcgctcgttcttccggagtagggtgcggtctccgccccggactccgggattgcaccgtggattagggttctgggaggtgtgatggacaaagggggaaagaagaagggggtggacctggaaggcctcttcctaggtcttaagctgtcccgggaggaattgagaggcatgaaaggatcttggtgcttggaggagaaggatggcggaaaagttcaacaggcagtggggaagttattctctccacgagcagggtatgtcgaaggaatggtgtaggcgttgggcaaaatttggtgtccacagagagggattagggctaaggagttgggagataaccttttcctattctctttcttgcaacgcggggggggggggggggaagagaagagccattacggaaggcccgtgggaattcggaggagatctcatcgtagtggattttgatgagacgaagaggctgaaagaccttgtattcacacatttcccagtgtgggtcagggtgtacaatctgccgttcggcttgatgaatgtggatactggccgggtaattgggaataaaattgggaaagcattggaggttgatacggatgaggatgggtcagccgtgggaggttatctgctggtgaaggtgctcatggatgcccgcaaagccctaatcggcggggtgatgatggagggtgtcgccggtgagaaggagaattggtgtggagtgaagtacgagttcctgccaaatttttgttattcctgcggcgttctgggtcatgtggaggagtgtgatgataaggtatggaaggaggaagagcagcaattcggggactggttgcgagtcctaccgatgaaacagcgggatgtgcgaggctggagctcggaagggggcagttctgggggttcgtttcagcacaggagtgtcgtatcctggaggaaaagtggagttgagaaaggaggtagcagcggtgtaggtggaaaatctgctagccgggatgaccctgaactaagggatgatgctgaaagcccgggtaaagggcatcccaagatccggatgggcggtgctccgaagaagctgacctttgtcggtgatggtagttcggggagtttgactgaggagagagggcataaaaagctgctggagattacggctccctcggagccgcaactagttccgaccacgggtgaagtagctagtgggttagatggagaggacgctcgggggaaggagcacagtaccatgcaggttcctgtggggggaggagtaaaggacaaagtgtgcatgaatgtggatatacagggatcaatctcgttggaaagcaacgtcgggtaacagcacactctcccgttggctgctgaaagtggtactttggatactgggcactcggggacgggagataagaggaaggccactttcaagcggcgtccgcgagtgatggataaggaagtcggcgccaaggagagcgcgattgctgatactcgaaagtgctctgtaacggaggagatggttgtgaccgaagaacggaagaaacagaatgctcaggtggctgtgagtgatgacgcttccaaggtcaattatgatctgcaggcaggattggccggccaatcccgccgagataaatgaagataattgcttggaactgtcggggacttgggaatggctcggcagttcgtggccttctggatatccagagggaggaggatcccgatgttctgtttatttcggagacgaaaaaaggtggtaagtggatggagggtttaagatggtggttggatatgcctaacatgttggcgaaggacagtgagggagctaggggtggtctagctttgttttggaagaagggggtgcaggttgatgtgcagagttttctcgttaccatattgatgccaccatcaaggatgtgcgtgggtttgagtggaggttcacaggaatgtatggggaaccgaggagcgaggagaaagaaaaaacctggcgcctattaaggattctgtgtgatcggagtacccttccctggctatgttgtggggactttaatgaaattttgttcaattgtgagaaggaagggggagctcctcggtccgaaagttgtatggccaagtttcgacaggctttggaggactgccagctgcatgatctgggttttgttggggatgccttcacgtggaggaatcaccatcacctggcgtccaactacataaaggaaagacttgatagagcagtggccaatggtgcctggcgagcacgcttcccgcttgttcgcgtaatcaatggggatccgcgccactcagaccatcgttcggtcattgtggaaaccggtgccactgaaaaacaacaatgggggcaacctttggagattatgcagaagtttgaggctcgttggctggaggaagaagaatgccaggccagagtggaggaagcgtgggagaatgcattggaaggtggtcaaactcggctaatggagatccaaagccgggtcctgaaggaattatgggcttgggaccgcactgtcctgggtgagttgaagaagagggttaaaaatctaaggaaggaattggagaagtgcaggagggagccaatctctaaccggcaagttaacagagaacatttgttgcggtacaagttagagcggctgctggatcaacaacatatttactggaagcagcgagcacattctacctggttaaccaagggcgaccggaacacaaagttcttccatgcccaagcatcggagaagaagaaaagaaatacaatacagaagttgcaggatggccacggtggtttggttgctggaaatcaactaaaaagcttcatttcgaaccagtaccaacaactctttaggtcgaatgggtgctctcagatggatgcagtattacaatgtgtccaagcgcgtgtgaccccggagatgagagaaggccttgctgctccttatcagagagaggaagtttgggtggctttgaaggatatgggggatttaaaagcaccaggcgcagatggtattccagcaatcttctacaaaaaatttttgtcactagctggcgataaggtgaaggatgaggtgctggcggttcttaatggtggggatatgccacagggatggaacgatacagttgtggtattaataccaaagacgaaacagccggacacattgaaagacttgagaccgataagtttatgcaatgtggcatataaactgatctccaaggtgatagtcaatcggttgaaagttgtgctgctggaaataatctctccgtcccaaagtgcgtttgtcccgaggaggttgatcacatacaatgtattactggcatatgagctcacacactacttgaatcaaaggaagaaggggaagaatggagtggctgcgatcaagctggacatgagcaaagcttacgatagggtggaatgggatttcctgcgacacatgatgctgaggttgggcttccatgatcagtgggttaacttagtcatgaagtgtgtaacttctgtgacttaccggatcaagatcaatggggagcactcagatcaaatatacccacagagggggctgaggcagggagatccactttccccttacttgttcattatttgtgcggaaggcctttcagcgctattacagaaagcacaagctgatggaaagatagagggtattaaagtttgcagggacacgccaagaataaaccatctctttttcgccgatgattcccttgtcctgatgcgagctggccagaatgatgcgcaagagttgagaagggttcttaacatatacgaagtggcatcaggccaagtcataaacaaggacaaatcatctgtcctcttcagcccaaacacacttcagagtgataggatggaagttagatcagcgctatgtattaatcaggaggcaaaaaatgaaagatatcttggcctgcctgtctctattgggaagtcaaggaggaaagcttttgagtatattaagaggaaggtgtggctccggatccagggttggcaggagaaattactatcaaaagcagggaaggaaatccttgtcaaagctgtggcccaagctattcctacctatgcgatgtcatgttttgatttgactaaaggtttatgtgatgaaatcaattccatgattagcaagtggtggtggagccagaatgacaaggaaaataaaatacactggctgtcgtgggagaagatgacgctccctaaaaagcttggcgggccaggattccgggatcttcatctgttcaacatggcgatgcttgctcggcaggcatggcggctcctcctaaatgtagactcgctctgtgggcaagtctttgttgacgaaaaaatcgaacacaccggcctgggagatctgcttagctcctgtgcaagtccaaagattgatgagatgcgggcgtgccagtcagtttgatcctgcaactgacaagatatgcaaatagtagatcaaaacagccaatcggctgacaagccgatggagtagttccagccgatagccgataatagccgatgccgatatcagccgatagcgatagggtttaagcaatcggctatatgtccaatgtagataatgatatagaggcaatcggctaatgatgatgtaataaaataacaataaaacccagtataaaccaatcggcaaataatgatatgatagataagcatcgatccgaaggttaaagcacacatcggctggaggtccgatgtcatgaaatccacaagattagattaaacagtgaaacatttgttgtcatcggctaaatccaacttatatgtatatgcaatccttatgagccgatgcaacacccgataactcaccggctgaaatctcgatgaaacccttattggcaatcaagaagcaggctagagattatggttctaagcatgacttagtagatcaaacttaactaatgcagcactaagtatgaaaagaaacataatatctagacaatcaagccgttgactgagttttcagggtggtagatgtctaagctaatctaatctagcaagacgatttagccgataccggcagaaaccctaaaacgagaagcaactgatagagctaaattgatatgctaagactagattaacagagacatgataaataggtaggcaagtatatcatccaaaccagagcaatccaagaggtcgaatgtactgatgcagccttgaacgacgctgacgtagacaatacaatagcctgggcctgcagaacattggacttatcccttcgccggagatcgaagacgatgcagccccgcgtcgggtgccaagttccgccggaacgtaaaaacaaaagtagaaataaaagggtggcgatgcgccgaattgtattgatcgtgaggatagattacatagaccccgggtgtacatatttatacccatgggttgatacaagtccttctcggacaagaaagaaactaacctaaagataaaaggaaaatataaagtccttatcggacactaaacacactttcctaaagataaaaggaaactaacaaactattcctaattaatagataaactgccatgccgcatcctctttaaactcggtcacttagggataagcttcctttagtagattgatttccttaaccgaatatagtaggaatctgactattggcgactttataactcccatcggctgattccgagatgctgcagccgataatgattctaagccgatgatgtttttgccgattaccaaatttcactgttaacagtcttgaaagctaaatatttcctagatggaagcattctgcagtgtgcgccgcgggacgggatatcatatacttggcgcagtatcttgaaaggagtcgatctcatcaaggaaggtctagtgtggcgagtaggaaccggtgaaaatgttaatatttggaatgatccatggatgcccgttggatttacacgccggccgatcactcccagaggcaactcaatcctaacaaaggttgttgaactgatcgatccaggcacgggatggtgggatgagcaattagtcaatgatctgttttggccggaggatgctgctacgattcttgccacgcatgttgatgagaatttggaggactggccgacatggcattttgattcgaagggacttttctcggtcaaatctgcctataaactggcagtgcaaatcagggagaaggaaaaatgcagagatgcatcaggatcttcactgaatacaagtcatgctgacactcttcagtgggagaaaatctggaacatggaggtgccaaataagattaaaatgtttgtttgaagactagctcacaaaagcctgccagttcgatgcaatattcggcgaaggggcatggagtcggacaatttatgtccgatgtgtaatagatttgatgaggactgtgggcatttgtttctgaaatgtaagggagtgaaggagtgctggaggagtctgaatcttgaagaagtccgactacgcctagtgcaatatcagtctgggaaggaaaccgtaaaggagatcctgtcaatgactgccaaagatcagttaaaagctgttgttctgctgtggaagtggtggtatgccaggaataaggccaatgtgggagacaagaagctcacgagcctagaggtctgtgatgccgtcctttaccatataatggaccttgaaaagctgcaccagtgtcgaactccatgcatgaaggtgaatggaagatgggaacagcctccggccgatatttacaagatgaacagtgatgcatcttttgatgtgagtacgaaaactggcggctggggtttcctcgcacgaggcagcaatggagaattcctagaggggggttacggctatattttgcgggcatctagtccgttgtag</dnaseqindica> |
| External Link(s) |
