Os08g0502000

From RiceWiki
Revision as of 20:52, 22 July 2012 by 124.16.129.48 (talk)
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Function

Please input function information here.

Expression

Please input expression information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this gene

Please input related labs here.

References

Please input cited references here.

Structured Information

Gene Name

Os08g0502000

Description

Conserved hypothetical protein

Version

NM_001068702.1 GI:115477141 GeneID:4345959

Length

6462 bp

Definition

Oryza sativa Japonica Group Os08g0502000, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 8

Location

Chromosome 8:24888582..24895043

Sequence Coding Region

24888955..24890043,24890135..24890198,24890275..24890393,24890479..24890550,24890749..24890859
,24891612..24891653,24893053..24893145,24893437..24893538,24893607..24893748
,24894548..24894798

Expression

GEO Profiles:Os08g0502000

Genome Context

<gbrowseImage1> name=NC_008401:24888582..24895043 source=RiceChromosome08 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008401:24888582..24895043 source=RiceChromosome08 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgaacaagaaggtggttaagatacggcttcttgaggattgtccacctgccccattgtccagtgacaaaaaatcatttggtacagtgaaccgtttttcctcaagtgatgtgataaccaaaaagaggaaagtgcttgtgtctggaggtacaaaacattgtgctcttagtgctgtggctagggaaaaaacatcagttccgtcatttatccccttgagctcattccctgttattgataaaagcactgagaggaggattcatgagttcgcacagaaagtgtcatctgatataaccattgaggatatacaaaaaaagctagtggttccatctacacacacaccggtttcgaagaatactgataagattacattgggaatggtgcaaagatctgttgaggctataaatgctgctctgcatatgttagaaaatggtgcatccatagaagatgtcaaatctgtatgtgcacctagtgatcttttccaacttgcaaggtggaagaataaactgaatatatatcttgcaccatttcttcatggcatgcgctacacatcttatgggcgccacttcaccaaactggacaaactcgagcagattgtagataggctacaatggtatattgaaagtggtgatacggttgttgacttttgctgtggctcaaatgattttagcttattattgaaggaaaagcttgaagcttctgaaaaaagttgcttctataaaaattttgatcttattcaaccaaagaatgacttcaattttgagagacgagactggatgaccgttcaaccagatgaattgcccacaggatgtcgattgatcatgggattgaatcctccgtttgggtttaaagcttctcttgctaatcaattcattaataaagccctcactttcaagcccaagctgatcatactcattgttcctaaggaaactgaaaggctggacaggaaatacccaccatatgagctaatatgggaggattctcatcagcttgcaggaaagtcgttctatttgcctgggtcgcttgatgctgataacaagattatggaacaatggaatatgtcaccacctcctctttctctatggagccgtagtgattgggctcggaaacacaaggaaatagctaaaacaatggggcacatcagtaaaaatgtgtggtgcttagatgatactcaaaggtctgttgtaaacacagggcatgcacaaatggctaatgagggggatgatgaccttgacaacaaagaaagacaagaagaggcaccactaaatgcctctgttatagatcagttgttgtctgacacataccatgatcctactagctcgccaggggactactggacagataccaatggaagatcacggcagccttgcaactacgagggaagaaatgatccaacccatgaatatcatgcaggcatgggttgtggatctgacatgagcatttcatcatctgacaagagcgattgtgaaaaacaaaccgaaactatgtcaaactcagagcatgggcatactggttcagaagcccacgatcatgttggaagtgcacctgtggaacaaccaactggttttgcggattgtgatgaggtgacatcagctggcattgagtaccatagcctggaaaattcaccactcacagagagacctgcagatgcagctggagttcaatacaagatgctggaagacacaccacctcctctggatgaactcgtacctggcttttctgggcagccgatcgtttcacttcctggaggaggcaggctttcagctgggttgcaatatcaaaggctggaagacacactgtccagagggacacctgaagctggtgctggttgcagacagctggaagattcactacctgcaccccctgctgcttctgaggtcgatgcagtggttgcaaaatatctgccacagacaacgagtgatctccctgcattaccgttcgttcctgctccaagaattcccttccctggactccagttcgccccaagaaatgacttgtggcaaggatggtacccacctccagaatttctgtccagaggcatggaccatccgcctttcatgcacggctcctctggttggctcgacgactag</cdnaseq>

