Os08g0500300

From RiceWiki
Revision as of 20:52, 22 July 2012 by 124.16.129.48 (talk)
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Function

Please input function information here.

Expression

Please input expression information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this gene

Please input related labs here.

References

Please input cited references here.

Structured Information

Gene Name

Os08g0500300

Description

Protein phosphatase 2C-like domain containing protein

Version

NM_001068690.1 GI:115477117 GeneID:4345947

Length

4471 bp

Definition

Oryza sativa Japonica Group Os08g0500300, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 8

Location

Chromosome 8:24788147..24792617

Sequence Coding Region

24788570..24789124,24789339..24789562,24789766..24789883,24790008..24790379,24792245..24792571

Expression

GEO Profiles:Os08g0500300

Genome Context

<gbrowseImage1> name=NC_008401:24788147..24792617 source=RiceChromosome08 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008401:24788147..24792617 source=RiceChromosome08 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgggctcctgcctctcctccgacctgcctccccgcgccggcgccggcgcgggagcgtcacccgggtggccgcagcggtggcggaggaggaggcagcggggggtggagcggggcggggctgtttccggcggcggcggcggcgtcttctccatcggcgtcggcggcaagaagctgcaccacggcggcggaggaggaggggagatgacggaggaggagctcgcgaaggtcgaggggagggtgtgcgtcaacggcgcgagcgcggcggcgtgcctgcacacgcagcaggggcggaagggcaccaaccaggacgccatggtcgtgtgggagaactttaatacaagtgatagtgtcttctgtggtgtgtttgatggtcatggtccatatggtcattttgttgccaagaaggtcagagattctcttcctgtcaaaatacgcacactatggaaaaccagtgccaacgaggacactagttcccaccaaaatggaagcatttctggaagtgttaattcagaagagtcacctgttgttgatgatgaatggggtgaatatgctgatgacagcgagaagcttcctgagatgtttcttccacttaagcagtcttattttaaggctttcaaattgatggacaaggaactcaaaatgcaccctacagttgattgcttttgcagtggatcaacagcagtcacgttagtaaaacagggattggatcttgtggttgggaaccttggggactcgagagcaataatggggacacgagatgctgccaataatctaactgctgtacaactcacagttgatttgaagcctaaccttccaagggaagctgcgaggatccagcagtgtaggggaagagtttttgctcttcaggatgaaccagaagttgccagagtatggttgccaaataatgactctcctggattggcaatggcaagagcttttggagacttctgccttaaagattatggtttaatatctgttccacagatatcctatcgtcgtcttactgaaaaggatgagttcataatactggccactgatggggtttgggacgtcctctcaaacaaggaggctgttgacatagtagccgcagctccatctcgtgcaacggctgccagggctcttgtcgactgtgctgtcagatcatggagattgaagttcccaacatccaagagcgatgactgcgctgttgtgtgcctattcttagaccatgcaaagtcacctgacttgattcaagagaacgagagcgaggaagaaactacagaggatgttgcaatcccagacaccgttgctaaggttgaccaagacattgcacaaggagatgcacatatctccagtgaagagcaaatcaccgagccagcattgcagcactcctacacattaagggatgttgatgagattgtaccggtagaggagcctccagtctcaaaggaacctgaaagatgtggatctgcccgcagccttgctgattgtatatccacaaacgaggaggaggaatggtcagcactcgaaggtgtgacgcgggtcaattccctcttgaaccttcccagaatactttcaggcgagaagagatcaaccagctggaggaagcggcgatga</cdnaseq>

