Os05g0439000

From RiceWiki
Revision as of 10:23, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os05g0439000| Description = Similar to RING-H2 finger protein ATL1O (RING-H2 finger protein ATL11)| Version = NM_001062197.1 GI:115464124 GeneID:...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Gene Name

Os05g0439000

Description

Similar to RING-H2 finger protein ATL1O (RING-H2 finger protein ATL11)

Version

NM_001062197.1 GI:115464124 GeneID:4338915

Length

1189 bp

Definition

Oryza sativa Japonica Group Os05g0439000, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 5

Location

Chromosome 5:21516236..21517424

Sequence Coding Region

21516673..21517335

Expression

GEO Profiles:Os05g0439000

Genome Context

<gbrowseImage1> name=NC_008398:21516236..21517424 source=RiceChromosome05 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008398:21516236..21517424 source=RiceChromosome05 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggacgcgccgcggctgcaccattccgccagggcgctcctcctcgtggcgccgagcgcgtctcccgcgccggcggcggtgccaccaggagtcgccggcgctctgccggtcgccgagaatggccgcggcggtcccctcgccgtgtcgtcgctcaacaccaacaccatcgtcctgctcgcgctcctcgtctgcggcctcgtcgccgccgtcgcgctccacgtcgtactccagtgcgcgctccgcgtcacgcggcgcgcgtgctacggcgcggagaccgccgccgccgccgctgcaggaggaggaggagaaggaggccgcgcgaggcggggtggcggaggcgggggcaggaagcggacgccgccgctgtcgaagacgatcccgcgcgtggcgtacacggaggggctcgagctggccgggtcgtcgcggtcggagtgcgtgatatgcctcgccgagttcgcgcgcggggagcacgtgcgcgtgctgccgggctgcaaccacggcttccacgaccgctgcattgaccggtggctcgcggcgcggccgacgtgccccacgtgcaggcaggcgccgttcgccgccgccgccgccgatcccgtcgcgccgccggaccctgcaccggcggccgtgcaggtggtgcgagtcatagtactcactagtcaatag</cdnaseq>

Protein Sequence

<aaseq>MDAPRLHHSARALLLVAPSASPAPAAVPPGVAGALPVAENGRGG PLAVSSLNTNTIVLLALLVCGLVAAVALHVVLQCALRVTRRACYGAETAAAAAAGGGG EGGRARRGGGGGGRKRTPPLSKTIPRVAYTEGLELAGSSRSECVICLAEFARGEHVRV LPGCNHGFHDRCIDRWLAARPTCPTCRQAPFAAAAADPVAPPDPAPAAVQVVRVIVLT SQ</aaseq>

Gene Sequence

<dnaseqindica>90..752#acaaagtagctagttcactcttagctagctccgacgtgatcgatcgcgcgagctagctaactaagctgcttcgtcgtcgtcgctcgctcatggacgcgccgcggctgcaccattccgccagggcgctcctcctcgtggcgccgagcgcgtctcccgcgccggcggcggtgccaccaggagtcgccggcgctctgccggtcgccgagaatggccgcggcggtcccctcgccgtgtcgtcgctcaacaccaacaccatcgtcctgctcgcgctcctcgtctgcggcctcgtcgccgccgtcgcgctccacgtcgtactccagtgcgcgctccgcgtcacgcggcgcgcgtgctacggcgcggagaccgccgccgccgccgctgcaggaggaggaggagaaggaggccgcgcgaggcggggtggcggaggcgggggcaggaagcggacgccgccgctgtcgaagacgatcccgcgcgtggcgtacacggaggggctcgagctggccgggtcgtcgcggtcggagtgcgtgatatgcctcgccgagttcgcgcgcggggagcacgtgcgcgtgctgccgggctgcaaccacggcttccacgaccgctgcattgaccggtggctcgcggcgcggccgacgtgccccacgtgcaggcaggcgccgttcgccgccgccgccgccgatcccgtcgcgccgccggaccctgcaccggcggccgtgcaggtggtgcgagtcatagtactcactagtcaatagctggtacccatggtggcatactggcatgagctgcttagacgtggtcgatcgcctcgtgtgcagcggccgcgccactgtgtccacagctagtatacagtgtgtgttgccgacttggcgagttggcgtgtgtcgccgaatcggcaaacgtttcgaagccgttacacttggtaaagtgggcgatggatgtgtaggggtgtacaagtgttcgggcctatgcatattgcacgcaggagcaggacacgatggtacgaagccgaatcgaggcgaaacgggagtaatctgccctgccgggttccctgcggactgtcagcctttgacgctgtgagtctgtgacaagcactttttttttttagcaaaacagaccatgtcctgtgagatggtgacaaagcacaagtgttacacatttttccctttgtatatgtgcatgtaaattttgc</dnaseqindica>

External Link(s)

NCBI Gene:Os05g0439000, RefSeq:Os05g0439000