Protein Sequence

<aaseq>MNKKVVKIRLLEDCPPAPLSSDKKSFGTVNRFSSSDVITKKRKV LVSGGTKHCALSAVAREKTSVPSFIPLSSFPVIDKSTERRIHEFAQKVSSDITIEDIQ KKLVVPSTHTPVSKNTDKITLGMVQRSVEAINAALHMLENGASIEDVKSVCAPSDLFQ LARWKNKLNIYLAPFLHGMRYTSYGRHFTKLDKLEQIVDRLQWYIESGDTVVDFCCGS NDFSLLLKEKLEASEKSCFYKNFDLIQPKNDFNFERRDWMTVQPDELPTGCRLIMGLN PPFGFKASLANQFINKALTFKPKLIILIVPKETERLDRKYPPYELIWEDSHQLAGKSF YLPGSLDADNKIMEQWNMSPPPLSLWSRSDWARKHKEIAKTMGHISKNVWCLDDTQRS VVNTGHAQMANEGDDDLDNKERQEEAPLNASVIDQLLSDTYHDPTSSPGDYWTDTNGR SRQPCNYEGRNDPTHEYHAGMGCGSDMSISSSDKSDCEKQTETMSNSEHGHTGSEAHD HVGSAPVEQPTGFADCDEVTSAGIEYHSLENSPLTERPADAAGVQYKMLEDTPPPLDE LVPGFSGQPIVSLPGGGRLSAGLQYQRLEDTLSRGTPEAGAGCRQLEDSLPAPPAASE VDAVVAKYLPQTTSDLPALPFVPAPRIPFPGLQFAPRNDLWQGWYPPPEFLSRGMDHP PFMHGSSGWLDD</aaseq>