Protein Sequence

<aaseq>MGSCLSSDLPPRAGAGAGASPGWPQRWRRRRQRGVERGGAVSGG GGGVFSIGVGGKKLHHGGGGGGEMTEEELAKVEGRVCVNGASAAACLHTQQGRKGTNQ DAMVVWENFNTSDSVFCGVFDGHGPYGHFVAKKVRDSLPVKIRTLWKTSANEDTSSHQ NGSISGSVNSEESPVVDDEWGEYADDSEKLPEMFLPLKQSYFKAFKLMDKELKMHPTV DCFCSGSTAVTLVKQGLDLVVGNLGDSRAIMGTRDAANNLTAVQLTVDLKPNLPREAA RIQQCRGRVFALQDEPEVARVWLPNNDSPGLAMARAFGDFCLKDYGLISVPQISYRRL TEKDEFIILATDGVWDVLSNKEAVDIVAAAPSRATAARALVDCAVRSWRLKFPTSKSD DCAVVCLFLDHAKSPDLIQENESEEETTEDVAIPDTVAKVDQDIAQGDAHISSEEQIT EPALQHSYTLRDVDEIVPVEEPPVSKEPERCGSARSLADCISTNEEEEWSALEGVTRV NSLLNLPRILSGEKRSTSWRKRR</aaseq>