Gene Sequence

<dnaseqindica>5001..6089#4846..4909#4651..4769#4494..4565#4185..4295#3391..3432#1899..1991#1506..1607#1296..1437#246..496#ttccaaagggcgtgggagggccttcttcccaataaccgaatattaatattttgcctgtatgatttctcagtttttttttataaaattgttgcgtttgttattcaagtacacaaatttctgactaaatcttgtaatttttgcataggaaacatgatattgatcctaaacttagaaccccgacaagagatcatattaaatttcctgataatcctgctgtcacgagaaagcccttcgatgtaaatggaatgaacaagaaggtggttaagatacggcttcttgaggattgtccacctgccccattgtccagtgacaaaaaatcatttggtacagtgaaccgtttttcctcaagtgatgtgataaccaaaaagaggaaagtgcttgtgtctggaggtacaaaacattgtgctcttagtgctgtggctagggaaaaaacatcagttccgtcatttatccccttgagctcattccctgttattgataaaagcactgagaggaggtaaatcttgcgcacttctactgttaattgttttcctctttcattcagttctcattgtttccttttgttatgcaatcaactttgactgcaaaagtgaaaaccaaatgtttgttccgcataaaaacaactctagtaaagctgttgaaactaaaaattatacagttataatttgggagtggctatggtacatgtgtagttagttttatgcaatcttgtaaacttatcacataatccactgatcatcctacgagtgggaatggtaggaagcagaagcaatatttaaggagggaaaactaatctttggtggaaaattttaccatgtaccatagctactccttttatgttttactgttcaactatgtttgaaaaaaaaataaactgcaattttttggattggtgtaccagcagtgagtgagtgccaagtttattttgcttaactgctttggggtttatttacactctgttgtaaaggtactgactactgaatcacattgagaaaagttgaagaggtaaacagaatacagaaatttattacaaatcatatggggacacctggaatttctgacaagattagcatccattgtggatgattaaatggttgtattcaaatttgttggatttctggctgctaacaaagaattcagaaatgatttgttccatggtttattcaacagacaaaatttcattgtacatgcagtttgcatgataccctttaaaatgtctgttgaagctgaacttaggtgatgttgtgtttttatttactgcaatccgcaagagctgagattatcctttaattcaggattcatgagttcgcacagaaagtgtcatctgatataaccattgaggatatacaaaaaaagctagtggttccatctacacacacaccggtttcgaagaatactgataagattacattgggaatggtgcaaagatctgttgaggtactcttctgcgcttccttaaaagaaatgccatgaatttggtcgattcttacatattgtccttgcaggctataaatgctgctctgcatatgttagaaaatggtgcatccatagaagatgtcaaatctgtatgtgcacctagtgatcttttccaacttgcaaggtggaaggtacatgaatatattgaaaacacacttccttgctgtaacaatggtttactgctgaatattatgaactcctgtgtctcattcttatatgtaataggccttatagtttgtttctctttatgcacaatgagaatggtcaacatcacaccagataatagaaaaattcctatgattctaacatgcttgtaattgcttatgattgtgtggagtgatatatgctaaaagcaagtttgtagtctgtatagaaataacaaaacctcttctatccatgatatcatgaactattgtctgcagaataaactgaatatatatcttgcaccatttcttcatggcatgcgctacacatcttatgggcgccacttcaccaaactggacaaactcgagcaggttggtatgcagatcagtaatactgtgggttggttattttgctgtactgatctatcatccttttaattttcctttggaagataacattttgatttcggaagttataaatattatttttaaatgttaacccaaaacagtcttgtcatgaaataaatattcttgcgaacgggtctgtagccagtggccacaacactctagtagcacctaccagcgtctagttcaactccccttgggagcaagttttcagggttggttttaaaaaggacactcgctggcccctcggttaaaacacgtgttagaaaacaacctgtgggcaagccctcgtgtacgggacaggggcctcaaagcacagattaaggcccgaaccatggggggcaggtcctcgtgtcaagggaccagggttcatggactttcttggctggctttggctgctgaggcttcttcgtgaaaaagccgtgggggtggtctttcccccaccgatcaagtttcttttaaatggatattcttgccaattctttgctcattatcgtcagttttaacaaagttgtacttgattttgtaattggaaaaagaaatctatatctcgtccttcaactcttgttcagtttactcttcattactcaactataaattgtttggttctgcatgaattaaattgtttcgtgatgaatacttggaaaaacaatgttccaattatcaaatagccctgcaaatattacttgtgaatccaaagttccagacaattactgtgtcaatgaggtttatgtttggacctctgcacattcatatgcagtggtacacatcacttgtcaaatattttaattaccactccctttgtctcaagatggagagatgatcatcatttcatagaaggaactgtttggcctccctctgtttagagaagaagttgccatgattaaaattaagcaagaacaaattatgctacccctctaccattccttggcatgtaccattttgctgtatttttatgtgctgagagttaaacgtggacaaaggaatcaaacacattttttttaaaatcttattcaagtgtcaatcttgtcttgtgatttgcttgcataaatatgtccactgcaccaataaacaaaagtaggaatttgtttcatttggtattaccaatggaaatttctagagatctatatccttttgctactttttaccacttgtgaattcaattgtgatgaatgaaaaccaaacttcatatttcaattttcataaccactgttgtttgatttcatgccctgtttttattagcactgaaaaatagtggttattcttacctcggggttattgttatgcttaactattatatactctagtttctaccttcttctgatgctgtttttagtactgacataacaatgtttaaattatgcagattgtagataggctacaatggtatattgaaagtggtgatacggtacatgtttgttctgctttgttatgtaaatttggtcatcatgaatgtgcataagtgatgcaacatacaggtttcaatgtgcttgctttttgtgtcatacatctgcataaattctggtgttcgattgtagcgatattgtatcgatgctttatccttgccaagcttagatatccaggttcaaatgaagtaaattagctcgggcagttgtttatttgtactgggagtctgggaagagcctgctggctctcaaaaactaacacggagatatattttcatttattcgtgctaatcttgctctatggattttgatattatgccgagtcatgacaatggataacctcaatgtcctaatttcgatactatgcaaacaattaccctagctgcttagcatagatactaaatgattgcaataatgtaatagtaggatttatgtgtcaccgtctgctcgatctgtcaagtgtttaatgccacttgctttatacccttggattaacctctcaaatcttcatactgtgtttcaagagaagtagatgatggcagattttctattttattgatgtcttgatttgactctttgtaatcgtgcttgcaatgctgttgatctaccaacttaatgctatgtttagttttccatctgatattgattgtaccaatttttttgggttcataataaaaatagaagacctttacacatgatccagatgtgccacttctaacaattcactacacattccttttcctgtctgttttaggttgttgacttttgctgtggctcaaatgattttagcttattattgaaggaaaagcttgaagcttctgaaaaaagttgcttctataaaaattttgatcttattcaaccaaaggtgggggtaatatatgatgttttttttaatattgaacaagttaccatgcatgaaatagatacgttcagtaagatggaaataccggggagattaaaagggtaaaagctacatatatgagggcctagtcatgcacctgataaatatttttgtcacaccctatcctgtgttgaagctgacacaacatacctctttccctagaatgacttcaattttgagagacgagactggatgaccgttcaaccagatgaattgcccacaggatgtcgattggtatactcacaacccagccattcattttatttgttctcacagaaagtctcagttttctctacttgatatttgctatttccctcagatcatgggattgaatcctccgtttgggtttaaagcttctcttgctaatcaattcattaataaagccctcactttcaagcccaagctgatcatactcattgttcctaaggaaactgaaaggtactgtcccactctccatatatacttgtggctgtcattgattgttaacacagctccattttttaatgtctggtaggctggacaggaaatacccaccatatgagctaatatgggaggattctcatcagcttgcaggaaaggtacgatagtactctccttggtacagttgcatgttatccttgacatggtgttgcaaaattccgttctgactgtttctttggaaaactgtagtcgttctatttgcctgggtcgcttgatgctgataacaagattatggaacaatggaatatgtcaccacctcctctttctctatggagccgtagtgattgggctcggaaacacaaggaaatagctaaaacaatggggcacatcagtaaaaatgtgtggtgcttagatgatactcaaaggtctgttgtaaacacagggcatgcacaaatggctaatgagggggatgatgaccttgacaacaaagaaagacaagaagaggcaccactaaatgcctctgttatagatcagttgttgtctgacacataccatgatcctactagctcgccaggggactactggacagataccaatggaagatcacggcagccttgcaactacgagggaagaaatgatccaacccatgaatatcatgcaggcatgggttgtggatctgacatgagcatttcatcatctgacaagagcgattgtgaaaaacaaaccgaaactatgtcaaactcagagcatgggcatactggttcagaagcccacgatcatgttggaagtgcacctgtggaacaaccaactggttttgcggattgtgatgaggtgacatcagctggcattgagtaccatagcctggaaaattcaccactcacagagagacctgcagatgcagctggagttcaatacaagatgctggaagacacaccacctcctctggatgaactcgtacctggcttttctgggcagccgatcgtttcacttcctggaggaggcaggctttcagctgggttgcaatatcaaaggctggaagacacactgtccagagggacacctgaagctggtgctggttgcagacagctggaagattcactacctgcaccccctgctgcttctgaggtcgatgcagtggttgcaaaatatctgccacagacaacgagtgatctccctgcattaccgttcgttcctgctccaagaattcccttccctggactccagttcgccccaagaaatgacttgtggcaaggatggtacccacctccagaatttctgtccagaggcatggaccatccgcctttcatgcacggctcctctggttggctcgacgactagaggagtgagacattaacccaagccctagtaaagattactgacagccgctgttagcaaagaccacttgtgcagttgtgcttcaacctggcgaggaaggtgaaaaggtgaaaacaccagacttggttcttctcttgtcacgagccaccgtgtagagtctgtagagtacagctacttgtgctgtgcctcggcctatcttttcaaggtgcgagcttgttttgtcctacggcctgcttttagaatacgctgaggctacatgctactaccaattttctggacaggaaacttccaaaactctccttgccaatccacgcctgttgatgtactaggacgtattttgcctctttccttgttggttggttggttggttgcactc</dnaseqindica>

External Link(s)

NCBI Gene:Os08g0502000, RefSeq:Os08g0502000