Gene Sequence

<dnaseqindica>3494..4048#3056..3279#2735..2852#2239..2610#47..373#gaagcggttgcccaactctgtgctccgccgtgttgccgccgccgccatgggctcctgcctctcctccgacctgcctccccgcgccggcgccggcgcgggagcgtcacccgggtggccgcagcggtggcggaggaggaggcagcggggggtggagcggggcggggctgtttccggcggcggcggcggcgtcttctccatcggcgtcggcggcaagaagctgcaccacggcggcggaggaggaggggagatgacggaggaggagctcgcgaaggtcgaggggagggtgtgcgtcaacggcgcgagcgcggcggcgtgcctgcacacgcagcaggggcggaagggcaccaaccaggacgccatggtcgtgtgggaggtgagccaggcagccatggtggatggcttctgagtcctcctgatcattggtactagtagcgttttccttcgcgtgttggttctgaaaatctcgcccgcctttttcctcgccgtgttgctcggttcagaacttggtgcttgcgtttactcgatctttccgaagtcttctttgaactttttttttcttcacggtattggctttggatcaatagcggatttgaattcggagtgtgtgtatattcgattcacagggaggagcgttttagtggagtgcttgattcgaaatgtgggatttgactttataacagaataagcaaaacctcttctatttttctagtttgttcttcgaaacagttcgagcatttcttgatttggtctcactgggagcgtcttcttgctttgttggatgacttaattcgaaatgggaaggattcagctttagattgttttgagatttaatctgaaaacgaggagtttactggttctttttgtatgtgaaaattgtggggggggaaagctcactttttctgtattattgtaatgtttcctgaatcctgataattttaaaagaaaatctgataaatgggacgtgttagttggaatattggagacttggagtcgtctgctcgtgcttgcgttgattcaaaactttctgtatagtccaagcgagatcctttcctgtgacccttggcaaaagcttctacctttctttgtattcttctgttagtttaaagaagagtatgattttggctgtttcttcaactagatgctcttgacaggtcaagcgattagtctggtctagtaatagctggcttggtatatttagcttatatcctaatcaactaatcgactcccttcattttcatgatatgtaagcaagtagttatgttgactccatcacacaattggtggagtttacctaaagggagtggtgaagtacaatcatggataattttcacttttgttttggacctacaactaggcagctagctaaacttatctagctacataggaatatcttgtgagcttgttttaggaagtcaaacaagtaaaagcagccactttatgatatgcatggtgatcatgctcttcagaggacagtaaagagaatttatgcctaaagattctcagtataatgctattgattgctaatattcaacgaaaataggtaagtacttctttattggagtgaggaggtacttccttgacaaatagtttccatctgttggaattgagtttttattttcttccttttggcttgggatttatattttttatattttttcttgttttgcctcgccttctgttttgaaatgtgagttataacagaaatcatatttctagtcaactttcaacatgaatatgaaatacccttatagggactgttcgatgtcttgctaatagaacctcttagcataggagtatcctcatttactaagggtcagttgcaacaattgctaatcgcatggaacaatgccttgtgagggttccatcatgggtgattggatgctaatttgataccttttccttgcctagttgctgactttatccatctcatttgtgctatttgaggtctgattatctgattctatcctatgtgcatttctcacattgttcacccaactacctgtgtctaccgttctttgtgtagggaatactccattgtgaaaatatgagcatactgaatagaatcccacaaatacagtttgttagaacccatctatacccttcagtttattttcctgaaaagtaatgtgcattgtcgatttgcttttaaacaaattaattatagacattaccagcttatcacatcactggtactaggagcgcaaacaattatctgacctagcccttccattcttgcagaactttaatacaagtgatagtgtcttctgtggtgtgtttgatggtcatggtccatatggtcattttgttgccaagaaggtcagagattctcttcctgtcaaaatacgcacactatggaaaaccagtgccaacgaggacactagttcccaccaaaatggaagcatttctggaagtgttaattcagaagagtcacctgttgttgatgatgaatggggtgaatatgctgatgacagcgagaagcttcctgagatgtttcttccacttaagcagtcttattttaaggctttcaaattgatggacaaggaactcaaaatgcaccctacagttgattgcttttgcagtggatcaacagcagtcacgttagtaaaacaggtgagggatgcttctaaacttgttctagtattcgtagataactgaccagcatttggaacaaaaaaaatagtggtagatattgaaatcaaaatgacagaagaactggacatggcttattttccagggattggatcttgtggttgggaaccttggggactcgagagcaataatggggacacgagatgctgccaataatctaactgctgtacaactcacagttgatttgaagcctaaccttccaagtatgttcatttctcacttatcatttcagtgggtacccttgtgttttcaaaactgaactttctctttaactgcgcatttaggattttcttcttttcctcctagatatggcttcagtcaaacttattaacgcactaagtatagttacttgtctggattggtcactctttttggttaatcgctaatcttcatatttcttatttaggggaagctgcgaggatccagcagtgtaggggaagagtttttgctcttcaggatgaaccagaagttgccagagtatggttgccaaataatgactctcctggattggcaatggcaagagcttttggagacttctgccttaaagattatggtttaatatctgttccacagatatcctatcgtcgtcttactgaaaaggatgagttcataatactggccactgatggggtatttttcttatcatcttattactttcttactactacttaatatggtgttgaaagttactaattccttttgtgaatagaaatgcatcatgttctccaatccctacttaatccatggggattggggaatagtttgatttaacatacaaagatgttacagccttcactccttcagctgcttcaacttgtaatattggtaaactcaatgcatgtaggtttgggacgtcctctcaaacaaggaggctgttgacatagtagccgcagctccatctcgtgcaacggctgccagggctcttgtcgactgtgctgtcagatcatggagattgaagttcccaacatccaagagcgatgactgcgctgttgtgtgcctattcttagaccatgcaaagtcacctgacttgattcaagagaacgagagcgaggaagaaactacagaggatgttgcaatcccagacaccgttgctaaggttgaccaagacattgcacaaggagatgcacatatctccagtgaagagcaaatcaccgagccagcattgcagcactcctacacattaagggatgttgatgagattgtaccggtagaggagcctccagtctcaaaggaacctgaaagatgtggatctgcccgcagccttgctgattgtatatccacaaacgaggaggaggaatggtcagcactcgaaggtgtgacgcgggtcaattccctcttgaaccttcccagaatactttcaggcgagaagagatcaaccagctggaggaagcggcgatgaacgattcccccgcttaagtcaggctgagagcgcatttcagtcgaaaccggcaatttcagccaggagtgtgcaaatctcttcggtccctgggattttattagagccgatttttaggtttcttcacccagattgtttcataccctgtacactccagatcgatctgttcttccttttgttctcttgtcaggaggtgtttcatgcttgggcttctttacttgtttttttgtgtataagaaagtttttgttctgtgagaagccttctgtaaaatcatgtaatacctcctcccttctcctctcttggtggatggatgttcagttcacctgctgtttctatgctggaacaagaactcaattctatatgtattagctcatgaattttcagctgcaagtataaaagcttcctaattttgcaccttgtctgcc</dnaseqindica>

External Link(s)

NCBI Gene:Os08g0500300, RefSeq:Os08g0500300